Lag0042169 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0042169
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	chr13: 37751512 .. 37751915 (+)
RNA-Seq Expression	Lag0042169
Synteny	Lag0042169

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTGGATTGGAACTTTCTGGATAAGATCTTGGCTAAGAAGGGTTTTGGTTATCGATGGAGATCATGGGTCTGGAGTTGTATGCGATTAGTTAGGTATTCAATTCTCATTAACAAATGCCCCAAAGTTAGGATTCACGTGTCTCGTGGCAAGGAGACACTCTATCTCCCTTCATCTTTCTTCTCGTGGTGGATGTGTTGAGTAGAATGGTCTCCAGAGGGGTGGAGGGAGATATCATTGAGGGTTTTAAGGTGGGTAAGGAGTGCGTTTCTTTATCTCACCTTCAGTTTGCTGATGATATTATCTTCTTCTGCTCGGGGAAGGAGGAAGCCTTTCTTATCTTAAATCATATGCTCGCCTTCTTTGGGAGGATGTATGGGCTTAAGATTAGTAGAAGTTAA

mRNA sequence

ATGATTGTGGATTGGAACTTTCTGGATAAGATCTTGGCTAAGAAGGGTTTTGGTTATCGATGGAGATCATGGGTCTGGAGTTGTATGCGATTAGTTAGAATGGTCTCCAGAGGGGTGGAGGGAGATATCATTGAGGGTTTTAAGGTGGGTAAGGAGTGCGTTTCTTTATCTCACCTTCAGTTTGCTGATGATATTATCTTCTTCTGCTCGGGGAAGGAGGAAGCCTTTCTTATCTTAAATCATATGCTCGCCTTCTTTGGGAGGATGTATGGGCTTAAGATTAGTAGAAGTTAA

Coding sequence (CDS)

ATGATTGTGGATTGGAACTTTCTGGATAAGATCTTGGCTAAGAAGGGTTTTGGTTATCGATGGAGATCATGGGTCTGGAGTTGTATGCGATTAGTTAGAATGGTCTCCAGAGGGGTGGAGGGAGATATCATTGAGGGTTTTAAGGTGGGTAAGGAGTGCGTTTCTTTATCTCACCTTCAGTTTGCTGATGATATTATCTTCTTCTGCTCGGGGAAGGAGGAAGCCTTTCTTATCTTAAATCATATGCTCGCCTTCTTTGGGAGGATGTATGGGCTTAAGATTAGTAGAAGTTAA

Protein sequence

MIVDWNFLDKILAKKGFGYRWRSWVWSCMRLVRMVSRGVEGDIIEGFKVGKECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKISRS

Homology

[Close]

BLAST of Lag0042169 vs. NCBI nr
Match: RVW36772.1 (hypothetical protein CK203_101570 [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-16
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 3   VDWNFLDKILAKKGFGYRWRSWVWSCMRLV-------RMVSRGVEGDIIEGFKVGKECVS 62
           V W+FLD +L  KGF  RWR W+  C+  V       RM+ +  E +++EGF+VG+    
Sbjct: 51  VSWDFLDHVLEMKGFSLRWRKWMRGCLSSVFLCSPSERMLLKAEERNVLEGFRVGRNRTR 110

Query: 63  LSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
           +SHLQFADD IFF S +EE  + L ++L  FG + GLK++
Sbjct: 111 VSHLQFADDTIFFSSTREEDMMTLKNVLLVFGHISGLKVN 150

[Close]

BLAST of Lag0042169 vs. NCBI nr
Match: RVX02463.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 5.9e-16
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 3   VDWNFLDKILAKKGFGYRWRSWVWSCMR-----------LVRMVSRGVEGDIIEGFKVGK 62
           V W+FLD +L KKGF  RWR W+  C+            L RM+ R  E +++EGF+VG+
Sbjct: 300 VKWDFLDHVLEKKGFSPRWRKWMSGCLSSVFLCNLVADVLSRMLMRAEERNMLEGFRVGR 359

Query: 63  ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
               +SHLQFADDIIFF + +EE    L  +L  FG + GLK++
Sbjct: 360 NRTRVSHLQFADDIIFFSNIREEDLQTLKSLLLVFGHISGLKVN 403

[Close]

BLAST of Lag0042169 vs. NCBI nr
Match: RVW25786.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 5.9e-16
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 3   VDWNFLDKILAKKGFGYRWRSWVWSCMR-----------LVRMVSRGVEGDIIEGFKVGK 62
           V W+FLD +L KKGF  RWR W+  C+            L RM+ R  E +++EGF+VG+
Sbjct: 219 VKWDFLDHVLEKKGFSPRWRKWMSGCLSSVSFAILVNDVLSRMLMRAEERNMLEGFRVGR 278

Query: 63  ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
               +SHLQFADD IFF + +EE    L  +L  FG + GLK++
Sbjct: 279 NRTRVSHLQFADDTIFFSNSREEELQTLKSLLLVFGHISGLKVN 322

[Close]

BLAST of Lag0042169 vs. NCBI nr
Match: RVW97471.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 7.7e-16
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 3   VDWNFLDKILAKKGFGYRWRSWVWSCMRLVR-----------MVSRGVEGDIIEGFKVGK 62
           V W+FLD +L KKGF  RWR W+  C+ +V            M+ R  E + +EGF+V +
Sbjct: 282 VSWDFLDHVLEKKGFSPRWRKWIRCCLSMVSFAVLVNGNVKGMLLRAEERNSLEGFRVDR 341

Query: 63  ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
               +SHLQFADD IFF S +EE    L  +L  FGR++GLK++
Sbjct: 342 NKTRVSHLQFADDTIFFSSTREEDLQTLKSLLLVFGRIFGLKVN 385

[Close]

BLAST of Lag0042169 vs. NCBI nr
Match: RVW32868.1 (DExH-box ATP-dependent RNA helicase DExH14 [Vitis vinifera])

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-15
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 3    VDWNFLDKILAKKGFGYRWRSWVWSCMR-----------LVRMVSRGVEGDIIEGFKVGK 62
            V W FLD +L  KGF  RWR W+  C+            L RM+ R  E +++EGF+VG+
Sbjct: 963  VSWGFLDHVLEMKGFSPRWRQWMRGCLSSVSFAVLVNDILSRMLLRAEERNVLEGFRVGR 1022

Query: 63   ECVSLSHLQFADDIIFFCSGKEEAFLILNHMLAFFGRMYGLKIS 96
                +SHLQFADD IFF S +EE  + L  +L  FG + GLK++
Sbjct: 1023 NRTRVSHLQFADDTIFFSSTREEDMMTLKSVLLVFGHISGLKVN 1066

The following BLAST results are available for this feature:

BLAST of Lag0042169 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW36772.1	2.0e-16	44.00	hypothetical protein CK203_101570 [Vitis vinifera]	[more]
RVX02463.1	5.9e-16	44.23	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW25786.1	5.9e-16	43.27	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW97471.1	7.7e-16	43.27	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW32868.1	1.0e-15	43.27	DExH-box ATP-dependent RNA helicase DExH14 [Vitis vinifera]	[more]

BLAST of Lag0042169 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0042169.1	Lag0042169.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity