Sequences
The following sequences are available for this feature:
Legend: exon start_codon CDS polypeptide stop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATG CTAGTAGTTTTAGACAAAGTACTCGTCGGGAATGAAAACCCAGAAGGAGAAGCCGCAAACGGTGAAGACGAAGTCAAATTTTGGGAAGAACTCGAAGAAAGGGAGCTCTGGAATGGAGAGCTGGATAAAGATGACGCAAACAAGTTCGAAGTGGAAACCGATGACGAAGTGCCTGAAGAAGATGCACCAAAGGGACTAGACCCAAACAAACCTGAACCTGTACTTCCTGAAGATGGAGCCGATGTCCCAAACAGAGAGGCACCAGAACCTGAAGCGGGAGCAGAGGCACCAAACAACGCCGATCCCGAACTTGCAGCGGATGCAGCTGTGCCGAACAATGGTGCACTGGAAGTAGTTGCAGAAGACGCCCCTCCAAACAAGGACGGAGCCGATGATGCCCCTGCAGATGGAGCAGCCCCAAACAAGGGCGCAGATGAGGTCCCAGCAGAGGAGGAAAGAGCCCCAAAGGAAGGCGCAACTGAGCTCCCAGAGGATGGAGCAGCCCCAAACGACGGCGCAGGTGAGCTCCCAGCCCCAAACAAGGAGGCAGATGAGGTCCCGGAGGAGGAAGCAGCCCCAAACAAGGGAGCGGAGGAGTTTGCTGATGAAGATGAAGCCCCGAATCCGAAAGAATTGAATCCCGTTGAGGATGAAGAAACCCCAAATAAGGACGAAGCTGAAGGTGCTGAGGAAGAAGGAACGCTAGAGGAAGATGCTCCGGTGGAAGCGGAGGCGAGGGAGAAAGAGAAGGGAGAGGAAGTAGAGGAGGAGAAAGAGGAAGAGCCAAAGCCAAAGGAAGAAGAAGAAGAAGGCGGATTGGAGGTTGGATTGGGAAACGGGGAGGACGAGGAAGTAGGGTTTGAGGAGGAGGAGGAAGATGATAGAGATAAAGGGGAAGCGGATGATCCGAAGGAAAAGGTGGTGGATCCGAAGGAGAAACCAGTGGTTGAGGAAAATGGAGAAGAAGAAGAAGATTGA
ATGCTAGTAGTTTTAGACAAAGTACTCGTCGGGAATGAAAACCCAGAAGGAGAAGCCGCAAACGGTGAAGACGAAGTCAAATTTTGGGAAGAACTCGAAGAAAGGGAGCTCTGGAATGGAGAGCTGGATAAAGATGACGCAAACAAGTTCGAAGTGGAAACCGATGACGAAGTGCCTGAAGAAGATGCACCAAAGGGACTAGACCCAAACAAACCTGAACCTGTACTTCCTGAAGATGGAGCCGATGTCCCAAACAGAGAGGCACCAGAACCTGAAGCGGGAGCAGAGGCACCAAACAACGCCGATCCCGAACTTGCAGCGGATGCAGCTGTGCCGAACAATGGTGCACTGGAAGTAGTTGCAGAAGACGCCCCTCCAAACAAGGACGGAGCCGATGATGCCCCTGCAGATGGAGCAGCCCCAAACAAGGGCGCAGATGAGGTCCCAGCAGAGGAGGAAAGAGCCCCAAAGGAAGGCGCAACTGAGCTCCCAGAGGATGGAGCAGCCCCAAACGACGGCGCAGGTGAGCTCCCAGCCCCAAACAAGGAGGCAGATGAGGTCCCGGAGGAGGAAGCAGCCCCAAACAAGGGAGCGGAGGAGTTTGCTGATGAAGATGAAGCCCCGAATCCGAAAGAATTGAATCCCGTTGAGGATGAAGAAACCCCAAATAAGGACGAAGCTGAAGGTGCTGAGGAAGAAGGAACGCTAGAGGAAGATGCTCCGGTGGAAGCGGAGGCGAGGGAGAAAGAGAAGGGAGAGGAAGTAGAGGAGGAGAAAGAGGAAGAGCCAAAGCCAAAGGAAGAAGAAGAAGAAGGCGGATTGGAGGTTGGATTGGGAAACGGGGAGGACGAGGAAGTAGGGTTTGAGGAGGAGGAGGAAGATGATAGAGATAAAGGGGAAGCGGATGATCCGAAGGAAAAGGTGGTGGATCCGAAGGAGAAACCAGTGGTTGAGGAAAATGGAGAAGAAGAAGAAGATTGAGAGGTGGAAGATCCAAAGCCGAAACCCGACATCTCGATCGATCTCCGGTGGAAAAGACTGAAATGAAGGGTTTTAGAAGGTTTTAGAGGTCATCAGTATGAACATATGAAATGTCCCATTTGCCCTTTTGCTAAGAAATAGATCGATCGGGCAACGACGGCGAACGGAGGAAATCGGGATTGGACAGCATCGTGGACGGCGGTG
ATGCTAGTAGTTTTAGACAAAGTACTCGTCGGGAATGAAAACCCAGAAGGAGAAGCCGCAAACGGTGAAGACGAAGTCAAATTTTGGGAAGAACTCGAAGAAAGGGAGCTCTGGAATGGAGAGCTGGATAAAGATGACGCAAACAAGTTCGAAGTGGAAACCGATGACGAAGTGCCTGAAGAAGATGCACCAAAGGGACTAGACCCAAACAAACCTGAACCTGTACTTCCTGAAGATGGAGCCGATGTCCCAAACAGAGAGGCACCAGAACCTGAAGCGGGAGCAGAGGCACCAAACAACGCCGATCCCGAACTTGCAGCGGATGCAGCTGTGCCGAACAATGGTGCACTGGAAGTAGTTGCAGAAGACGCCCCTCCAAACAAGGACGGAGCCGATGATGCCCCTGCAGATGGAGCAGCCCCAAACAAGGGCGCAGATGAGGTCCCAGCAGAGGAGGAAAGAGCCCCAAAGGAAGGCGCAACTGAGCTCCCAGAGGATGGAGCAGCCCCAAACGACGGCGCAGGTGAGCTCCCAGCCCCAAACAAGGAGGCAGATGAGGTCCCGGAGGAGGAAGCAGCCCCAAACAAGGGAGCGGAGGAGTTTGCTGATGAAGATGAAGCCCCGAATCCGAAAGAATTGAATCCCGTTGAGGATGAAGAAACCCCAAATAAGGACGAAGCTGAAGGTGCTGAGGAAGAAGGAACGCTAGAGGAAGATGCTCCGGTGGAAGCGGAGGCGAGGGAGAAAGAGAAGGGAGAGGAAGTAGAGGAGGAGAAAGAGGAAGAGCCAAAGCCAAAGGAAGAAGAAGAAGAAGGCGGATTGGAGGTTGGATTGGGAAACGGGGAGGACGAGGAAGTAGGGTTTGAGGAGGAGGAGGAAGATGATAGAGATAAAGGGGAAGCGGATGATCCGAAGGAAAAGGTGGTGGATCCGAAGGAGAAACCAGTGGTTGAGGAAAATGGAGAAGAAGAAGAAGATTGA
