MELO3C031633.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C031633.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCharged multivesicular body protein 7 isoform X1
Locationchr06: 6719617 .. 6720041 (+)
RNA-Seq ExpressionMELO3C031633.jh1
SyntenyMELO3C031633.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGCCATCGCCGCCCCTGCCTCTCTTCTCTCCATCGAGATCTCCGACGACAATCTCCCTCCATCCGTTGAAGCCACCATCGTCACCTTAGTTCTCTGTCAAGCTTCTGTTCATCGTTAGCCCAAACCGCCACACCACGAGCCGCTCCCCTTTCCGTCAACCATCTCCTCTGCGTCGTGATGTCCAAATCTGAAGTGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCACGAAGCTCCAACTGTCGTTATCGCATCTCCACGAACCCAGTTGCCACCGTCACAATCTCCCATTCGCATGGAGCTTGTTGCACCATCCATTCTTCTCTGTAGCACGTTGCCGCACCAGGACATGCTCTCCTCGCCATTGAAGAAGCCCCTGTTCTCGAGCATTCATGTCCCAAGTGTGAGTGCATAG

mRNA sequence

ATGGCCGCCGCCATCGCCGCCCCTGCCTCTCTTCTCTCCATCGAGATCTCCGACGACAATCTCCCTCCATCCGTTGAAGCCACCATCGTCACCTTAGTTCTCTGTCAAGCTTCTGTTCATCGTTAGCCCAAACCGCCACACCACGAGCCGCTCCCCTTTCCGTCAACCATCTCCTCTGCGTCGTGATGTCCAAATCTGAAGTGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCACGAAGCTCCAACTGTCGTTATCGCATCTCCACGAACCCAGTTGCCACCGTCACAATCTCCCATTCGCATGGAGCTTGTTGCACCATCCATTCTTCTCTGTAGCACGTTGCCGCACCAGGACATGCTCTCCTCGCCATTGAAGAAGCCCCTGTTCTCGAGCATTCATGTCCCAAGTGTGAGTGCATAG

Coding sequence (CDS)

ATGTCCAAATCTGAAGTGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCACGAAGCTCCAACTGTCGTTATCGCATCTCCACGAACCCAGTTGCCACCGTCACAATCTCCCATTCGCATGGAGCTTGTTGCACCATCCATTCTTCTCTGTAGCACGTTGCCGCACCAGGACATGCTCTCCTCGCCATTGAAGAAGCCCCTGTTCTCGAGCATTCATGTCCCAAGTGTGAGTGCATAG

Protein sequence

MSKSEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSPLKKPLFSSIHVPSVSA
Homology
BLAST of MELO3C031633.jh1 vs. NCBI nr
Match: TYK03645.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 2.01e-28
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 0

Query: 5   EVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSPL 64
           + SGLCLLQP+FV+E PTVV+ SPRTQ  PS+SPIRMEL+APSILL STLPHQ +LSSPL
Sbjct: 107 KASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRMELIAPSILLRSTLPHQGVLSSPL 166

Query: 65  KKPLFSSIHVPSVSA 79
           KKP  SS HVPSV A
Sbjct: 167 KKPPSSSSHVPSVDA 181

BLAST of MELO3C031633.jh1 vs. NCBI nr
Match: KAA0050041.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 4.59e-27
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0

Query: 1   MSKSEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDML 60
           M + + SGLCLLQP+FV+E+PTVV+  PRTQ   S+SPIRMEL+APSILL STLPHQ +L
Sbjct: 103 MFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPIRMELIAPSILLRSTLPHQGVL 162

Query: 61  SSPLKKPLFSSIHVPSVSA 79
           SSPLKKP  SS HVPSV A
Sbjct: 163 SSPLKKPPSSSSHVPSVDA 181

BLAST of MELO3C031633.jh1 vs. NCBI nr
Match: KAA0062299.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (277), Expect = 3.09e-26
Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 0

Query: 2    SKSEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLS 61
            S+SEVSGLCLLQPVF+HEA  VV+ SPRT+ PPS+SPI MELVAPSILL STL HQ MLS
Sbjct: 968  SESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMELVAPSILLRSTLLHQGMLS 1027

Query: 62   SPLKKPLFSSIHVPSVSA 79
             PLKKP  SS HVPSV A
Sbjct: 1028 LPLKKPPSSSSHVPSVGA 1045

BLAST of MELO3C031633.jh1 vs. NCBI nr
Match: KAA0059932.1 (GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1 GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 1.72e-24
Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 0

