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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGATTGTGGATTGGAACTTTCTGGATAAGATCTTGGCTAAGAAGGGTTTTGGTTATCGATGGAGATCATGGGTCTGGAGTTGTATGCGATTAGTTAGGTATTCAATTCTCATTAACAAATGCCCCAAAGTTAGGATTCACGTGTCTCGTGGCAAGGAGACACTCTATCTCCCTTCATCTTTCTTCTCGTGGTGGATGTGTTGAGTAGAATGGTCTCCAGAGGGGTGGAGGGAGATATCATTGAGGGTTTTAAGGTGGGTAAGGAGTGCGTTTCTTTATCTCACCTTCAGTTTGCTGATGATATTATCTTCTTCTGCTCGGGGAAGGAGGAAGCCTTTCTTATCTTAAATCATATGCTCGCCTTCTTTGGGAGGATGTATGGGCTTAAGATTAGTAGAAGTTAA mRNA sequence ATGATTGTGGATTGGAACTTTCTGGATAAGATCTTGGCTAAGAAGGGTTTTGGTTATCGATGGAGATCATGGGTCTGGAGTTGTATGCGATTAGTTAGAATGGTCTCCAGAGGGGTGGAGGGAGATATCATTGAGGGTTTTAAGGTGGGTAAGGAGTGCGTTTCTTTATCTCACCTTCAGTTTGCTGATGATATTATCTTCTTCTGCTCGGGGAAGGAGGAAGCCTTTCTTATCTTAAATCATATGCTCGCCTTCTTTGGGAGGATGTATGGGCTTAAGATTAGTAGAAGTTAA Coding sequence (CDS) ATGATTGTGGATTGGAACTTTCTGGATAAGATCTTGGCTAAGAAGGGTTTTGGTTATCGATGGAGATCATGGGTCTGGAGTTGTATGCGATTAGTTAGAATGGTCTCCAGAGGGGTGGAGGGAGATATCATTGAGGGTTTTAAGGTGGGTAAGGAGTGCGTTTCTTTATCTCACCTTCAGTTTGCTGATGATATTATCTTCTTCTGCTCGGGGAAGGAGGAAGCCTTTCTTATCTTAAATCATATGCTCGCCTTCTTTGGGAGGATGTATGGGCTTAAGATTAGTAGAAGTTAA Protein sequence MIVDWNFLDKILAKKGFGYRWRSWVWSCMRLVRMVSRGVEGDIIEGFKVGKECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKISRS
Homology
BLAST of Lag0042169.1 vs. NCBI nr
Match: RVW36772.1 (hypothetical protein CK203_101570 [Vitis vinifera]) HSP 1 Score: 95.9 bits (237), Expect = 2.0e-16 Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query: 3 VDWNFLDKILAKKGFGYRWRSWVWSCMRLV-------RMVSRGVEGDIIEGFKVGKECVS 62
V W+FLD +L KGF RWR W+ C+ V RM+ + E +++EGF+VG+
Sbjct: 51 VSWDFLDHVLEMKGFSLRWRKWMRGCLSSVFLCSPSERMLLKAEERNVLEGFRVGRNRTR 110
Query: 63 LSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
+SHLQFADD IFF S +EE + L ++L FG + GLK++
Sbjct: 111 VSHLQFADDTIFFSSTREEDMMTLKNVLLVFGHISGLKVN 150
BLAST of Lag0042169.1 vs. NCBI nr
Match: RVX02463.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]) HSP 1 Score: 94.4 bits (233), Expect = 5.9e-16 Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 0
Query: 3 VDWNFLDKILAKKGFGYRWRSWVWSCMR-----------LVRMVSRGVEGDIIEGFKVGK 62
V W+FLD +L KKGF RWR W+ C+ L RM+ R E +++EGF+VG+
Sbjct: 300 VKWDFLDHVLEKKGFSPRWRKWMSGCLSSVFLCNLVADVLSRMLMRAEERNMLEGFRVGR 359
Query: 63 ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
+SHLQFADDIIFF + +EE L +L FG + GLK++
Sbjct: 360 NRTRVSHLQFADDIIFFSNIREEDLQTLKSLLLVFGHISGLKVN 403
BLAST of Lag0042169.1 vs. NCBI nr
Match: RVW25786.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]) HSP 1 Score: 94.4 bits (233), Expect = 5.9e-16 Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 0
Query: 3 VDWNFLDKILAKKGFGYRWRSWVWSCMR-----------LVRMVSRGVEGDIIEGFKVGK 62
V W+FLD +L KKGF RWR W+ C+ L RM+ R E +++EGF+VG+
Sbjct: 219 VKWDFLDHVLEKKGFSPRWRKWMSGCLSSVSFAILVNDVLSRMLMRAEERNMLEGFRVGR 278
Query: 63 ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
+SHLQFADD IFF + +EE L +L FG + GLK++
Sbjct: 279 NRTRVSHLQFADDTIFFSNSREEELQTLKSLLLVFGHISGLKVN 322
BLAST of Lag0042169.1 vs. NCBI nr
Match: RVW97471.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]) HSP 1 Score: 94.0 bits (232), Expect = 7.7e-16 Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 0
Query: 3 VDWNFLDKILAKKGFGYRWRSWVWSCMRLVR-----------MVSRGVEGDIIEGFKVGK 62
V W+FLD +L KKGF RWR W+ C+ +V M+ R E + +EGF+V +
Sbjct: 282 VSWDFLDHVLEKKGFSPRWRKWIRCCLSMVSFAVLVNGNVKGMLLRAEERNSLEGFRVDR 341
Query: 63 ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
+SHLQFADD IFF S +EE L +L FGR++GLK++
Sbjct: 342 NKTRVSHLQFADDTIFFSSTREEDLQTLKSLLLVFGRIFGLKVN 385
BLAST of Lag0042169.1 vs. NCBI nr
Match: RVW32868.1 (DExH-box ATP-dependent RNA helicase DExH14 [Vitis vinifera]) HSP 1 Score: 93.6 bits (231), Expect = 1.0e-15 Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 0
Query: 3 VDWNFLDKILAKKGFGYRWRSWVWSCMR-----------LVRMVSRGVEGDIIEGFKVGK 62
V W FLD +L KGF RWR W+ C+ L RM+ R E +++EGF+VG+
Sbjct: 963 VSWGFLDHVLEMKGFSPRWRQWMRGCLSSVSFAVLVNDILSRMLLRAEERNVLEGFRVGR 1022
Query: 63 ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
+SHLQFADD IFF S +EE + L +L FG + GLK++
Sbjct: 1023 NRTRVSHLQFADDTIFFSSTREEDMMTLKSVLLVFGHISGLKVN 1066
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| RVW36772.1 | 2.0e-16 | 44.00 | hypothetical protein CK203_101570 [Vitis vinifera] | [more] |
| RVX02463.1 | 5.9e-16 | 44.23 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
| RVW25786.1 | 5.9e-16 | 43.27 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
| RVW97471.1 | 7.7e-16 | 43.27 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
| RVW32868.1 | 1.0e-15 | 43.27 | DExH-box ATP-dependent RNA helicase DExH14 [Vitis vinifera] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Lag0042169 | Lag0042169 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Lag0042169.1.exon1 | Lag0042169.1.exon1 | exon |
| Lag0042169.1.exon2 | Lag0042169.1.exon2 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| cds.Lag0042169.1 | cds.Lag0042169.1 | CDS |
| cds.Lag0042169.1 | cds.Lag0042169.1_2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Lag0042169.1 | Lag0042169.1-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
|
