Lsi03G020090.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G020090.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	(thale cress) hypothetical protein
Location	chr03: 31517016 .. 31519847 (-)
Sequence length	1892
RNA-Seq Expression	Lsi03G020090.1
Synteny	Lsi03G020090.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCATTCCATTGCTGTAGATAAGCAGATAGAACGACAAACCAGAAAGAAGCAGTGCTTTCTGAGAAGCCAAAGCGAGAGGGACGAAGAAATGGAGAAGTACTTCGGAAATGCTTACAGAGGCGACCCTGGAGTTCCACACGCCGACCCAGATCGTTTCGTCAACATTTGGATTGGATCCGCCGCCTTCTCCGTTCTCACATGGTTCAATCCTTACATGTGGCAACTCTCCAATCAGTTCAAGTACTCGTTTCTTTCTTTCTCAGGGAAATGTTTGAATTCGTGTTCTGCTCTGCAATTCGCCTTCCTGCTTCATTACTCTGTTGTTATAGTACTGATGTTCAATTTCTGTAGCAATAGCTTCACATTCTTTTTGGTGGGTCGGTTTTGAAATCAATTTTTACTGGAGTTCGACTTTGATAAGGAAATGTTTTAGGGTTTTACGAACCCAGTTGACCTTATCGCTCTAGAAGTTTGAGTGACTGTAGATGATTCAGTTTCATTGCCTGTATAGTGATAATCTCATCGCTTATTATTCAAGTAGCTGTGAAATTCGAAATTTATATTGTATAGTGATAATCTTTTACTTATTATTCCTTGCCTGTATAGGAAAGAACATCTTCTGTTCTGAAGAGTTGCTTCTGTTATTGGAATTTATTTTCTTTTTACATTAGAATTTATGCGATCCTCCAGAAAACAATTTTCGCCAACGCTTCTACCTGTACTGAAAAGAGACAAGAATATAAATTGTTTTTCCTTCTGGCAAGTATATGAACTATCATAATTATATATGATTTTCTTCTTATGTTGTTCAATTCTAATCATGTTTTTCGGATTCTGCTTCTTTTAGTCTTGAGAAACACTCTCGTAAATGAATCTGATATAGTGGATTTTTAGGACATGTTGATGCCTTATGTTATCACTTGGTTCATTAATGTTGTCTTATTACTTAGAAGTGAACTAGAAGCACTAGTCTAAATTTGATGAAATGTACATGCGGGTTTTCTGATAAAGGTGTGATATTGGCATCGTTTTTTGTTGTTTTTTTGTACACTTATTCTTTCCATTATTCCCATTAGAGATCGTGGGCATGGGCTGTGATTCTTTATCTTGTTTTTGCTGTTACTGTTTTGCAATTGTAATCTTTATTCTCAGTTCATATTTGAACTATGAATTCTCAATTTGTAATTTGTAGTTGGCATGACAAAGCGTTTTTGTTTGAGCAATACCACTGGAAAAAGGCACGTCAAAAGAATCAGCCATACCAATTCAAGGTACAATGTTCTACTCCAGTTTATATGGAAGCAAACAAACATTTATTATTGCATTTGAACAACGTTATACTTTTAATATCTCATGGAATGGCTATGTTGTTCTTATAAAAACTTCATTGCTGCAGTGGAATCAGTACATGGACAAGTACCACCGGGATTCCTATTATTATAACTGGCCTGTGTACTTTCCTTAGGCTCTCTGATTATGTAAGAAAACCGTTGCTTGACTGCTTAGTTATTTGGCTTGTTTCGGTGGCAAACAGAGATTACTATTACACTAAGGCTCGAAGGTCTATGGATGTGTAGAATCATATTTCTTTTGACCAGTTTGGATAACGGTTTTGTCGTGTGGTCGCCCTATACTGTAGTAATGATATTGAGAATGGATGAATTGTACCAGGTACCATTTGCAATTATATGATAAAGATCTGAAAGGGCATTTTATATCATACTGATATGGAACATAGAAACTGAAACAAGTGCTAAAACTGGGTGGTCAGATGCTCAAATGAGATTTTAACTTCCTCTCTCATAATCAATAGATAATATAACATACCCTTTGGCTTTGATCTATGAACATTTTCATAATTTTTTTCTTTTAACAATACATGGGGTGGGGGAATTAAACCTCTAACCTTGAGGTTGAAAGCACATGCCTTATGCCCGTTGAGCTATGTTCTTTTTGGCACATTTTCATCATTTTGCTGGGGTATTGTATAGAGCTTAGATCTTGATTTCTTCTTGCTTATCTTTTACGATATACCTCTTTACATATAATTCCTGGATCGTTCGAAAATTCTTAGATCTGATAGAAACGATCAAATTATTATCATTCTCAGTCTCTTACAGGTGGGGTGTTCTGATTCTAAGATGAAGCAGAAACCCAATTTTCTCATTTATGGATATGGGTTTCTTAGCACAGCTTCACCATTGCTGTACTGTATTAGTCAAGGCCCAAAGTGGAATACTATGGGCCTTAAAGCTCTATCTGTTGCCATGTTTTGAAGAACTGTAACCCCATTTTGAAAAGCACCCACAATTCAGCTTTACAATCACTATGCATAAAGGAAAAAGGGTCATAATGTCCAAAGTAAAGCATCTTCATTCCCACCCAAGGAAAAGCTGTTGAATCAAAAGATGAGAAAGAAGAAAAAAAGAAAAAGAAAAAAGTAAGAAAACAGTGCAGAGGAGGATTTCAACCAAGTTTTAGAGAAGACCCTTTTCTTTTCTTCCTTCCATTAGCTTATCTAATTGTGAAAGTCAAGAATCAAAATGATTATGGTTATCAACTTCATTCTTCATCATGATGATTTTCTCTTAAGACATTGTTCATTCTTCTATACATTAAAATGGGTGAATTTCCCTTTATGCCATCGTACATGCAAAATAACCTTCTAAATGGTAGTGAAACATAGCTTTCAAGGTCAAATATGATTGATCTTTTATGATTTAGGCTTGGGTTTATTCTAGTCTATACGGTTTTAAAAGTTTTGATATGTTCTTGTAATTTGGTTAACTGTTATAATCCATCCCAAACCATCTCTTTTTCCATTTGT

