Lsi05G021360 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G021360
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Krueppel-like factor
Location	chr05: 28185353 .. 28186306 (-)
RNA-Seq Expression	Lsi05G021360
Synteny	Lsi05G021360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGGTATGCTGGTAGAGATCTGGATAAATGATAAAGTTAAAAGTAAGTTGTGACTATAGATTTAAGTTGTCATATTCAAAATCATGTCGATCAAACATAGTAAATCAGTTAATGTTTGATTTAACACCTTTAAACACAATTTTAATAACTATGAAATTTTATTTTAAAAGATTAAAAGCATGTTTAGTAGTGGTTTTGAATATGACAATAGCTATCTTTTTTTATATCTCTCTGTTTTTCTTTTTAAAGTACGTCTATGAGAGATAAAGACAGTGTGATTGAATCACTGATTATTAATTTTCTTTTTTGATGTGTTCTTACAGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGAAGTATGAAGTTGTATTAATCAAGCAGAACAAGATCATCAAGTTGCTGGGTTTTGTTTTATCGTTAATCCTAGTTTTTTTGCACGCATAATTGTTTTTTCCCCCTGAAGTTATAACCTCCAATTGAGCTGTTGGTTGTTTCTCTAATTATAGATCAAGCACAACTAACATTGAATGCAATCATTTTTGGTATAAACCTTGCACAGATTGCTGCTTTGCTCTTCTAAAGCTGGGTTGTAATACTCTACTGAAACCAAACTTCCATTTGTAATACCCTGAACCTTGCACATGTGCTGGTTAATAATCGATTGTGGTACATCCTCTGATTTGTAATACCCTACTGAATTTAATACAGACGTTACTTTTTTGTTTGACAAGG

mRNA sequence

ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGAAGTATGAAGTTGTATTAATCAAGCAGAACAAGATCATCAAGTTGCTGGGTTTTGTTTTATCGTTAATCCTAGTTTTTTTGCACGCATAATTGTTTTTTCCCCCTGAAGTTATAACCTCCAATTGAGCTGTTGGTTGTTTCTCTAATTATAGATCAAGCACAACTAACATTGAATGCAATCATTTTTGGTATAAACCTTGCACAGATTGCTGCTTTGCTCTTCTAAAGCTGGGTTGTAATACTCTACTGAAACCAAACTTCCATTTGTAATACCCTGAACCTTGCACATGTGCTGGTTAATAATCGATTGTGGTACATCCTCTGATTTGTAATACCCTACTGAATTTAATACAGACGTTACTTTTTTGTTTGACAAGG

Coding sequence (CDS)

ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

Protein sequence

MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYGACIAGGIGAEDGGVIWEFDK

Homology

[Close]

BLAST of Lsi05G021360 vs. ExPASy TrEMBL
Match: A0A0A0L8I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 73/93 (78.49%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDP KGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 11  GVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 70

Query: 62  ACIAGGIGA-------------EDGGVIWEFDK 82
           ACIAGGIGA             +DGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Lsi05G021360 vs. ExPASy TrEMBL
Match: A0A5D3DB39 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00890 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.1e-32
Identity = 72/93 (77.42%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDPFKGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRR LP  +AFYG
Sbjct: 11  GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70

Query: 62  ACIAGGIGA-------------EDGGVIWEFDK 82
           ACIAGGIGA             +DGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Lsi05G021360 vs. ExPASy TrEMBL
Match: A0A1S3AV52 (uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.1e-32
Identity = 72/93 (77.42%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDPFKGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRR LP  +AFYG
Sbjct: 11  GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70

Query: 62  ACIAGGIGA-------------EDGGVIWEFDK 82
           ACIAGGIGA             +DGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Lsi05G021360 vs. ExPASy TrEMBL
Match: A0A6J1FVE8 (uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC111447184 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.3e-32
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1  MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GACIAGGIGA-------------EDGGVIWEFDK 82
          GACIAGGIGA             +DGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of Lsi05G021360 vs. ExPASy TrEMBL
Match: A0A6J1IJJ2 (uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.5e-31
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 1  MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSL S +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFY 60

Query: 61 GACIAGGIGA-------------EDGGVIWEFDK 82
          GACIAGGIGA             +DGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of Lsi05G021360 vs. NCBI nr
Match: XP_004133805.1 (uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical protein Csa_009724 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 2.2e-32
Identity = 73/93 (78.49%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDP KGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 11  GVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 70

Query: 62  ACIAGGIGA-------------EDGGVIWEFDK 82
           ACIAGGIGA             +DGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Lsi05G021360 vs. NCBI nr
Match: XP_008437869.1 (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 uncharacterized protein E6C27_scaffold171G00910 [Cucumis melo var. makuwa] >TYK20827.1 uncharacterized protein E5676_scaffold291G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 8.4e-32
Identity = 72/93 (77.42%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDPFKGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRR LP  +AFYG
Sbjct: 11  GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70

Query: 62  ACIAGGIGA-------------EDGGVIWEFDK 82
           ACIAGGIGA             +DGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Lsi05G021360 vs. NCBI nr
Match: XP_022942020.1 (uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothetical protein SDJN03_10245, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028536.1 hypothetical protein SDJN02_09717 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1  MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GACIAGGIGA-------------EDGGVIWEFDK 82
          GACIAGGIGA             +DGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of Lsi05G021360 vs. NCBI nr
Match: XP_023522177.1 (uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1  MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GACIAGGIGA-------------EDGGVIWEFDK 82
          GACIAGGIGA             +DGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 94

[Close]

BLAST of Lsi05G021360 vs. NCBI nr
Match: XP_022975548.1 (uncharacterized protein LOC111475080 [Cucurbita maxima])

HSP 1 Score: 143.3 bits (360), Expect = 9.3e-31
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 1  MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSL S +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFY 60

Query: 61 GACIAGGIGA-------------EDGGVIWEFDK 82
          GACIAGGIGA             +DGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of Lsi05G021360 vs. TAIR 10
Match: AT5G16950.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 3  EEQKDPFKGVDWKAVGGDMQKNPSATNI-----IKKRRPTKIRQIPDYYFLPRRSLPSAI 62
          E  KDP+KG +W     +  K P+ + +      +K+ P  +    + YFLPR+  P A+
Sbjct: 4  EGAKDPWKGEEW-GTENEKTKKPTTSGVKTVTRARKQIPRGLEDKYEAYFLPRKPWPRAL 63

Query: 63 AFYGACIAGGIGA-------------EDGGVIWEFDK 82
          A+YG+ I GGIGA             EDGGVIWEFDK
Sbjct: 64 AYYGSFILGGIGAGMVIEAWINKKVKEDGGVIWEFDK 99

The following BLAST results are available for this feature:

BLAST of Lsi05G021360 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G021360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8I7	1.1e-32	78.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1	[more]
A0A5D3DB39	4.1e-32	77.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AV52	4.1e-32	77.42	uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=...	[more]
A0A6J1FVE8	5.3e-32	73.40	uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A6J1IJJ2	4.5e-31	72.34	uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080...	[more]

BLAST of Lsi05G021360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133805.1	2.2e-32	78.49	uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical ...	[more]
XP_008437869.1	8.4e-32	77.42	PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 unc...	[more]
XP_022942020.1	1.1e-31	73.40	uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothet...	[more]
XP_023522177.1	1.1e-31	73.40	uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo]	[more]
XP_022975548.1	9.3e-31	72.34	uncharacterized protein LOC111475080 [Cucurbita maxima]	[more]

BLAST of Lsi05G021360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16950.1	1.0e-11	39.18	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR36797:SF4	SUBFAMILY NOT NAMED	coord: 3..77
None	No IPR available	PANTHER	PTHR36797	OS01G0258600 PROTEIN	coord: 3..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G021360.1	Lsi05G021360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane