MELO3C012374.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C012374.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionDihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
Locationchr10: 909860 .. 911662 (-)
RNA-Seq ExpressionMELO3C012374.jh1
SyntenyMELO3C012374.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAGAAACAAAATATTGTTCCGATTGGGGGAGGCGGCGGTGGCGGAGAGGAAGTCGTGATCTTACGACATGGCTGAGAATAAAGAACATATTATCCAAAACCCTAAATTGCCAAGTTTTGTGCTAAATAATAATCGGCAGAAAGTTGTGGATCAGAAGAAAGAAGAAACTAATCCTCCTGAGAAGCCTGACGTAGTCACTATTCCGGCATCGGGAGTGGTTTCCCCTCCGCCGGTGAAGGCTGAGTTCAAGTTCCCTGGGAAGTTCTCACATCCGGCTGTCCTGTGGCCGGTATGATCATTCCTTCTCCCACTCTCATTATATCTCTCATATGTGCTGTCGATTTTTCTGTTTTAAATTTGTACTGGTCTTTTTTTTGGAGAAAAGTTTTTCTTTCTTTTAGTTTTGGCTTCTAAAACATTGCATTTTAGTTCGGTTTAATTTTGAGTTTGATTTTAATTCATTTTAGTTTATAAATTTTAAAAGTTAATACTGAAAAACTATCCTATGATAATAATGGTTTAATTGTCACCTTCAAGATGAAAGGAGTCATATTTTAAAATTTAGGAATTAAGTTAAAATTAAATTTAAAACTTAAAATTGAAAAAAAAAAAAAGATAATTTAAAAATTAAATAGATACTTGCACCAAAATTAGAGACCAAAGAAATATTTTTCTCATATGTCTAAGATTTATTAAACACAATTTTAAGCTTAGGTTTTTTAATCTAAACTTAGCTATTTAACATGACATTTAATTATAAAGGTGATAAATTCTATCTTCATTCCAAAACTCTGAAATGTAGGTTTTTAAATTTAGTCGTTAGATAATTATTTTATTTTCTAAATTTTCGGTTGATTTTCATATGGAAAATTATCCTCCCGTTTGATTTGTTTAGAGATGGGTGCAATAATTTTAATGGATTAAATAGTTAGTTAATTTCTCGTGAAAAATCCTTTATCCAAATATCATTATATTCCTATAAATAACTTGAGTTCAAAACATTTCAATAAACCAATATACATGTTTGTGTTTATGTGCGATTGTATATGTAATAGTTTTTTGTTAAAAATAATTAACGAAGAAAATAAATGGGTGAGAAACGGAGATTTGAATGCATTCTCCGTCTCTGTTTAACTCTTGGAAATTCATAGAGATGAGTCCTCATGGAGCTCTGGCTCGAAAAAGTAGACATTTTTATATGTACTGCAACTTAGCTATCCATGAAGAATTACTCATTTAATTTCTTTGTAAACAGTTTTCCCAATCAAAATTCATGGGTGCAATGCAAATGCTCTATTAGTTTATAATGCAGCATTTTTATTGTATATATATATATATATATATATATATATATATATATGATTTATGAAAAGAATAAAAATTGTTTTAATGGTAATTCATTTCCATCTACTTTCAGTTATCTGCTTTAGGAGGATTTCTCATCTTATGGTGGGCTTGGAAAAAATGGAGACCTGACGACGACGAAACGAAAAAAAAATGATATTTGATTTCTATATTGGAAGCAATCGATAATTATAAGCATTTGAAAATTTAATGCAGTTTGTTACTCTATATTATTTAGTTTATACTGATTCGTCATGTGATTGCCAATTTATTTATAAATTTGAGCCATGACAATAAGGCTTCCAGTGATATTCTTTAATTACTATAATTGTTGTAATTAATTATAGTATTTTGATACTTTTACGATCATATAAGTAATATGAGTTAAAGAGATAACTCCATCTCACTCGTTGTTTAATTCTTTTAATAAAATAAAGTCAAAATATCTTAAATAAAA