mRNA sequence

ATGGCGCATTCCATTGCTGTAGATAAGCAGATAGAACGACAAACCAGAAAGAAGCAGTGCTTTCTGAGAAGCCAAAGCGAGAGGGACGAAGAAATGGAGAAGTACTTCGGAAATGCTTACAGAGGCGACCCTGGAGTTCCACACGCCGACCCAGATCGTTTCGTCAACATTTGGATTGGATCCGCCGCCTTCTCCGTTCTCACATGGTTCAATCCTTACATGTGGCAACTCTCCAATCAGTTCAAGTACTCGTTTCTTTCTTTCTCAGGGAAATGTTTGAATTCGTGTTCTGCTCTGCAATTCGCCTTCCTGCTTCATTACTCTGTTGTTATAGTACTGATGTTCAATTTCTGTAGCAATAGCTTCACATTCTTTTTGGTGGTTGGCATGACAAAGCGTTTTTGTTTGAGCAATACCACTGGAAAAAGGCACGTCAAAAGAATCAGCCATACCAATTCAAGTGGAATCAGTACATGGACAAGTACCACCGGGATTCCTATTATTATAACTGGCCTGTGTACTTTCCTTAGGCTCTCTGATTATGTAAGAAAACCGTTGCTTGACTGCTTAGTTATTTGGCTTGTTTCGGTGGCAAACAGAGATTACTATTACACTAAGGCTCGAAGGTCTATGGATGTGTAGAATCATATTTCTTTTGACCAGTTTGGATAACGGTTTTGTCGTGTGGTCGCCCTATACTGTAGTAATGATATTGAGAATGGATGAATTGTACCAGGTACCATTTGCAATTATATGATAAAGATCTGAAAGGGCATTTTATATCATACTGATATGGAACATAGAAACTGAAACAAGTGCTAAAACTGGGTGGTCAGATGCTCAAATGAGATTTTAACTTCCTCTCTCATAATCAATAGATAATATAACATACCCTTTGGCTTTGATCTATGAACATTTTCATAATTTTTTTCTTTTAACAATACATGGGGTGGGGGAATTAAACCTCTAACCTTGAGGTTGAAAGCACATGCCTTATGCCCGTTGAGCTATGTTCTTTTTGGCACATTTTCATCATTTTGCTGGGGTATTGTATAGAGCTTAGATCTTGATTTCTTCTTGCTTATCTTTTACGATATACCTCTTTACATATAATTCCTGGATCGTTCGAAAATTCTTAGATCTGATAGAAACGATCAAATTATTATCATTCTCAGTCTCTTACAGGTGGGGTGTTCTGATTCTAAGATGAAGCAGAAACCCAATTTTCTCATTTATGGATATGGGTTTCTTAGCACAGCTTCACCATTGCTGTACTGTATTAGTCAAGGCCCAAAGTGGAATACTATGGGCCTTAAAGCTCTATCTGTTGCCATGTTTTGAAGAACTGTAACCCCATTTTGAAAAGCACCCACAATTCAGCTTTACAATCACTATGCATAAAGGAAAAAGGGTCATAATGTCCAAAGTAAAGCATCTTCATTCCCACCCAAGGAAAAGCTGTTGAATCAAAAGATGAGAAAGAAGAAAAAAAGAAAAAGAAAAAAGTAAGAAAACAGTGCAGAGGAGGATTTCAACCAAGTTTTAGAGAAGACCCTTTTCTTTTCTTCCTTCCATTAGCTTATCTAATTGTGAAAGTCAAGAATCAAAATGATTATGGTTATCAACTTCATTCTTCATCATGATGATTTTCTCTTAAGACATTGTTCATTCTTCTATACATTAAAATGGGTGAATTTCCCTTTATGCCATCGTACATGCAAAATAACCTTCTAAATGGTAGTGAAACATAGCTTTCAAGGTCAAATATGATTGATCTTTTATGATTTAGGCTTGGGTTTATTCTAGTCTATACGGTTTTAAAAGTTTTGATATGTTCTTGTAATTTGGTTAACTGTTATAATCCATCCCAAACCATCTCTTTTTCCATTTGT

Coding sequence (CDS)

ATGGCGCATTCCATTGCTGTAGATAAGCAGATAGAACGACAAACCAGAAAGAAGCAGTGCTTTCTGAGAAGCCAAAGCGAGAGGGACGAAGAAATGGAGAAGTACTTCGGAAATGCTTACAGAGGCGACCCTGGAGTTCCACACGCCGACCCAGATCGTTTCGTCAACATTTGGATTGGATCCGCCGCCTTCTCCGTTCTCACATGGTTCAATCCTTACATGTGGCAACTCTCCAATCAGTTCAAGTACTCGTTTCTTTCTTTCTCAGGGAAATGTTTGAATTCGTGTTCTGCTCTGCAATTCGCCTTCCTGCTTCATTACTCTGTTGTTATAGTACTGATGTTCAATTTCTGTAGCAATAGCTTCACATTCTTTTTGGTGGTTGGCATGACAAAGCGTTTTTGTTTGAGCAATACCACTGGAAAAAGGCACGTCAAAAGAATCAGCCATACCAATTCAAGTGGAATCAGTACATGGACAAGTACCACCGGGATTCCTATTATTATAACTGGCCTGTGTACTTTCCTTAGGCTCTCTGATTATGTAAGAAAACCGTTGCTTGACTGCTTAGTTATTTGGCTTGTTTCGGTGGCAAACAGAGATTACTATTACACTAAGGCTCGAAGGTCTATGGATGTGTAG

Protein sequence

MAHSIAVDKQIERQTRKKQCFLRSQSERDEEMEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGKCLNSCSALQFAFLLHYSVVIVLMFNFCSNSFTFFLVVGMTKRFCLSNTTGKRHVKRISHTNSSGISTWTSTTGIPIIITGLCTFLRLSDYVRKPLLDCLVIWLVSVANRDYYYTKARRSMDV

Homology

[Close]

BLAST of Lsi03G020090.1 vs. ExPASy TrEMBL
Match: A0A5D3DNH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002690 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.2e-28
Identity = 67/94 (71.28%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 32  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKY----SFLS 91
           MEKYFGNAYRGDPGVPH DP RF NIWIG+A FSVLTWFNPYMWQLSNQFKY     FLS
Sbjct: 1   MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFKYFFLFFFLS 60

Query: 92  FSGKC----------LNSCSALQFAFLLHYSVVI 112
           F  KC          LN+CS+LQF+FLLHY VV+
Sbjct: 61  FLVKCLDSLNYSTVSLNACSSLQFSFLLHYFVVM 94

[Close]

BLAST of Lsi03G020090.1 vs. ExPASy TrEMBL
Match: A0A7G2EL77 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS10561 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.9e-26
Identity = 79/143 (55.24%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 32  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGK 91
           MEKYFGNAYRGDPGVPHAD DRFVNIWIGSAAFSVLTW NPYMWQLSNQFKY  LS S +
Sbjct: 1   MEKYFGNAYRGDPGVPHADADRFVNIWIGSAAFSVLTWVNPYMWQLSNQFKYFSLSLSLE 60

Query: 92  CLNSCSALQFAFLLHYSVVIVLMFNFCSNSFTFFLVVGMTKRFCLSNTTGKRHVKRISHT 151
             NS        L   + V+++     S        V MT   CLS+TTGK+  +R +  
Sbjct: 61  LSNS-------NLGELNEVVIIGIAKTS--------VTMTSGCCLSSTTGKKQGQRSNLM 120

Query: 152 NSSGISTWTSTTGIPIIITGLCT 175
           NSSGI  +   +G   I TG  T
Sbjct: 121 NSSGI-RYPKKSGTRTITTGQST 127

[Close]

BLAST of Lsi03G020090.1 vs. ExPASy TrEMBL
Match: A0A7J9LHD3 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_016979 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.7e-24
Identity = 76/152 (50.00%), Postives = 90/152 (59.21%), Query Frame = 0


Query: 32  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGK 91
           MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++  
Sbjct: 1   MEKYFGNAYRGDPGVPHAGPDRFVNIWIGSAAFSVLTWFNPYMWQLTNQFKWQILHYANL 60

Query: 92  CL---------NSCSALQFAFLLHYSVVIVLMFNFCSNSFTFFLVVGMTKRFCLSNTTGK 151
                       +CS + F +LL +S+ I    ++   +  F        +        K
Sbjct: 61  AFIYTFLFVLDIACSRVSF-YLLIWSMSIC---SWHDKAMIFEHYHWKKAKAKNQPYKFK 120

Query: 152 RHVKRISHTNSSGISTWTSTTGIPIIITGLCT 175
           R  K  S    SG+STWT  TG  II TGL T
Sbjct: 121 RSHKPFSFVLFSGMSTWTRITGTRIISTGLST 148

[Close]

BLAST of Lsi03G020090.1 vs. ExPASy TrEMBL
Match: A0A7J8PFY2 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_001142 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-24
Identity = 75/152 (49.34%), Postives = 88/152 (57.89%), Query Frame = 0


Query: 32  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGK 91
           MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++  
Sbjct: 1   MEKYFGNAYRGDPGVPHAGPDRFVNIWIGSAAFSVLTWFNPYMWQLTNQFKWQILQYT-- 60

Query: 92  CLNSCSALQFAFLLHYS------VVIVLMFNFCS---NSFTFFLVVGMTKRFCLSNTTGK 151
             N      F F+L  +       +++   + CS    +  F        +        K
Sbjct: 61  --NLAFIYTFLFILDIACSRVSFYLLIWSMSICSWHDKAMIFEHYHWKKAKAKNQPYKFK 120

Query: 152 RHVKRISHTNSSGISTWTSTTGIPIIITGLCT 175
           R  K  S    SG+STWT  TG  II TGL T
Sbjct: 121 RSHKPFSFVLFSGMSTWTRITGTRIISTGLST 148

[Close]

BLAST of Lsi03G020090.1 vs. ExPASy TrEMBL
Match: A0A7J9J7C6 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_014844 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-24
Identity = 75/154 (48.70%), Postives = 90/154 (58.44%), Query Frame = 0


Query: 32  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGK 91
           MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++  
Sbjct: 1   MEKYFGNAYRGDPGVPHAGPDRFVNIWIGSAAFSVLTWFNPYMWQLTNQFKWQILHYTNL 60

Query: 92  CL---------NSCSALQFAFLLHYSVVIVLMFN--FCSNSFTFFLVVGMTKRFCLSNTT 151
                       +CS + F +LL +S+ I    +       + +       + +      
Sbjct: 61  AFIYTFLFILDIACSRVSF-YLLIWSMSICSWHDKAMIFEHYHWKKAKAKNQPYKFKVLD 120

Query: 152 GKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT 175
            KR  K  S    SG+STWT  TG  II TGL T
Sbjct: 121 IKRSHKPFSFVLFSGMSTWTRITGTRIISTGLST 153

[Close]

BLAST of Lsi03G020090.1 vs. NCBI nr
Match: KAA0043996.1 (hypothetical protein E6C27_scaffold236G003420 [Cucumis melo var. makuwa] >TYK25144.1 hypothetical protein E5676_scaffold352G002690 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 8.7e-28
Identity = 67/94 (71.28%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 32  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKY----SFLS 91
           MEKYFGNAYRGDPGVPH DP RF NIWIG+A FSVLTWFNPYMWQLSNQFKY     FLS
Sbjct: 1   MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFKYFFLFFFLS 60

Query: 92  FSGKC----------LNSCSALQFAFLLHYSVVI 112
           F  KC          LN+CS+LQF+FLLHY VV+
Sbjct: 61  FLVKCLDSLNYSTVSLNACSSLQFSFLLHYFVVM 94

[Close]

BLAST of Lsi03G020090.1 vs. NCBI nr
Match: CAD5322558.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 128.3 bits (321), Expect = 8.1e-26
Identity = 79/143 (55.24%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 32  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGK 91
           MEKYFGNAYRGDPGVPHAD DRFVNIWIGSAAFSVLTW NPYMWQLSNQFKY  LS S +
Sbjct: 1   MEKYFGNAYRGDPGVPHADADRFVNIWIGSAAFSVLTWVNPYMWQLSNQFKYFSLSLSLE 60

Query: 92  CLNSCSALQFAFLLHYSVVIVLMFNFCSNSFTFFLVVGMTKRFCLSNTTGKRHVKRISHT 151
             NS        L   + V+++     S        V MT   CLS+TTGK+  +R +  
Sbjct: 61  LSNS-------NLGELNEVVIIGIAKTS--------VTMTSGCCLSSTTGKKQGQRSNLM 120

Query: 152 NSSGISTWTSTTGIPIIITGLCT 175
           NSSGI  +   +G   I TG  T
Sbjct: 121 NSSGI-RYPKKSGTRTITTGQST 127

[Close]

BLAST of Lsi03G020090.1 vs. NCBI nr
Match: MBA0857769.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-24
Identity = 76/152 (50.00%), Postives = 90/152 (59.21%), Query Frame = 0


Query: 32  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGK 91
           MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++  
Sbjct: 1   MEKYFGNAYRGDPGVPHAGPDRFVNIWIGSAAFSVLTWFNPYMWQLTNQFKWQILHYANL 60

Query: 92  CL---------NSCSALQFAFLLHYSVVIVLMFNFCSNSFTFFLVVGMTKRFCLSNTTGK 151
                       +CS + F +LL +S+ I    ++   +  F        +        K
Sbjct: 61  AFIYTFLFVLDIACSRVSF-YLLIWSMSIC---SWHDKAMIFEHYHWKKAKAKNQPYKFK 120

Query: 152 RHVKRISHTNSSGISTWTSTTGIPIIITGLCT 175
           R  K  S    SG+STWT  TG  II TGL T
Sbjct: 121 RSHKPFSFVLFSGMSTWTRITGTRIISTGLST 148

[Close]

BLAST of Lsi03G020090.1 vs. NCBI nr
Match: MBA0588026.1 (hypothetical protein [Gossypium raimondii])

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-24
Identity = 75/152 (49.34%), Postives = 88/152 (57.89%), Query Frame = 0


Query: 32  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGK 91
           MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++  
Sbjct: 1   MEKYFGNAYRGDPGVPHAGPDRFVNIWIGSAAFSVLTWFNPYMWQLTNQFKWQILQYT-- 60