MLVVLDKVLVGNENPEGEAANGEDEVKFWEELEERELWNGELDKDDANKFEVETDDEVPEEDAPKGLDPNKPEPVLPEDGADVPNREAPEPEAGAEAPNNADPELAADAAVPNNGALEVVAEDAPPNKDGADDAPADGAAPNKGADEVPAEEERAPKEGATELPEDGAAPNDGAGELPAPNKEADEVPEEEAAPNKGAEEFADEDEAPNPKELNPVEDEETPNKDEAEGAEEEGTLEEDAPVEAEAREKEKGEEVEEEKEEEPKPKEEEEEGGLEVGLGNGEDEEVGFEEEEEDDRDKGEADDPKEKVVDPKEKPVVEENGEEEED
Homology
BLAST of MELO3C022238.jh1.t1 vs. NCBI nr
Match:
KAA0039742.1 (hypothetical protein E6C27_scaffold122G00020 [Cucumis melo var. makuwa] >TYK24754.1 major centromere autoantigen B [Cucumis melo var. makuwa])
HSP 1 Score: 577 bits (1488), Expect = 1.59e-206
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
BLAST of MELO3C022238.jh1.t1 vs. NCBI nr
Match:
XP_011658400.1 (cilia- and flagella-associated protein 251 [Cucumis sativus])
HSP 1 Score: 131 bits (329), Expect = 1.41e-33
Identity = 96/124 (77.42%), Postives = 102/124 (82.26%), Query Frame = 0
BLAST of MELO3C022238.jh1.t1 vs. ExPASy TrEMBL
Match:
A0A5A7T8D7 (Major centromere autoantigen B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003170 PE=4 SV=1)
HSP 1 Score: 577 bits (1488), Expect = 7.70e-207
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
BLAST of MELO3C022238.jh1.t1 vs. ExPASy TrEMBL
Match:
A0A0A0KDT9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106740 PE=4 SV=1)
HSP 1 Score: 131 bits (329), Expect = 6.85e-34
Identity = 96/124 (77.42%), Postives = 102/124 (82.26%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0039742.1 1.59e-206 100.00 hypothetical protein E6C27_scaffold122G00020 [Cucumis melo var. makuwa] >TYK2475... [more] XP_011658400.1 1.41e-33 77.42 cilia- and flagella-associated protein 251 [Cucumis sativus] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7T8D7 7.70e-207 100.00 Major centromere autoantigen B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more] A0A0A0KDT9 6.85e-34 77.42 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106740 PE=4 SV=1 [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
A T G C T A G T A G T T T T A G A C A A A G T A C T C G T C G G G A A T G A A A A C C C A G A A G G A G A A G C C G C A A A C G G T G A A G A C G A A G T C A A A T T T T G G G A A G A A C T C G A A G A A A G G G A G C T C T G G A A T G G A G A G C T G G A T A A A G A T G A C G C A A A C A A G T T C G A A G T G G A A A C C G A T G A C G A A G T G C C T G A A G A A G A T G C A C C A A A G G G A C T A G A C C C A A A C A A A C C T G A A C C T G T A C T T C C T G A A G A T G G A G C C G A T G T C C C A A A C A G A G A G G C A C C A G A A C C T G A A G C G G G A G C A G A G G C A C C A A A C A A C G C C G A T C C C G A A C T T G C A G C G G A T G C A G C T G T G C C G A A C A A T G G T G C A C T