Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGGTATGCTGGTAGAGATCTGGATAAATGATAAAGTTAAAAGTAAGTTGTGACTATAGATTTAAGTTGTCATATTCAAAATCATGTCGATCAAACATAGTAAATCAGTTAATGTTTGATTTAACACCTTTAAACACAATTTTAATAACTATGAAATTTTATTTTAAAAGATTAAAAGCATGTTTAGTAGTGGTTTTGAATATGACAATAGCTATCTTTTTTTATATCTCTCTGTTTTTCTTTTTAAAGTACGTCTATGAGAGATAAAGACAGTGTGATTGAATCACTGATTATTAATTTTCTTTTTTGATGTGTTCTTACAGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGAAGTATGAAGTTGTATTAATCAAGCAGAACAAGATCATCAAGTTGCTGGGTTTTGTTTTATCGTTAATCCTAGTTTTTTTGCACGCATAATTGTTTTTTCCCCCTGAAGTTATAACCTCCAATTGAGCTGTTGGTTGTTTCTCTAATTATAGATCAAGCACAACTAACATTGAATGCAATCATTTTTGGTATAAACCTTGCACAGATTGCTGCTTTGCTCTTCTAAAGCTGGGTTGTAATACTCTACTGAAACCAAACTTCCATTTGTAATACCCTGAACCTTGCACATGTGCTGGTTAATAATCGATTGTGGTACATCCTCTGATTTGTAATACCCTACTGAATTTAATACAGACGTTACTTTTTTGTTTGACAAGG
mRNA sequence
ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGAAGTATGAAGTTGTATTAATCAAGCAGAACAAGATCATCAAGTTGCTGGGTTTTGTTTTATCGTTAATCCTAGTTTTTTTGCACGCATAATTGTTTTTTCCCCCTGAAGTTATAACCTCCAATTGAGCTGTTGGTTGTTTCTCTAATTATAGATCAAGCACAACTAACATTGAATGCAATCATTTTTGGTATAAACCTTGCACAGATTGCTGCTTTGCTCTTCTAAAGCTGGGTTGTAATACTCTACTGAAACCAAACTTCCATTTGTAATACCCTGAACCTTGCACATGTGCTGGTTAATAATCGATTGTGGTACATCCTCTGATTTGTAATACCCTACTGAATTTAATACAGACGTTACTTTTTTGTTTGACAAGG
Coding sequence (CDS)
ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG
Protein sequence
MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYGACIAGGIGAEDGGVIWEFDK
Homology
BLAST of Lsi05G021360.1 vs. ExPASy TrEMBL
Match:
A0A0A0L8I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 73/93 (78.49%), Postives = 77/93 (82.80%), Query Frame = 0
Query: 2 GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
G EQKDP KGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 11 GVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 70
Query: 62 ACIAGGIGA-------------EDGGVIWEFDK 82
ACIAGGIGA +DGGVIWEFDK
Sbjct: 71 ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
BLAST of Lsi05G021360.1 vs. ExPASy TrEMBL
Match:
A0A5D3DB39 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00890 PE=4 SV=1)
HSP 1 Score: 146.7 bits (369), Expect = 4.1e-32
Identity = 72/93 (77.42%), Postives = 76/93 (81.72%), Query Frame = 0
Query: 2 GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
G EQKDPFKGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRR LP +AFYG
Sbjct: 11 GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70
Query: 62 ACIAGGIGA-------------EDGGVIWEFDK 82
ACIAGGIGA +DGGVIWEFDK
Sbjct: 71 ACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103
BLAST of Lsi05G021360.1 vs. ExPASy TrEMBL
Match:
A0A1S3AV52 (uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=4 SV=1)
HSP 1 Score: 146.7 bits (369), Expect = 4.1e-32
Identity = 72/93 (77.42%), Postives = 76/93 (81.72%), Query Frame = 0
Query: 2 GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
G EQKDPFKGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRR LP +AFYG
Sbjct: 11 GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70
Query: 62 ACIAGGIGA-------------EDGGVIWEFDK 82
ACIAGGIGA +DGGVIWEFDK
Sbjct: 71 ACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103
BLAST of Lsi05G021360.1 vs. ExPASy TrEMBL
Match:
A0A6J1FVE8 (uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC111447184 PE=4 SV=1)
HSP 1 Score: 146.4 bits (368), Expect = 5.3e-32
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0
Query: 1 MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1 MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60
Query: 61 GACIAGGIGA-------------EDGGVIWEFDK 82
GACIAGGIGA +DGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
BLAST of Lsi05G021360.1 vs. ExPASy TrEMBL
Match:
A0A6J1IJJ2 (uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080 PE=4 SV=1)
HSP 1 Score: 143.3 bits (360), Expect = 4.5e-31
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 0
Query: 1 MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSL S +AFY
Sbjct: 1 MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFY 60
Query: 61 GACIAGGIGA-------------EDGGVIWEFDK 82
GACIAGGIGA +DGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
BLAST of Lsi05G021360.1 vs. NCBI nr
Match:
XP_004133805.1 (uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical protein Csa_009724 [Cucumis sativus])
