Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGCCATCGCCGCCCCTGCCTCTCTTCTCTCCATCGAGATCTCCGACGACAATCTCCCTCCATCCGTTGAAGCCACCATCGTCACCTTAGTTCTCTGTCAAGCTTCTGTTCATCGTTAGCCCAAACCGCCACACCACGAGCCGCTCCCCTTTCCGTCAACCATCTCCTCTGCGTCGTGATGTCCAAATCTGAAGTGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCACGAAGCTCCAACTGTCGTTATCGCATCTCCACGAACCCAGTTGCCACCGTCACAATCTCCCATTCGCATGGAGCTTGTTGCACCATCCATTCTTCTCTGTAGCACGTTGCCGCACCAGGACATGCTCTCCTCGCCATTGAAGAAGCCCCTGTTCTCGAGCATTCATGTCCCAAGTGTGAGTGCATAG
mRNA sequence
ATGGCCGCCGCCATCGCCGCCCCTGCCTCTCTTCTCTCCATCGAGATCTCCGACGACAATCTCCCTCCATCCGTTGAAGCCACCATCGTCACCTTAGTTCTCTGTCAAGCTTCTGTTCATCGTTAGCCCAAACCGCCACACCACGAGCCGCTCCCCTTTCCGTCAACCATCTCCTCTGCGTCGTGATGTCCAAATCTGAAGTGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCACGAAGCTCCAACTGTCGTTATCGCATCTCCACGAACCCAGTTGCCACCGTCACAATCTCCCATTCGCATGGAGCTTGTTGCACCATCCATTCTTCTCTGTAGCACGTTGCCGCACCAGGACATGCTCTCCTCGCCATTGAAGAAGCCCCTGTTCTCGAGCATTCATGTCCCAAGTGTGAGTGCATAG
Coding sequence (CDS)
ATGTCCAAATCTGAAGTGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCACGAAGCTCCAACTGTCGTTATCGCATCTCCACGAACCCAGTTGCCACCGTCACAATCTCCCATTCGCATGGAGCTTGTTGCACCATCCATTCTTCTCTGTAGCACGTTGCCGCACCAGGACATGCTCTCCTCGCCATTGAAGAAGCCCCTGTTCTCGAGCATTCATGTCCCAAGTGTGAGTGCATAG
Protein sequence
MSKSEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSPLKKPLFSSIHVPSVSA
Homology
BLAST of MELO3C031633.jh1.t1 vs. NCBI nr
Match:
TYK03645.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 110 bits (275), Expect = 2.01e-28
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 0
Query: 5 EVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSPL 64
+ SGLCLLQP+FV+E PTVV+ SPRTQ PS+SPIRMEL+APSILL STLPHQ +LSSPL
Sbjct: 107 KASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRMELIAPSILLRSTLPHQGVLSSPL 166
Query: 65 KKPLFSSIHVPSVSA 79
KKP SS HVPSV A
Sbjct: 167 KKPPSSSSHVPSVDA 181
BLAST of MELO3C031633.jh1.t1 vs. NCBI nr
Match:
KAA0050041.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 107 bits (266), Expect = 4.59e-27
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0
Query: 1 MSKSEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDML 60
M + + SGLCLLQP+FV+E+PTVV+ PRTQ S+SPIRMEL+APSILL STLPHQ +L
Sbjct: 103 MFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPIRMELIAPSILLRSTLPHQGVL 162
Query: 61 SSPLKKPLFSSIHVPSVSA 79
SSPLKKP SS HVPSV A
Sbjct: 163 SSPLKKPPSSSSHVPSVDA 181
BLAST of MELO3C031633.jh1.t1 vs. NCBI nr
Match:
KAA0062299.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 111 bits (277), Expect = 3.09e-26
Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 0
Query: 2 SKSEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLS 61
S+SEVSGLCLLQPVF+HEA VV+ SPRT+ PPS+SPI MELVAPSILL STL HQ MLS
Sbjct: 968 SESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMELVAPSILLRSTLLHQGMLS 1027
Query: 62 SPLKKPLFSSIHVPSVSA 79
PLKKP SS HVPSV A
Sbjct: 1028 LPLKKPPSSSSHVPSVGA 1045
BLAST of MELO3C031633.jh1.t1 vs. NCBI nr
Match:
KAA0059932.1 (GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1 GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 103 bits (257), Expect = 1.72e-24
Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 0
Query: 4 SEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSP 63
S+ SGLCLLQP+FVHEA T V+ASPRTQLPPS+SPIRME+VAPSILLCSTL HQD+LSS
Sbjct: 247 SKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILLCSTLSHQDVLSS- 306
Query: 64 LKKPLFSSIHVPSVSA 79
S +VPSV A
Sbjct: 307 -------SSYVPSVGA 314
BLAST of MELO3C031633.jh1.t1 vs. NCBI nr
Match:
KAA0047344.1 (zinc finger protein ZAT11 [Cucumis melo var. makuwa])
HSP 1 Score: 72.0 bits (175), Expect = 5.71e-13
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 0
Query: 5 EVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSPL 64
+ SGL LLQ +V+AS RTQ P S+SPI +ELVAPSI+L STLPHQ +L+SPL
Sbjct: 162 KASGLRLLQ---------LVVASLRTQSPLSRSPICVELVAPSIILRSTLPHQGVLTSPL 221
Query: 65 KKPLFSSIHVPS 76
KKP SS HVPS
Sbjct: 222 KKPSSSSNHVPS 224
BLAST of MELO3C031633.jh1.t1 vs. ExPASy TrEMBL
Match:
A0A5D3BX22 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00750 PE=4 SV=1)
HSP 1 Score: 110 bits (275), Expect = 9.71e-29