Query: 92  CLNSCSALQFAFLLHYS------VVIVLMFNFCS---NSFTFFLVVGMTKRFCLSNTTGK 151
             N      F F+L  +       +++   + CS    +  F        +        K
Sbjct: 61  --NLAFIYTFLFILDIACSRVSFYLLIWSMSICSWHDKAMIFEHYHWKKAKAKNQPYKFK 120

Query: 152 RHVKRISHTNSSGISTWTSTTGIPIIITGLCT 175
           R  K  S    SG+STWT  TG  II TGL T
Sbjct: 121 RSHKPFSFVLFSGMSTWTRITGTRIISTGLST 148

[Close]

BLAST of Lsi03G020090.1 vs. NCBI nr
Match: MBA0830302.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-24
Identity = 75/154 (48.70%), Postives = 90/154 (58.44%), Query Frame = 0


Query: 32  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKYSFLSFSGK 91
           MEKYFGNAYRGDPGVPHA PDRFVNIWIGSAAFSVLTWFNPYMWQL+NQFK+  L ++  
Sbjct: 1   MEKYFGNAYRGDPGVPHAGPDRFVNIWIGSAAFSVLTWFNPYMWQLTNQFKWQILHYTNL 60

Query: 92  CL---------NSCSALQFAFLLHYSVVIVLMFN--FCSNSFTFFLVVGMTKRFCLSNTT 151
                       +CS + F +LL +S+ I    +       + +       + +      
Sbjct: 61  AFIYTFLFILDIACSRVSF-YLLIWSMSICSWHDKAMIFEHYHWKKAKAKNQPYKFKVLD 120

Query: 152 GKRHVKRISHTNSSGISTWTSTTGIPIIITGLCT 175
            KR  K  S    SG+STWT  TG  II TGL T
Sbjct: 121 IKRSHKPFSFVLFSGMSTWTRITGTRIISTGLST 153

[Close]

BLAST of Lsi03G020090.1 vs. TAIR 10
Match: AT3G09860.1 (unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 112.1 bits (279), Expect = 5.6e-25
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 32 MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFKY 84
          MEKYFGNAYRGDPGVPHAD DRFVNIWIGSAAFSVLTW NPYMWQLSNQF Y
Sbjct: 1  MEKYFGNAYRGDPGVPHADADRFVNIWIGSAAFSVLTWVNPYMWQLSNQFNY 52

The following BLAST results are available for this feature:

BLAST of Lsi03G020090.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G020090.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNH7	4.2e-28	71.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7G2EL77	3.9e-26	55.24	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOC...	[more]
A0A7J9LHD3	1.7e-24	50.00	Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_016979 PE=4...	[more]
A0A7J8PFY2	2.2e-24	49.34	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_001142 PE=4 SV=...	[more]
A0A7J9J7C6	2.2e-24	48.70	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_014844 PE=4 S...	[more]

BLAST of Lsi03G020090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043996.1	8.7e-28	71.28	hypothetical protein E6C27_scaffold236G003420 [Cucumis melo var. makuwa] >TYK251...	[more]
CAD5322558.1	8.1e-26	55.24	unnamed protein product [Arabidopsis thaliana]	[more]
MBA0857769.1	3.4e-24	50.00	hypothetical protein [Gossypium schwendimanii]	[more]
MBA0588026.1	4.5e-24	49.34	hypothetical protein [Gossypium raimondii]	[more]
MBA0830302.1	4.5e-24	48.70	hypothetical protein [Gossypium armourianum]	[more]

BLAST of Lsi03G020090.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09860.1	5.6e-25	94.23	unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36360	ACTIN T1-LIKE PROTEIN	coord: 30..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G020090	Lsi03G020090	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G020090.1.exon.3	Lsi03G020090.1.exon.3	exon
Lsi03G020090.1.exon.2	Lsi03G020090.1.exon.2	exon
Lsi03G020090.1.exon.1	Lsi03G020090.1.exon.1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G020090.1.three_prime_UTR.1	Lsi03G020090.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G020090.1.CDS.3	Lsi03G020090.1.CDS.3	CDS
Lsi03G020090.1.CDS.2	Lsi03G020090.1.CDS.2	CDS
Lsi03G020090.1.CDS.1	Lsi03G020090.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G020090.1	Lsi03G020090.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane