MELO3C022238.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C022238.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Major centromere autoantigen B
Location	chr11: 32052374 .. 32053558 (+)
RNA-Seq Expression	MELO3C022238.jh1
Synteny	MELO3C022238.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGTAGTTTTAGACAAAGTACTCGTCGGGAATGAAAACCCAGAAGGAGAAGCCGCAAACGGTGAAGACGAAGTCAAATTTTGGGAAGAACTCGAAGAAAGGGAGCTCTGGAATGGAGAGCTGGATAAAGATGACGCAAACAAGTTCGAAGTGGAAACCGATGACGAAGTGCCTGAAGAAGATGCACCAAAGGGACTAGACCCAAACAAACCTGAACCTGTACTTCCTGAAGATGGAGCCGATGTCCCAAACAGAGAGGCACCAGAACCTGAAGCGGGAGCAGAGGCACCAAACAACGCCGATCCCGAACTTGCAGCGGATGCAGCTGTGCCGAACAATGGTGCACTGGAAGTAGTTGCAGAAGACGCCCCTCCAAACAAGGACGGAGCCGATGATGCCCCTGCAGATGGAGCAGCCCCAAACAAGGGCGCAGATGAGGTCCCAGCAGAGGAGGAAAGAGCCCCAAAGGAAGGCGCAACTGAGCTCCCAGAGGATGGAGCAGCCCCAAACGACGGCGCAGGTGAGCTCCCAGCCCCAAACAAGGAGGCAGATGAGGTCCCGGAGGAGGAAGCAGCCCCAAACAAGGGAGCGGAGGAGTTTGCTGATGAAGATGAAGCCCCGAATCCGAAAGAATTGAATCCCGTTGAGGATGAAGAAACCCCAAATAAGGACGAAGCTGAAGGTGCTGAGGAAGAAGGAACGCTAGAGGAAGATGCTCCGGTGGAAGCGGAGGCGAGGGAGAAAGAGAAGGGAGAGGAAGTAGAGGAGGAGAAAGAGGAAGAGCCAAAGCCAAAGGAAGAAGAAGAAGAAGGCGGATTGGAGGTTGGATTGGGAAACGGGGAGGACGAGGAAGTAGGGTTTGAGGAGGAGGAGGAAGATGATAGAGATAAAGGGGAAGCGGATGATCCGAAGGAAAAGGTGGTGGATCCGAAGGAGAAACCAGTGGTTGAGGAAAATGGAGAAGAAGAAGAAGATTGAGAGGTGGAAGATCCAAAGCCGAAACCCGACATCTCGATCGATCTCCGGTGGAAAAGACTGAAATGAAGGGTTTTAGAAGGTTTTAGAGGTCATCAGTATGAACATATGAAATGTCCCATTTGCCCTTTTGCTAAGAAATAGATCGATCGGGCAACGACGGCGAACGGAGGAAATCGGGATTGGACAGCATCGTGGACGGCGGTG

mRNA sequence

ATGCTAGTAGTTTTAGACAAAGTACTCGTCGGGAATGAAAACCCAGAAGGAGAAGCCGCAAACGGTGAAGACGAAGTCAAATTTTGGGAAGAACTCGAAGAAAGGGAGCTCTGGAATGGAGAGCTGGATAAAGATGACGCAAACAAGTTCGAAGTGGAAACCGATGACGAAGTGCCTGAAGAAGATGCACCAAAGGGACTAGACCCAAACAAACCTGAACCTGTACTTCCTGAAGATGGAGCCGATGTCCCAAACAGAGAGGCACCAGAACCTGAAGCGGGAGCAGAGGCACCAAACAACGCCGATCCCGAACTTGCAGCGGATGCAGCTGTGCCGAACAATGGTGCACTGGAAGTAGTTGCAGAAGACGCCCCTCCAAACAAGGACGGAGCCGATGATGCCCCTGCAGATGGAGCAGCCCCAAACAAGGGCGCAGATGAGGTCCCAGCAGAGGAGGAAAGAGCCCCAAAGGAAGGCGCAACTGAGCTCCCAGAGGATGGAGCAGCCCCAAACGACGGCGCAGGTGAGCTCCCAGCCCCAAACAAGGAGGCAGATGAGGTCCCGGAGGAGGAAGCAGCCCCAAACAAGGGAGCGGAGGAGTTTGCTGATGAAGATGAAGCCCCGAATCCGAAAGAATTGAATCCCGTTGAGGATGAAGAAACCCCAAATAAGGACGAAGCTGAAGGTGCTGAGGAAGAAGGAACGCTAGAGGAAGATGCTCCGGTGGAAGCGGAGGCGAGGGAGAAAGAGAAGGGAGAGGAAGTAGAGGAGGAGAAAGAGGAAGAGCCAAAGCCAAAGGAAGAAGAAGAAGAAGGCGGATTGGAGGTTGGATTGGGAAACGGGGAGGACGAGGAAGTAGGGTTTGAGGAGGAGGAGGAAGATGATAGAGATAAAGGGGAAGCGGATGATCCGAAGGAAAAGGTGGTGGATCCGAAGGAGAAACCAGTGGTTGAGGAAAATGGAGAAGAAGAAGAAGATTGAGAGGTGGAAGATCCAAAGCCGAAACCCGACATCTCGATCGATCTCCGGTGGAAAAGACTGAAATGAAGGGTTTTAGAAGGTTTTAGAGGTCATCAGTATGAACATATGAAATGTCCCATTTGCCCTTTTGCTAAGAAATAGATCGATCGGGCAACGACGGCGAACGGAGGAAATCGGGATTGGACAGCATCGTGGACGGCGGTG

Coding sequence (CDS)

ATGCTAGTAGTTTTAGACAAAGTACTCGTCGGGAATGAAAACCCAGAAGGAGAAGCCGCAAACGGTGAAGACGAAGTCAAATTTTGGGAAGAACTCGAAGAAAGGGAGCTCTGGAATGGAGAGCTGGATAAAGATGACGCAAACAAGTTCGAAGTGGAAACCGATGACGAAGTGCCTGAAGAAGATGCACCAAAGGGACTAGACCCAAACAAACCTGAACCTGTACTTCCTGAAGATGGAGCCGATGTCCCAAACAGAGAGGCACCAGAACCTGAAGCGGGAGCAGAGGCACCAAACAACGCCGATCCCGAACTTGCAGCGGATGCAGCTGTGCCGAACAATGGTGCACTGGAAGTAGTTGCAGAAGACGCCCCTCCAAACAAGGACGGAGCCGATGATGCCCCTGCAGATGGAGCAGCCCCAAACAAGGGCGCAGATGAGGTCCCAGCAGAGGAGGAAAGAGCCCCAAAGGAAGGCGCAACTGAGCTCCCAGAGGATGGAGCAGCCCCAAACGACGGCGCAGGTGAGCTCCCAGCCCCAAACAAGGAGGCAGATGAGGTCCCGGAGGAGGAAGCAGCCCCAAACAAGGGAGCGGAGGAGTTTGCTGATGAAGATGAAGCCCCGAATCCGAAAGAATTGAATCCCGTTGAGGATGAAGAAACCCCAAATAAGGACGAAGCTGAAGGTGCTGAGGAAGAAGGAACGCTAGAGGAAGATGCTCCGGTGGAAGCGGAGGCGAGGGAGAAAGAGAAGGGAGAGGAAGTAGAGGAGGAGAAAGAGGAAGAGCCAAAGCCAAAGGAAGAAGAAGAAGAAGGCGGATTGGAGGTTGGATTGGGAAACGGGGAGGACGAGGAAGTAGGGTTTGAGGAGGAGGAGGAAGATGATAGAGATAAAGGGGAAGCGGATGATCCGAAGGAAAAGGTGGTGGATCCGAAGGAGAAACCAGTGGTTGAGGAAAATGGAGAAGAAGAAGAAGATTGA

Protein sequence

MLVVLDKVLVGNENPEGEAANGEDEVKFWEELEERELWNGELDKDDANKFEVETDDEVPEEDAPKGLDPNKPEPVLPEDGADVPNREAPEPEAGAEAPNNADPELAADAAVPNNGALEVVAEDAPPNKDGADDAPADGAAPNKGADEVPAEEERAPKEGATELPEDGAAPNDGAGELPAPNKEADEVPEEEAAPNKGAEEFADEDEAPNPKELNPVEDEETPNKDEAEGAEEEGTLEEDAPVEAEAREKEKGEEVEEEKEEEPKPKEEEEEGGLEVGLGNGEDEEVGFEEEEEDDRDKGEADDPKEKVVDPKEKPVVEENGEEEED

Homology

[Close]

BLAST of MELO3C022238.jh1 vs. NCBI nr
Match: KAA0039742.1 (hypothetical protein E6C27_scaffold122G00020 [Cucumis melo var. makuwa] >TYK24754.1 major centromere autoantigen B [Cucumis melo var. makuwa])

HSP 1 Score: 577 bits (1488), Expect = 1.59e-206
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0


Query: 1   MLVVLDKVLVGNENPEGEAANGEDEVKFWEELEERELWNGELDKDDANKFEVETDDEVPE 60
           MLVVLDKVLVGNENPEGEAANGEDEVKFWEELEERELWNGELDKDDANKFEVETDDEVPE
Sbjct: 1   MLVVLDKVLVGNENPEGEAANGEDEVKFWEELEERELWNGELDKDDANKFEVETDDEVPE 60

Query: 61  EDAPKGLDPNKPEPVLPEDGADVPNREAPEPEAGAEAPNNADPELAADAAVPNNGALEVV 120
           EDAPKGLDPNKPEPVLPEDGADVPNREAPEPEAGAEAPNNADPELAADAAVPNNGALEVV
Sbjct: 61  EDAPKGLDPNKPEPVLPEDGADVPNREAPEPEAGAEAPNNADPELAADAAVPNNGALEVV 120

Query: 121 AEDAPPNKDGADDAPADGAAPNKGADEVPAEEERAPKEGATELPEDGAAPNDGAGELPAP 180
           AEDAPPNKDGADDAPADGAAPNKGADEVPAEEERAPKEGATELPEDGAAPNDGAGELPAP
Sbjct: 121 AEDAPPNKDGADDAPADGAAPNKGADEVPAEEERAPKEGATELPEDGAAPNDGAGELPAP 180

Query: 181 NKEADEVPEEEAAPNKGAEEFADEDEAPNPKELNPVEDEETPNKDEAEGAEEEGTLEEDA 240
           NKEADEVPEEEAAPNKGAEEFADEDEAPNPKELNPVEDEETPNKDEAEGAEEEGTLEEDA
Sbjct: 181 NKEADEVPEEEAAPNKGAEEFADEDEAPNPKELNPVEDEETPNKDEAEGAEEEGTLEEDA 240

Query: 241 PVEAEAREKEKGEEVEEEKEEEPKPKEEEEEGGLEVGLGNGEDEEVGFEEEEEDDRDKGE 300
           PVEAEAREKEKGEEVEEEKEEEPKPKEEEEEGGLEVGLGNGEDEEVGFEEEEEDDRDKGE
Sbjct: 241 PVEAEAREKEKGEEVEEEKEEEPKPKEEEEEGGLEVGLGNGEDEEVGFEEEEEDDRDKGE 300

Query: 301 ADDPKEKVVDPKEKPVVEENGEEEED 326
           ADDPKEKVVDPKEKPVVEENGEEEED
Sbjct: 301 ADDPKEKVVDPKEKPVVEENGEEEED 326

[Close]

BLAST of MELO3C022238.jh1 vs. NCBI nr
Match: XP_011658400.1 (cilia- and flagella-associated protein 251 [Cucumis sativus])

HSP 1 Score: 131 bits (329), Expect = 1.41e-33
Identity = 96/124 (77.42%), Postives = 102/124 (82.26%), Query Frame = 0


Query: 201 FADEDEAPNPKELNPVEDEETPNKDEAEGAEEEGTLEEDAPVEAEAREKEKGE---EVEE 260
           FADE+EA N KELNPVEDEET NKDEA  AEEEG LE+DA VEAEAREKE GE   EVEE
Sbjct: 15  FADENEALNAKELNPVEDEETLNKDEAGVAEEEGVLEKDALVEAEAREKENGEKVEEVEE 74

Query: 261 EKEEEPKPKEEEEEGGLEVGLGNGEDEEVGFEEEEE----DDRDKGEADDPKEKVVDPKE 317
           EKE+EPKPKEEE   GLEVGLGNGEDEEVGFEEEEE    D+RDKG+ DDPKEKV DPK 
Sbjct: 75  EKEKEPKPKEEE---GLEVGLGNGEDEEVGFEEEEEEEEEDERDKGKGDDPKEKVEDPKP 134

[Close]

BLAST of MELO3C022238.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T8D7 (Major centromere autoantigen B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003170 PE=4 SV=1)

HSP 1 Score: 577 bits (1488), Expect = 7.70e-207
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0


