Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. GAGTTGTAATTTGTATAATGTACTTTGTGCGTGCAATTATAATATAATGAAATTGGAATCGGAACTAAAGAGATGAATGATGATGATGATGATGATGATGATTCATTGATTTGCTATTGTACGCACCTCACGGCGAGTTCATCGAATCGTTTGTTAGGTTGCCGTTGTCGGAGAACATGGAGGTCGCCGCCGGGACAAAACTCCGTCAAGAGACAGAGCCACTTCGGTGAGTCGATACTAGCATAAAGCGTCGGTAGAAATGGATGGTCCAAAGACTCCAAA mRNA sequence GAGTTGTAATTTGTATAATGTACTTTGTGCGTGCAATTATAATATAATGAAATTGGAATCGGAACTAAAGAGATGAATGATGATGATGATGATGATGATGATTCATTGATTTGCTATTGTACGCACCTCACGGCGAGTTCATCGAATCGTTTGTTAGGTTGCCGTTGTCGGAGAACATGGAGGTCGCCGCCGGGACAAAACTCCGTCAAGAGACAGAGCCACTTCGGTGAGTCGATACTAGCATAAAGCGTCGGTAGAAATGGATGGTCCAAAGACTCCAAA Coding sequence (CDS) ATGAATGATGATGATGATGATGATGATGATTCATTGATTTGCTATTGTACGCACCTCACGGCGAGTTCATCGAATCGTTTGTTAGGTTGCCGTTGTCGGAGAACATGGAGGTCGCCGCCGGGACAAAACTCCGTCAAGAGACAGAGCCACTTCGGTGAGTCGATACTAGCATAA Protein sequence MNDDDDDDDDSLICYCTHLTASSSNRLLGCRCRRTWRSPPGQNSVKRQSHFGESILA
Homology
BLAST of MELO.jh034033.1.t1 vs. NCBI nr
Match: ACR36865.1 (unknown [Zea mays]) HSP 1 Score: 50.1 bits (118), Expect = 4.14e-05 Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0
Query: 18 HLTASSSNRLLGCRCRRTWRSPPGQNSVKRQSHFGESILA 57
+L A S L GCRCR TWRSPPGQNS+ RQ++ S A
Sbjct: 38 YLAACSGKCLPGCRCRSTWRSPPGQNSMTRQANRSVSKCA 77
BLAST of MELO.jh034033.1.t1 vs. ExPASy TrEMBL
Match: C4J6R5 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 2.01e-05 Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0
Query: 18 HLTASSSNRLLGCRCRRTWRSPPGQNSVKRQSHFGESILA 57
+L A S L GCRCR TWRSPPGQNS+ RQ++ S A
Sbjct: 38 YLAACSGKCLPGCRCRSTWRSPPGQNSMTRQANRSVSKCA 77
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| ACR36865.1 | 4.14e-05 | 57.50 | unknown [Zea mays] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| C4J6R5 | 2.01e-05 | 57.50 | Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 37..57 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO.jh034033.1.t1.exon | MELO.jh034033.1.t1.exon | exon |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO.jh034033.1.t1.stop_codon | MELO.jh034033.1.t1.stop_codon | stop_codon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO.jh034033.1.t1.cds | MELO.jh034033.1.t1.cds | CDS |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO.jh034033.1.t1.start_codon | MELO.jh034033.1.t1.start_codon | start_codon |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO.jh034033.1.t1 | MELO.jh034033.1.t1-protein | polypeptide |
|
