MELO3C012374.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C012374.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
Location	chr10: 909860 .. 911662 (-)
Sequence length	675
RNA-Seq Expression	MELO3C012374.jh1.t1
Synteny	MELO3C012374.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGAAACAAAATATTGTTCCGATTGGGGGAGGCGGCGGTGGCGGAGAGGAAGTCGTGATCTTACGACATGGCTGAGAATAAAGAACATATTATCCAAAACCCTAAATTGCCAAGTTTTGTGCTAAATAATAATCGGCAGAAAGTTGTGGATCAGAAGAAAGAAGAAACTAATCCTCCTGAGAAGCCTGACGTAGTCACTATTCCGGCATCGGGAGTGGTTTCCCCTCCGCCGGTGAAGGCTGAGTTCAAGTTCCCTGGGAAGTTCTCACATCCGGCTGTCCTGTGGCCGGTATGATCATTCCTTCTCCCACTCTCATTATATCTCTCATATGTGCTGTCGATTTTTCTGTTTTAAATTTGTACTGGTCTTTTTTTTGGAGAAAAGTTTTTCTTTCTTTTAGTTTTGGCTTCTAAAACATTGCATTTTAGTTCGGTTTAATTTTGAGTTTGATTTTAATTCATTTTAGTTTATAAATTTTAAAAGTTAATACTGAAAAACTATCCTATGATAATAATGGTTTAATTGTCACCTTCAAGATGAAAGGAGTCATATTTTAAAATTTAGGAATTAAGTTAAAATTAAATTTAAAACTTAAAATTGAAAAAAAAAAAAAGATAATTTAAAAATTAAATAGATACTTGCACCAAAATTAGAGACCAAAGAAATATTTTTCTCATATGTCTAAGATTTATTAAACACAATTTTAAGCTTAGGTTTTTTAATCTAAACTTAGCTATTTAACATGACATTTAATTATAAAGGTGATAAATTCTATCTTCATTCCAAAACTCTGAAATGTAGGTTTTTAAATTTAGTCGTTAGATAATTATTTTATTTTCTAAATTTTCGGTTGATTTTCATATGGAAAATTATCCTCCCGTTTGATTTGTTTAGAGATGGGTGCAATAATTTTAATGGATTAAATAGTTAGTTAATTTCTCGTGAAAAATCCTTTATCCAAATATCATTATATTCCTATAAATAACTTGAGTTCAAAACATTTCAATAAACCAATATACATGTTTGTGTTTATGTGCGATTGTATATGTAATAGTTTTTTGTTAAAAATAATTAACGAAGAAAATAAATGGGTGAGAAACGGAGATTTGAATGCATTCTCCGTCTCTGTTTAACTCTTGGAAATTCATAGAGATGAGTCCTCATGGAGCTCTGGCTCGAAAAAGTAGACATTTTTATATGTACTGCAACTTAGCTATCCATGAAGAATTACTCATTTAATTTCTTTGTAAACAGTTTTCCCAATCAAAATTCATGGGTGCAATGCAAATGCTCTATTAGTTTATAATGCAGCATTTTTATTGTATATATATATATATATATATATATATATATATATATGATTTATGAAAAGAATAAAAATTGTTTTAATGGTAATTCATTTCCATCTACTTTCAGTTATCTGCTTTAGGAGGATTTCTCATCTTATGGTGGGCTTGGAAAAAATGGAGACCTGACGACGACGAAACGAAAAAAAAATGATATTTGATTTCTATATTGGAAGCAATCGATAATTATAAGCATTTGAAAATTTAATGCAGTTTGTTACTCTATATTATTTAGTTTATACTGATTCGTCATGTGATTGCCAATTTATTTATAAATTTGAGCCATGACAATAAGGCTTCCAGTGATATTCTTTAATTACTATAATTGTTGTAATTAATTATAGTATTTTGATACTTTTACGATCATATAAGTAATATGAGTTAAAGAGATAACTCCATCTCACTCGTTGTTTAATTCTTTTAATAAAATAAAGTCAAAATATCTTAAATAAAA

mRNA sequence

AAGAGAAACAAAATATTGTTCCGATTGGGGGAGGCGGCGGTGGCGGAGAGGAAGTCGTGATCTTACGACATGGCTGAGAATAAAGAACATATTATCCAAAACCCTAAATTGCCAAGTTTTGTGCTAAATAATAATCGGCAGAAAGTTGTGGATCAGAAGAAAGAAGAAACTAATCCTCCTGAGAAGCCTGACGTAGTCACTATTCCGGCATCGGGAGTGGTTTCCCCTCCGCCGGTGAAGGCTGAGTTCAAGTTCCCTGGGAAGTTCTCACATCCGGCTGTCCTGTGGCCGTTATCTGCTTTAGGAGGATTTCTCATCTTATGGTGGGCTTGGAAAAAATGGAGACCTGACGACGACGAAACGAAAAAAAAATGATATTTGATTTCTATATTGGAAGCAATCGATAATTATAAGCATTTGAAAATTTAATGCAGTTTGTTACTCTATATTATTTAGTTTATACTGATTCGTCATGTGATTGCCAATTTATTTATAAATTTGAGCCATGACAATAAGGCTTCCAGTGATATTCTTTAATTACTATAATTGTTGTAATTAATTATAGTATTTTGATACTTTTACGATCATATAAGTAATATGAGTTAAAGAGATAACTCCATCTCACTCGTTGTTTAATTCTTTTAATAAAATAAAGTCAAAATATCTTAAATAAAA