Query: 4   SEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSP 63
           S+ SGLCLLQP+FVHEA T V+ASPRTQLPPS+SPIRME+VAPSILLCSTL HQD+LSS 
Sbjct: 247 SKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILLCSTLSHQDVLSS- 306

Query: 64  LKKPLFSSIHVPSVSA 79
                  S +VPSV A
Sbjct: 307 -------SSYVPSVGA 314

BLAST of MELO3C031633.jh1 vs. NCBI nr
Match: KAA0047344.1 (zinc finger protein ZAT11 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 5.71e-13
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 5   EVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSPL 64
           + SGL LLQ         +V+AS RTQ P S+SPI +ELVAPSI+L STLPHQ +L+SPL
Sbjct: 162 KASGLRLLQ---------LVVASLRTQSPLSRSPICVELVAPSIILRSTLPHQGVLTSPL 221

Query: 65  KKPLFSSIHVPS 76
           KKP  SS HVPS
Sbjct: 222 KKPSSSSNHVPS 224

BLAST of MELO3C031633.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BX22 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00750 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 9.71e-29
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 0

Query: 5   EVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSPL 64
           + SGLCLLQP+FV+E PTVV+ SPRTQ  PS+SPIRMEL+APSILL STLPHQ +LSSPL
Sbjct: 107 KASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRMELIAPSILLRSTLPHQGVLSSPL 166

Query: 65  KKPLFSSIHVPSVSA 79
           KKP  SS HVPSV A
Sbjct: 167 KKPPSSSSHVPSVDA 181

BLAST of MELO3C031633.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U8W2 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00170 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 2.22e-27
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0

Query: 1   MSKSEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDML 60
           M + + SGLCLLQP+FV+E+PTVV+  PRTQ   S+SPIRMEL+APSILL STLPHQ +L
Sbjct: 103 MFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPIRMELIAPSILLRSTLPHQGVL 162

Query: 61  SSPLKKPLFSSIHVPSVSA 79
           SSPLKKP  SS HVPSV A
Sbjct: 163 SSPLKKPPSSSSHVPSVDA 181

BLAST of MELO3C031633.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V9C3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 1.49e-26
Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 0

Query: 2    SKSEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLS 61
            S+SEVSGLCLLQPVF+HEA  VV+ SPRT+ PPS+SPI MELVAPSILL STL HQ MLS
Sbjct: 968  SESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMELVAPSILLRSTLLHQGMLS 1027

Query: 62   SPLKKPLFSSIHVPSVSA 79
             PLKKP  SS HVPSV A
Sbjct: 1028 LPLKKPPSSSSHVPSVGA 1045

BLAST of MELO3C031633.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DMR1 (GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001490 PE=3 SV=1)

HSP 1 Score: 103 bits (257), Expect = 8.32e-25
Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 0

Query: 4   SEVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSP 63
           S+ SGLCLLQP+FVHEA T V+ASPRTQLPPS+SPIRME+VAPSILLCSTL HQD+LSS 
Sbjct: 247 SKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILLCSTLSHQDVLSS- 306

Query: 64  LKKPLFSSIHVPSVSA 79
                  S +VPSV A
Sbjct: 307 -------SSYVPSVGA 314

BLAST of MELO3C031633.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TWK4 (Zinc finger protein ZAT11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001660 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.77e-13
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 5   EVSGLCLLQPVFVHEAPTVVIASPRTQLPPSQSPIRMELVAPSILLCSTLPHQDMLSSPL 64
           + SGL LLQ         +V+AS RTQ P S+SPI +ELVAPSI+L STLPHQ +L+SPL
Sbjct: 162 KASGLRLLQ---------LVVASLRTQSPLSRSPICVELVAPSIILRSTLPHQGVLTSPL 221

Query: 65  KKPLFSSIHVPS 76
           KKP  SS HVPS
Sbjct: 222 KKPSSSSNHVPS 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK03645.12.01e-2876.00charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0050041.14.59e-2770.89charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0062299.13.09e-2676.92pol protein [Cucumis melo var. makuwa][more]
KAA0059932.11.72e-2472.37GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1... [more]
KAA0047344.15.71e-1361.11zinc finger protein ZAT11 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BX229.71e-2976.00Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7U8W22.22e-2770.89Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7V9C31.49e-2676.92Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE... [more]
A0A5D3DMR18.32e-2572.37GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7TWK42.77e-1361.11Zinc finger protein ZAT11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031633.jh1.t1MELO3C031633.jh1.t1mRNA