G G A A G T A G T T G C A G A A G A C G C C C C T C C A A A C A A G G A C G G A G C C G A T G A T G C C C C T G C A G A T G G A G C A G C C C C A A A C A A G G G C G C A G A T G A G G T C C C A G C A G A G G A G G A A A G A G C C C C A A A G G A A G G C G C A A C T G A G C T C C C A G A G G A T G G A G C A G C C C C A A A C G A C G G C G C A G G T G A G C T C C C A G C C C C A A A C A A G G A G G C A G A T G A G G T C C C G G A G G A G G A A G C A G C C C C A A A C A A G G G A G C G G A G G A G T T T G C T G A T G A A G A T G A A G C C C C G A A T C C G A A A G A A T T G A A T C C C G T T G A G G A T G A A G A A A C C C C A A A T A A G G A C G A A G C T G A A G G T G C T G A G G A A G A A G G A A C G C T A G A G G A A G A T G C T C C G G T G G A A G C G G A G G C G A G G G A G A A A G A G A A G G G A G A G G A A G T A G A G G A G G A G A A A G A G G A A G A G C C A A A G C C A A A G G A A G A A G A A G A A G A A G G C G G A T T G G A G G T T G G A T T G G G A A A C G G G G A G G A C G A G G A A G T A G G G T T T G A G G A G G A G G A G G A A G A T G A T A G A G A T A A A G G G G A A G C G G A T G A T C C G A A G G A A A A G G T G G T G G A T C C G A A G G A G A A A C C A G T G G T T G A G G A A A A T G G A G A A G A A G A A G A A G A T T G A G A G G T G G A A G A T C C A A A G C C G A A A C C C G A C A T C T C G A T C G A T C T C C G G T G G A A A A G A C T G A A A T G A A G G G T T T T A G A A G G T T T T A G A G G T C A T C A G T A T G A A C A T A T G A A A T G T C C C A T T T G C C C T T T T G C T A A G A A A T A G A T C G A T C G G G C A A C G A C G G C G A A C G G A G G A A A T C G G G A T T G G A C A G C A T C G T G G A C G G C G G T G 100 200 300 400 500 600 700 800 900 1000 1100 Score = Score = Score = Score = Score = Score = Score = Score = Score = Sequence Coil mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 242..262 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 38..326 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 182..220 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 221..239 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 300..318 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 255..299 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..26 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 146..161 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 240..254
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
MELO3C022238.jh1.t1.exon MELO3C022238.jh1.t1.exon exon
The following start_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
MELO3C022238.jh1.t1.start_codon MELO3C022238.jh1.t1.start_codon start_codon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
MELO3C022238.jh1.t1.cds MELO3C022238.jh1.t1.cds CDS
The following stop_codon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
MELO3C022238.jh1.t1.stop_codon MELO3C022238.jh1.t1.stop_codon stop_codon
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
MELO3C022238.jh1.t1 MELO3C022238.jh1.t1-protein polypeptide