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 0
Query: 5 EVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSPL 64
+ SGLCLLQP+FV+E PTVV+ SPRTQ PS+SPIRMEL+APSILL STLPHQ +LSSPL
Sbjct: 107 KASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRMELIAPSILLRSTLPHQGVLSSPL 166
Query: 65 KKPLFSSIHVPSVSA 79
KKP SS HVPSV A
Sbjct: 167 KKPPSSSSHVPSVDA 181
BLAST of MELO3C031633.jh1.t1 vs. ExPASy TrEMBL
Match:
A0A5A7U8W2 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00170 PE=4 SV=1)
HSP 1 Score: 107 bits (266), Expect = 2.22e-27
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0
Query: 1 MSKSEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDML 60
M + + SGLCLLQP+FV+E+PTVV+ PRTQ S+SPIRMEL+APSILL STLPHQ +L
Sbjct: 103 MFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPIRMELIAPSILLRSTLPHQGVL 162
Query: 61 SSPLKKPLFSSIHVPSVSA 79
SSPLKKP SS HVPSV A
Sbjct: 163 SSPLKKPPSSSSHVPSVDA 181
BLAST of MELO3C031633.jh1.t1 vs. ExPASy TrEMBL
Match:
A0A5A7V9C3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE=4 SV=1)
HSP 1 Score: 111 bits (277), Expect = 1.49e-26
Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 0
Query: 2 SKSEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLS 61
S+SEVSGLCLLQPVF+HEA VV+ SPRT+ PPS+SPI MELVAPSILL STL HQ MLS
Sbjct: 968 SESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMELVAPSILLRSTLLHQGMLS 1027
Query: 62 SPLKKPLFSSIHVPSVSA 79
PLKKP SS HVPSV A
Sbjct: 1028 LPLKKPPSSSSHVPSVGA 1045
BLAST of MELO3C031633.jh1.t1 vs. ExPASy TrEMBL
Match:
A0A5D3DMR1 (GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001490 PE=3 SV=1)
HSP 1 Score: 103 bits (257), Expect = 8.32e-25
Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 0
Query: 4 SEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSP 63
S+ SGLCLLQP+FVHEA T V+ASPRTQLPPS+SPIRME+VAPSILLCSTL HQD+LSS
Sbjct: 247 SKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILLCSTLSHQDVLSS- 306
Query: 64 LKKPLFSSIHVPSVSA 79
S +VPSV A
Sbjct: 307 -------SSYVPSVGA 314
BLAST of MELO3C031633.jh1.t1 vs. ExPASy TrEMBL
Match:
A0A5A7TWK4 (Zinc finger protein ZAT11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001660 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 2.77e-13
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 0
Query: 5 EVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSPL 64
+ SGL LLQ +V+AS RTQ P S+SPI +ELVAPSI+L STLPHQ +L+SPL
Sbjct: 162 KASGLRLLQ---------LVVASLRTQSPLSRSPICVELVAPSIILRSTLPHQGVLTSPL 221
Query: 65 KKPLFSSIHVPS 76
KKP SS HVPS
Sbjct: 222 KKPSSSSNHVPS 224
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK03645.1 | 2.01e-28 | 76.00 | charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa] | [more] |
KAA0050041.1 | 4.59e-27 | 70.89 | charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa] | [more] |
KAA0062299.1 | 3.09e-26 | 76.92 | pol protein [Cucumis melo var. makuwa] | [more] |
KAA0059932.1 | 1.72e-24 | 72.37 | GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1... | [more] |
KAA0047344.1 | 5.71e-13 | 61.11 | zinc finger protein ZAT11 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BX22 | 9.71e-29 | 76.00 | Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... | [more] |
A0A5A7U8W2 | 2.22e-27 | 70.89 | Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... | [more] |
A0A5A7V9C3 | 1.49e-26 | 76.92 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE... | [more] |
A0A5D3DMR1 | 8.32e-25 | 72.37 | GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... | [more] |
A0A5A7TWK4 | 2.77e-13 | 61.11 | Zinc finger protein ZAT11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
MELO3C031633.jh1.t1.exon | MELO3C031633.jh1.t1.exon | exon |
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
MELO3C031633.jh1.t1.start_codon | MELO3C031633.jh1.t1.start_codon | start_codon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
MELO3C031633.jh1.t1.cds | MELO3C031633.jh1.t1.cds | CDS |
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
MELO3C031633.jh1.t1.stop_codon | MELO3C031633.jh1.t1.stop_codon | stop_codon |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
MELO3C031633.jh1.t1 | MELO3C031633.jh1.t1-protein | polypeptide |