Query: 1   MLVVLDKVLVGNENPEGEAANGEDEVKFWEELEERELWNGELDKDDANKFEVETDDEVPE 60
           MLVVLDKVLVGNENPEGEAANGEDEVKFWEELEERELWNGELDKDDANKFEVETDDEVPE
Sbjct: 1   MLVVLDKVLVGNENPEGEAANGEDEVKFWEELEERELWNGELDKDDANKFEVETDDEVPE 60

Query: 61  EDAPKGLDPNKPEPVLPEDGADVPNREAPEPEAGAEAPNNADPELAADAAVPNNGALEVV 120
           EDAPKGLDPNKPEPVLPEDGADVPNREAPEPEAGAEAPNNADPELAADAAVPNNGALEVV
Sbjct: 61  EDAPKGLDPNKPEPVLPEDGADVPNREAPEPEAGAEAPNNADPELAADAAVPNNGALEVV 120

Query: 121 AEDAPPNKDGADDAPADGAAPNKGADEVPAEEERAPKEGATELPEDGAAPNDGAGELPAP 180
           AEDAPPNKDGADDAPADGAAPNKGADEVPAEEERAPKEGATELPEDGAAPNDGAGELPAP
Sbjct: 121 AEDAPPNKDGADDAPADGAAPNKGADEVPAEEERAPKEGATELPEDGAAPNDGAGELPAP 180

Query: 181 NKEADEVPEEEAAPNKGAEEFADEDEAPNPKELNPVEDEETPNKDEAEGAEEEGTLEEDA 240
           NKEADEVPEEEAAPNKGAEEFADEDEAPNPKELNPVEDEETPNKDEAEGAEEEGTLEEDA
Sbjct: 181 NKEADEVPEEEAAPNKGAEEFADEDEAPNPKELNPVEDEETPNKDEAEGAEEEGTLEEDA 240

Query: 241 PVEAEAREKEKGEEVEEEKEEEPKPKEEEEEGGLEVGLGNGEDEEVGFEEEEEDDRDKGE 300
           PVEAEAREKEKGEEVEEEKEEEPKPKEEEEEGGLEVGLGNGEDEEVGFEEEEEDDRDKGE
Sbjct: 241 PVEAEAREKEKGEEVEEEKEEEPKPKEEEEEGGLEVGLGNGEDEEVGFEEEEEDDRDKGE 300

Query: 301 ADDPKEKVVDPKEKPVVEENGEEEED 326
           ADDPKEKVVDPKEKPVVEENGEEEED
Sbjct: 301 ADDPKEKVVDPKEKPVVEENGEEEED 326

[Close]

BLAST of MELO3C022238.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KDT9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106740 PE=4 SV=1)

HSP 1 Score: 131 bits (329), Expect = 6.85e-34
Identity = 96/124 (77.42%), Postives = 102/124 (82.26%), Query Frame = 0


Query: 201 FADEDEAPNPKELNPVEDEETPNKDEAEGAEEEGTLEEDAPVEAEAREKEKGE---EVEE 260
           FADE+EA N KELNPVEDEET NKDEA  AEEEG LE+DA VEAEAREKE GE   EVEE
Sbjct: 15  FADENEALNAKELNPVEDEETLNKDEAGVAEEEGVLEKDALVEAEAREKENGEKVEEVEE 74

Query: 261 EKEEEPKPKEEEEEGGLEVGLGNGEDEEVGFEEEEE----DDRDKGEADDPKEKVVDPKE 317
           EKE+EPKPKEEE   GLEVGLGNGEDEEVGFEEEEE    D+RDKG+ DDPKEKV DPK 
Sbjct: 75  EKEKEPKPKEEE---GLEVGLGNGEDEEVGFEEEEEEEEEDERDKGKGDDPKEKVEDPKP 134

The following BLAST results are available for this feature:

BLAST of MELO3C022238.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039742.1	1.59e-206	100.00	hypothetical protein E6C27_scaffold122G00020 [Cucumis melo var. makuwa] >TYK2475...	[more]
XP_011658400.1	1.41e-33	77.42	cilia- and flagella-associated protein 251 [Cucumis sativus]	[more]

BLAST of MELO3C022238.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C022238.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T8D7	7.70e-207	100.00	Major centromere autoantigen B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KDT9	6.85e-34	77.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106740 PE=4 SV=1	[more]

BLAST of MELO3C022238.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 242..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..326
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..318
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..299
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022238.jh1.t1	MELO3C022238.jh1.t1	mRNA