Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCGCCCACGACATCACGATCTCAGTAGATAGAGTCATGTTATTCTATTGCATTACGAAGGGGTTGAAGATCAACATTGGAAGCATAATCAGGGACGAGATTCTTGCCTGTGGAAGAAAAAAAGCAGGCAAACTTTTATTTGGACCACTTATCACCCTGCTCTGTCAAAGGGTGAAGATAGTTCCAGGCAAGGACGAGGAGCGTCATTTCTTCAAGTCGACAATTGACCTGTCTTTGATCGGGAAGCTCCAACAAAACAACATCCAGAGGAACGACAAAGCCTCAACATCTCAGGCCACTCCACCATCAGGGCCGAATGTAGCTTCTCCATCCCAGCACACTTCTTTTATAGGGCCCTTGATAGAGGACAAAAATGTCATTATTTTAATCCCAATTTATTAA mRNA sequence
ATGCCAACCGCCCACGACATCACGATCTCAGTAGATAGAGTCATGTTATTCTATTGCATTACGAAGGGGTTGAAGATCAACATTGGAAGCATAATCAGGGACGAGATTCTTGCCTGTGGAAGAAAAAAAGCAGGCAAACTTTTATTTGGACCACTTATCACCCTGCTCTGTCAAAGGGTGAAGATAGTTCCAGGCAAGGACGAGGAGCGTCATTTCTTCAAGTCGACAATTGACCTGTCTTTGATCGGGAAGCTCCAACAAAACAACATCCAGAGGAACGACAAAGCCTCAACATCTCAGGCCACTCCACCATCAGGGCCGAATGTAGCTTCTCCATCCCAGCACACTTCTTTTATAGGGCCCTTGATAGAGGACAAAAATGTCATTATTTTAATCCCAATTTATTAA Coding sequence (CDS)
ATGCCAACCGCCCACGACATCACGATCTCAGTAGATAGAGTCATGTTATTCTATTGCATTACGAAGGGGTTGAAGATCAACATTGGAAGCATAATCAGGGACGAGATTCTTGCCTGTGGAAGAAAAAAAGCAGGCAAACTTTTATTTGGACCACTTATCACCCTGCTCTGTCAAAGGGTGAAGATAGTTCCAGGCAAGGACGAGGAGCGTCATTTCTTCAAGTCGACAATTGACCTGTCTTTGATCGGGAAGCTCCAACAAAACAACATCCAGAGGAACGACAAAGCCTCAACATCTCAGGCCACTCCACCATCAGGGCCGAATGTAGCTTCTCCATCCCAGCACACTTCTTTTATAGGGCCCTTGATAGAGGACAAAAATGTCATTATTTTAATCCCAATTTATTAA Protein sequence
MPTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKAGKLLFGPLITLLCQRVKIVPGKDEERHFFKSTIDLSLIGKLQQNNIQRNDKASTSQATPPSGPNVASPSQHTSFIGPLIEDKNVIILIPIY
Homology
BLAST of Lag0026143.1 vs. NCBI nr
Match:
PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])
HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 39/114 (34.21%), Postives = 58/114 (50.88%), Query Frame = 0
Query: 1 MPTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKAGKLLFGPLITLLCQRV 60 +PT H T+S DR++L Y + G IN+G +I EI AC +K+G L F LIT LC+ Sbjct: 57 LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116 Query: 61 KIVPGKDEERHFFKSTIDLSLIGKLQQNNIQRNDKASTSQATPPSGPNVASPSQ 115 + +EE+ ID + ++ Q + +Q S P VAS S+ Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEG-----QTELTQQPSTSRPTVASSSR 165
BLAST of Lag0026143.1 vs. NCBI nr
Match:
KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])
HSP 1 Score: 67.8 bits (164), Expect = 8.3e-08
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 0
Query: 1 MPTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKAGKLLFGPLITLLCQRV 60 +PT+HD T+S +R+ + YCI KG KIN+G +I EI C + GKL F LIT C+ Sbjct: 886 LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945 Query: 61 KIVPGKDEE 70 + DE+ Sbjct: 946 NVPMLNDED 954
BLAST of Lag0026143.1 vs. NCBI nr
Match:
MCI09484.1 (hypothetical protein [Trifolium medium])
HSP 1 Score: 65.1 bits (157), Expect = 5.4e-07
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 0