HSP 1 Score: 148.7 bits (374), Expect = 2.2e-32
Identity = 73/93 (78.49%), Postives = 77/93 (82.80%), Query Frame = 0
Query: 2 GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
G EQKDP KGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 11 GVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 70
Query: 62 ACIAGGIGA-------------EDGGVIWEFDK 82
ACIAGGIGA +DGGVIWEFDK
Sbjct: 71 ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
BLAST of Lsi05G021360.1 vs. NCBI nr
Match:
XP_008437869.1 (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 uncharacterized protein E6C27_scaffold171G00910 [Cucumis melo var. makuwa] >TYK20827.1 uncharacterized protein E5676_scaffold291G00890 [Cucumis melo var. makuwa])
HSP 1 Score: 146.7 bits (369), Expect = 8.4e-32
Identity = 72/93 (77.42%), Postives = 76/93 (81.72%), Query Frame = 0
Query: 2 GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
G EQKDPFKGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRR LP +AFYG
Sbjct: 11 GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70
Query: 62 ACIAGGIGA-------------EDGGVIWEFDK 82
ACIAGGIGA +DGGVIWEFDK
Sbjct: 71 ACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103
BLAST of Lsi05G021360.1 vs. NCBI nr
Match:
XP_022942020.1 (uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothetical protein SDJN03_10245, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028536.1 hypothetical protein SDJN02_09717 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0
Query: 1 MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1 MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60
Query: 61 GACIAGGIGA-------------EDGGVIWEFDK 82
GACIAGGIGA +DGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
BLAST of Lsi05G021360.1 vs. NCBI nr
Match:
XP_023522177.1 (uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0
Query: 1 MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1 MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60
Query: 61 GACIAGGIGA-------------EDGGVIWEFDK 82
GACIAGGIGA +DGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 94
BLAST of Lsi05G021360.1 vs. NCBI nr
Match:
XP_022975548.1 (uncharacterized protein LOC111475080 [Cucurbita maxima])
HSP 1 Score: 143.3 bits (360), Expect = 9.3e-31
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 0
Query: 1 MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSL S +AFY
Sbjct: 1 MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFY 60
Query: 61 GACIAGGIGA-------------EDGGVIWEFDK 82
GACIAGGIGA +DGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94
BLAST of Lsi05G021360.1 vs. TAIR 10
Match:
AT5G16950.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 0
Query: 3 EEQKDPFKGVDWKAVGGDMQKNPSATNI-----IKKRRPTKIRQIPDYYFLPRRSLPSAI 62
E KDP+KG +W + K P+ + + +K+ P + + YFLPR+ P A+
Sbjct: 4 EGAKDPWKGEEW-GTENEKTKKPTTSGVKTVTRARKQIPRGLEDKYEAYFLPRKPWPRAL 63
Query: 63 AFYGACIAGGIGA-------------EDGGVIWEFDK 82
A+YG+ I GGIGA EDGGVIWEFDK
Sbjct: 64 AYYGSFILGGIGAGMVIEAWINKKVKEDGGVIWEFDK 99
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L8I7 | 1.1e-32 | 78.49 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1 | [more] |
A0A5D3DB39 | 4.1e-32 | 77.42 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3AV52 | 4.1e-32 | 77.42 | uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=... | [more] |
A0A6J1FVE8 | 5.3e-32 | 73.40 | uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC1114471... | [more] |
A0A6J1IJJ2 | 4.5e-31 | 72.34 | uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080... | [more] |
Match Name | E-value | Identity | Description | |
XP_004133805.1 | 2.2e-32 | 78.49 | uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical ... | [more] |
XP_008437869.1 | 8.4e-32 | 77.42 | PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 unc... | [more] |
XP_022942020.1 | 1.1e-31 | 73.40 | uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothet... | [more] |
XP_023522177.1 | 1.1e-31 | 73.40 | uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo] | [more] |
XP_022975548.1 | 9.3e-31 | 72.34 | uncharacterized protein LOC111475080 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
AT5G16950.1 | 1.0e-11 | 39.18 | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... | [more] |