mRNA sequence

AAGAGAAACAAAATATTGTTCCGATTGGGGGAGGCGGCGGTGGCGGAGAGGAAGTCGTGATCTTACGACATGGCTGAGAATAAAGAACATATTATCCAAAACCCTAAATTGCCAAGTTTTGTGCTAAATAATAATCGGCAGAAAGTTGTGGATCAGAAGAAAGAAGAAACTAATCCTCCTGAGAAGCCTGACGTAGTCACTATTCCGGCATCGGGAGTGGTTTCCCCTCCGCCGGTGAAGGCTGAGTTCAAGTTCCCTGGGAAGTTCTCACATCCGGCTGTCCTGTGGCCGTTATCTGCTTTAGGAGGATTTCTCATCTTATGGTGGGCTTGGAAAAAATGGAGACCTGACGACGACGAAACGAAAAAAAAATGATATTTGATTTCTATATTGGAAGCAATCGATAATTATAAGCATTTGAAAATTTAATGCAGTTTGTTACTCTATATTATTTAGTTTATACTGATTCGTCATGTGATTGCCAATTTATTTATAAATTTGAGCCATGACAATAAGGCTTCCAGTGATATTCTTTAATTACTATAATTGTTGTAATTAATTATAGTATTTTGATACTTTTACGATCATATAAGTAATATGAGTTAAAGAGATAACTCCATCTCACTCGTTGTTTAATTCTTTTAATAAAATAAAGTCAAAATATCTTAAATAAAA

Coding sequence (CDS)

ATGGCTGAGAATAAAGAACATATTATCCAAAACCCTAAATTGCCAAGTTTTGTGCTAAATAATAATCGGCAGAAAGTTGTGGATCAGAAGAAAGAAGAAACTAATCCTCCTGAGAAGCCTGACGTAGTCACTATTCCGGCATCGGGAGTGGTTTCCCCTCCGCCGGTGAAGGCTGAGTTCAAGTTCCCTGGGAAGTTCTCACATCCGGCTGTCCTGTGGCCGTTATCTGCTTTAGGAGGATTTCTCATCTTATGGTGGGCTTGGAAAAAATGGAGACCTGACGACGACGAAACGAAAAAAAAATGA

Protein sequence

MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETKKK
Homology
BLAST of MELO3C012374.jh1 vs. NCBI nr
Match: XP_008446792.1 (PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo])

HSP 1 Score: 208 bits (529), Expect = 1.03e-67
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60
           MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF
Sbjct: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60

Query: 61  KFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETKK 100
           KFPGKFSHPAVLWPLSALGGFLI+WWAW+KWRPDDDETKK
Sbjct: 61  KFPGKFSHPAVLWPLSALGGFLIIWWAWQKWRPDDDETKK 100

BLAST of MELO3C012374.jh1 vs. NCBI nr
Match: KAA0034675.1 (uncharacterized protein E6C27_scaffold65G006940 [Cucumis melo var. makuwa] >TYK09226.1 uncharacterized protein E5676_scaffold475G002190 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (383), Expect = 8.27e-46
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60
          MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF
Sbjct: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60

Query: 61 KFPGKFSHPAVLWPL 75
          KFPGKFSHPAVLWP+
Sbjct: 61 KFPGKFSHPAVLWPV 75

BLAST of MELO3C012374.jh1 vs. NCBI nr
Match: XP_011655848.1 (uncharacterized protein LOC101213355 [Cucumis sativus] >KGN52215.1 hypothetical protein Csa_008804 [Cucumis sativus])

HSP 1 Score: 137 bits (345), Expect = 1.18e-39
Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 0

Query: 1   MAENKEHIIQNPKLPSFVLNNNRQKV--VDQKKEETNPPE-KPDVVTIPASGVVSPPPVK 60
           MAEN+E+I++NPKLPSFV NN RQK+  VDQKKEE N PE K +VVTIPA  VV PPP+K
Sbjct: 1   MAENEENIMRNPKLPSFVRNN-RQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIK 60

Query: 61  AEFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETKKK 101
           AE K  GKFSHPA++W L ALGGF I+ +AWKKW+P DDETKKK
Sbjct: 61  AEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK 103

BLAST of MELO3C012374.jh1 vs. NCBI nr
Match: XP_022957161.1 (uncharacterized protein LOC111458630 [Cucurbita moschata])

HSP 1 Score: 95.5 bits (236), Expect = 6.95e-23
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 0

Query: 1   MAENKEHIIQNPKLP-SFVLNNNRQKVVDQKKEETN-PPEKPDVVTIPASGVVSPPPVKA 60
           M +N++ +  NP+L  S+  + N  K+ D +++ +  PP KP++VT+P S V  PPP+ A
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTA 76

Query: 61  EFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETK 99
           E K PGKFSHPA+ WPL ALGGFLI  WA KKW+  +DE K
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 117

BLAST of MELO3C012374.jh1 vs. NCBI nr
Match: KAG7031999.1 (hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.7 bits (234), Expect = 8.95e-23
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 0

Query: 1   MAENKEHIIQNPKLP-SFVLNNNRQKVVDQKKEETN-PPEKPDVVTIPASGVVSPPPVKA 60
           M +N++ +  NP+L  S+  + N  K+ D +++ +  PP KP++VT+P S V  PPP+ A
Sbjct: 1   MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTA 60

Query: 61  EFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETK 99
           E K PGKFSHPA+ WPL ALGGFLI  WA KKW+  +DE K
Sbjct: 61  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 101