Coding sequence (CDS)

ATGGCTGAGAATAAAGAACATATTATCCAAAACCCTAAATTGCCAAGTTTTGTGCTAAATAATAATCGGCAGAAAGTTGTGGATCAGAAGAAAGAAGAAACTAATCCTCCTGAGAAGCCTGACGTAGTCACTATTCCGGCATCGGGAGTGGTTTCCCCTCCGCCGGTGAAGGCTGAGTTCAAGTTCCCTGGGAAGTTCTCACATCCGGCTGTCCTGTGGCCGTTATCTGCTTTAGGAGGATTTCTCATCTTATGGTGGGCTTGGAAAAAATGGAGACCTGACGACGACGAAACGAAAAAAAAATGA

Protein sequence

MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETKKK

Homology

[Close]

BLAST of MELO3C012374.jh1.t1 vs. NCBI nr
Match: XP_008446792.1 (PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo])

HSP 1 Score: 208 bits (529), Expect = 1.03e-67
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60
           MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF
Sbjct: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60

Query: 61  KFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETKK 100
           KFPGKFSHPAVLWPLSALGGFLI+WWAW+KWRPDDDETKK
Sbjct: 61  KFPGKFSHPAVLWPLSALGGFLIIWWAWQKWRPDDDETKK 100

[Close]

BLAST of MELO3C012374.jh1.t1 vs. NCBI nr
Match: KAA0034675.1 (uncharacterized protein E6C27_scaffold65G006940 [Cucumis melo var. makuwa] >TYK09226.1 uncharacterized protein E5676_scaffold475G002190 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (383), Expect = 8.27e-46
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60
          MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF
Sbjct: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60

Query: 61 KFPGKFSHPAVLWPL 75
          KFPGKFSHPAVLWP+
Sbjct: 61 KFPGKFSHPAVLWPV 75

[Close]

BLAST of MELO3C012374.jh1.t1 vs. NCBI nr
Match: XP_011655848.1 (uncharacterized protein LOC101213355 [Cucumis sativus] >KGN52215.1 hypothetical protein Csa_008804 [Cucumis sativus])

HSP 1 Score: 137 bits (345), Expect = 1.18e-39
Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MAENKEHIIQNPKLPSFVLNNNRQKV--VDQKKEETNPPE-KPDVVTIPASGVVSPPPVK 60
           MAEN+E+I++NPKLPSFV NN RQK+  VDQKKEE N PE K +VVTIPA  VV PPP+K
Sbjct: 1   MAENEENIMRNPKLPSFVRNN-RQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIK 60

Query: 61  AEFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETKKK 101
           AE K  GKFSHPA++W L ALGGF I+ +AWKKW+P DDETKKK
Sbjct: 61  AEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK 103

[Close]

BLAST of MELO3C012374.jh1.t1 vs. NCBI nr
Match: XP_022957161.1 (uncharacterized protein LOC111458630 [Cucurbita moschata])

HSP 1 Score: 95.5 bits (236), Expect = 6.95e-23
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MAENKEHIIQNPKLP-SFVLNNNRQKVVDQKKEETN-PPEKPDVVTIPASGVVSPPPVKA 60
           M +N++ +  NP+L  S+  + N  K+ D +++ +  PP KP++VT+P S V  PPP+ A
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTA 76

Query: 61  EFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETK 99
           E K PGKFSHPA+ WPL ALGGFLI  WA KKW+  +DE K
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 117

[Close]

BLAST of MELO3C012374.jh1.t1 vs. NCBI nr
Match: KAG7031999.1 (hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.7 bits (234), Expect = 8.95e-23
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MAENKEHIIQNPKLP-SFVLNNNRQKVVDQKKEETN-PPEKPDVVTIPASGVVSPPPVKA 60
           M +N++ +  NP+L  S+  + N  K+ D +++ +  PP KP++VT+P S V  PPP+ A
Sbjct: 1   MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTA 60

Query: 61  EFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETK 99
           E K PGKFSHPA+ WPL ALGGFLI  WA KKW+  +DE K
Sbjct: 61  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 101

[Close]

BLAST of MELO3C012374.jh1.t1 vs. ExPASy TrEMBL
Match: A0A1S3BGK5 (uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 4.98e-68
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60
           MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF
Sbjct: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60

Query: 61  KFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETKK 100
           KFPGKFSHPAVLWPLSALGGFLI+WWAW+KWRPDDDETKK
Sbjct: 61  KFPGKFSHPAVLWPLSALGGFLIIWWAWQKWRPDDDETKK 100

[Close]

BLAST of MELO3C012374.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3CFU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002190 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 4.00e-46
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60
          MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF
Sbjct: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60

Query: 61 KFPGKFSHPAVLWPL 75
          KFPGKFSHPAVLWP+
Sbjct: 61 KFPGKFSHPAVLWPV 75

[Close]

BLAST of MELO3C012374.jh1.t1 vs. ExPASy TrEMBL
Match: A0A0A0KRF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 5.73e-40
Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MAENKEHIIQNPKLPSFVLNNNRQKV--VDQKKEETNPPE-KPDVVTIPASGVVSPPPVK 60
           MAEN+E+I++NPKLPSFV NN RQK+  VDQKKEE N PE K +VVTIPA  VV PPP+K
Sbjct: 1   MAENEENIMRNPKLPSFVRNN-RQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIK 60

Query: 61  AEFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETKKK 101
           AE K  GKFSHPA++W L ALGGF I+ +AWKKW+P DDETKKK
Sbjct: 61  AEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK 103

[Close]

BLAST of MELO3C012374.jh1.t1 vs. ExPASy TrEMBL
Match: A0A6J1GYG5 (uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC111458630 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.36e-23
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MAENKEHIIQNPKLP-SFVLNNNRQKVVDQKKEETN-PPEKPDVVTIPASGVVSPPPVKA 60
           M +N++ +  NP+L  S+  + N  K+ D +++ +  PP KP++VT+P S V  PPP+ A
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTA 76

Query: 61  EFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETK 99
           E K PGKFSHPA+ WPL ALGGFLI  WA KKW+  +DE K
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 117

[Close]

BLAST of MELO3C012374.jh1.t1 vs. ExPASy TrEMBL
Match: A0A6J1J8Z1 (uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.34e-22
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETN-PPEKPDVVTIPASGVVSPPPVKAE 60
          M E ++ +  NPK+  F    NR K  D ++E +  PP+KP+VVT+P S V  PPP+ AE
Sbjct: 1  MVEYRDIVPTNPKVAWF-WPRNRDKSGDNEEEPSPMPPQKPNVVTLPGSEVAPPPPLAAE 60

Query: 61 FKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETK 99
           K PGKFSHPA+ W L ALGGF+I  WA K+W+  +DE K
Sbjct: 61 CKRPGKFSHPAIRWSLYALGGFIIARWALKRWKSGEDEGK 99

[Close]

BLAST of MELO3C012374.jh1.t1 vs. TAIR 10
Match: AT3G52230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.3e-07
Identity = 31/91 (34.07%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 12  PKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEFK-FPGKFSHPA 71
           PK P   ++ N  K   +K+   +  E    VT P +   S  P+K E +   G+ S+  
Sbjct: 35  PKPPPATIDANAPKPTGEKEPLKSTYE---TVTFPYNPPKSAEPIKFEAEPSSGRTSNSV 94

Query: 72  VLWPLSALGGFLILWWAWKKWRPDDDETKKK 102
           +LW + ALGGFL+L WAW +W   ++ + KK
Sbjct: 95  ILWQVYALGGFLVLKWAWARWNERNERSDKK 122

The following BLAST results are available for this feature:

BLAST of MELO3C012374.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446792.1	1.03e-67	98.00	PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo]	[more]
KAA0034675.1	8.27e-46	98.67	uncharacterized protein E6C27_scaffold65G006940 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_011655848.1	1.18e-39	70.19	uncharacterized protein LOC101213355 [Cucumis sativus] >KGN52215.1 hypothetical ...	[more]
XP_022957161.1	6.95e-23	49.50	uncharacterized protein LOC111458630 [Cucurbita moschata]	[more]
KAG7031999.1	8.95e-23	49.50	hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MELO3C012374.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C012374.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BGK5	4.98e-68	98.00	uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=...	[more]
A0A5D3CFU1	4.00e-46	98.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KRF3	5.73e-40	70.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1	[more]
A0A6J1GYG5	3.36e-23	49.50	uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]
A0A6J1J8Z1	3.34e-22	50.00	uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672...	[more]

BLAST of MELO3C012374.jh1.t1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52230.1	3.3e-07	34.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..48
None	No IPR available	PANTHER	PTHR36374	OS01G0969000 PROTEIN	coord: 12..101
None	No IPR available	PANTHER	PTHR36374:SF1	OS01G0969000 PROTEIN	coord: 12..101

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012374.jh1	MELO3C012374.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012374.jh1.t1.exon	MELO3C012374.jh1.t1.exon	exon
MELO3C012374.jh1.t1.exon	MELO3C012374.jh1.t1.exon_2	exon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012374.jh1.t1.stop_codon	MELO3C012374.jh1.t1.stop_codon	stop_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012374.jh1.t1.cds	MELO3C012374.jh1.t1.cds	CDS
MELO3C012374.jh1.t1.cds	MELO3C012374.jh1.t1.cds_2	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012374.jh1.t1.start_codon	MELO3C012374.jh1.t1.start_codon	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C012374.jh1.t1	MELO3C012374.jh1.t1-protein	polypeptide