BLAST of MELO3C012374.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BGK5 (uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 4.98e-68
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60
           MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF
Sbjct: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60

Query: 61  KFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETKK 100
           KFPGKFSHPAVLWPLSALGGFLI+WWAW+KWRPDDDETKK
Sbjct: 61  KFPGKFSHPAVLWPLSALGGFLIIWWAWQKWRPDDDETKK 100

BLAST of MELO3C012374.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CFU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002190 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 4.00e-46
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60
          MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF
Sbjct: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60

Query: 61 KFPGKFSHPAVLWPL 75
          KFPGKFSHPAVLWP+
Sbjct: 61 KFPGKFSHPAVLWPV 75

BLAST of MELO3C012374.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KRF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 5.73e-40
Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 0

Query: 1   MAENKEHIIQNPKLPSFVLNNNRQKV--VDQKKEETNPPE-KPDVVTIPASGVVSPPPVK 60
           MAEN+E+I++NPKLPSFV NN RQK+  VDQKKEE N PE K +VVTIPA  VV PPP+K
Sbjct: 1   MAENEENIMRNPKLPSFVRNN-RQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIK 60

Query: 61  AEFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETKKK 101
           AE K  GKFSHPA++W L ALGGF I+ +AWKKW+P DDETKKK
Sbjct: 61  AEIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKPKDDETKKK 103

BLAST of MELO3C012374.jh1 vs. ExPASy TrEMBL
Match: A0A6J1GYG5 (uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC111458630 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.36e-23
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 0

Query: 1   MAENKEHIIQNPKLP-SFVLNNNRQKVVDQKKEETN-PPEKPDVVTIPASGVVSPPPVKA 60
           M +N++ +  NP+L  S+  + N  K+ D +++ +  PP KP++VT+P S V  PPP+ A
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTA 76

Query: 61  EFKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETK 99
           E K PGKFSHPA+ WPL ALGGFLI  WA KKW+  +DE K
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWKSGEDEGK 117

BLAST of MELO3C012374.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J8Z1 (uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.34e-22
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 0

Query: 1  MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETN-PPEKPDVVTIPASGVVSPPPVKAE 60
          M E ++ +  NPK+  F    NR K  D ++E +  PP+KP+VVT+P S V  PPP+ AE
Sbjct: 1  MVEYRDIVPTNPKVAWF-WPRNRDKSGDNEEEPSPMPPQKPNVVTLPGSEVAPPPPLAAE 60

Query: 61 FKFPGKFSHPAVLWPLSALGGFLILWWAWKKWRPDDDETK 99
           K PGKFSHPA+ W L ALGGF+I  WA K+W+  +DE K
Sbjct: 61 CKRPGKFSHPAIRWSLYALGGFIIARWALKRWKSGEDEGK 99

BLAST of MELO3C012374.jh1 vs. TAIR 10
Match: AT3G52230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.3e-07
Identity = 31/91 (34.07%), Postives = 48/91 (52.75%), Query Frame = 0

Query: 12  PKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEFK-FPGKFSHPA 71
           PK P   ++ N  K   +K+   +  E    VT P +   S  P+K E +   G+ S+  
Sbjct: 35  PKPPPATIDANAPKPTGEKEPLKSTYE---TVTFPYNPPKSAEPIKFEAEPSSGRTSNSV 94

Query: 72  VLWPLSALGGFLILWWAWKKWRPDDDETKKK 102
           +LW + ALGGFL+L WAW +W   ++ + KK
Sbjct: 95  ILWQVYALGGFLVLKWAWARWNERNERSDKK 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008446792.11.03e-6798.00PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo][more]
KAA0034675.18.27e-4698.67uncharacterized protein E6C27_scaffold65G006940 [Cucumis melo var. makuwa] >TYK0... [more]
XP_011655848.11.18e-3970.19uncharacterized protein LOC101213355 [Cucumis sativus] >KGN52215.1 hypothetical ... [more]
XP_022957161.16.95e-2349.50uncharacterized protein LOC111458630 [Cucurbita moschata][more]
KAG7031999.18.95e-2349.50hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BGK54.98e-6898.00uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=... [more]
A0A5D3CFU14.00e-4698.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KRF35.73e-4070.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1[more]
A0A6J1GYG53.36e-2349.50uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC1114586... [more]
A0A6J1J8Z13.34e-2250.00uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672... [more]
Match NameE-valueIdentityDescription
AT3G52230.13.3e-0734.07unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..48
NoneNo IPR availablePANTHERPTHR36374OS01G0969000 PROTEINcoord: 12..101
NoneNo IPR availablePANTHERPTHR36374:SF1OS01G0969000 PROTEINcoord: 12..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012374.jh1.t1MELO3C012374.jh1.t1mRNA