Query: 1 MPTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKA--GKLLFGPLITLLCQ 60 MPT H+ T++ R++L +CI G KIN+G II EI+ C KK+ G L F LIT LC+ Sbjct: 40 MPTTHNETVNKARLVLLHCIIAGQKINVGRIIHQEIVNCSAKKSNEGMLYFPCLITELCK 99 Query: 61 RVKI-VPGKDE----ERHFFKSTIDLSLIGKLQQNNIQRNDKASTSQA 102 + + V G+DE F + I+ L G + Q+ +A+TS A Sbjct: 100 KNLVHVSGRDEVFQPTNSFDQKAIETLLKGNTGRKPRQQLPEATTSAA 147
BLAST of Lag0026143.1 vs. NCBI nr
Match:
XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])
HSP 1 Score: 65.1 bits (157), Expect = 5.4e-07
Identity = 32/103 (31.07%), Postives = 57/103 (55.34%), Query Frame = 0
Query: 2 PTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKAGKLLFGPLITLLCQRVK 61 PT HD +ISV++++L YC+ G IN+G ++ IL C +++ GKL F LI L + Sbjct: 350 PTTHDSSISVEKIILLYCVVTGRTINVGKVVEKAILYCSKRRQGKLFFPSLIHKLLMQAG 409 Query: 62 IVPGKDE---ERHFFKSTIDLSLIGKLQQNNIQRNDKASTSQA 102 + D+ + K TID+ + KL++ + + + ++A Sbjct: 410 VPEYTDDLVIKECEEKWTIDMKAVSKLRERSERGRELPGVTRA 452
BLAST of Lag0026143.1 vs. NCBI nr
Match:
PON65869.1 (hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii])
HSP 1 Score: 64.7 bits (156), Expect = 7.0e-07
Identity = 40/117 (34.19%), Postives = 57/117 (48.72%), Query Frame = 0
Query: 1 MPTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKAGKLLFGPLITLLCQRV 60 +PT H +S + V+L Y + G IN+G II EI AC +K G L F LIT +C+ Sbjct: 24 LPTTHGKIVSKECVLLLYSMLTGKSINVGRIIHREICACAARKPGALFFPSLITRMCRNA 83 Query: 61 KIVPGKDEERHFFKSTIDLSLIGKLQQNNIQRNDKASTSQATPPSGPNVASPSQHTS 118 + +EE+ ID + ++ Q A S + S P+VAS S TS Sbjct: 84 RAPYLVNEEKLHNTGEIDAIAVARIAQEG-----PAEPSHRSSSSRPSVASSSSTTS 135
The following BLAST results are available for this feature:
Match Name E-value Identity Description
PON59596.1 4.9e-08 34.21 hypothetical protein PanWU01x14_158080 [Parasponia andersonii] [more]
KAF4375842.1 8.3e-08 43.48 hypothetical protein G4B88_026421 [Cannabis sativa] [more]
MCI09484.1 5.4e-07 38.89 hypothetical protein [Trifolium medium] [more]
XP_024971944.1 5.4e-07 31.07 uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus] [more]
PON65869.1 7.0e-07 34.19 hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G C C A A C C G C C C A C G A C A T C A C G A T C T C A G T A G A T A G A G T C A T G T T A T T C T A T T G C A T T A C G A A G G G G T T G A A G A T C A A C A T T G G A A G C A T A A T C A G G G A C G A G A T T C T T G C C T G T G G A A G A A A A A A A G C A G G C A A A C T T T T A T T T G G A C C A C T T A T C A C C C T G C T C T G T C A A A G G G T G A A G A T A G T T C C A G G C A A G G A C G A G G A G C G T C A T T T C T T C A A G T C G A C A A T T G A C C T G T C T T T G A T C G G G A A G C T C C A A C A A A A C A A C A T C C A G A G G A A C G A C A A A G C C T C A A C A T C T C A G G C C A C T C C A C C A T C A G G G C C G A A T G T A G C T T C T C C A T C C C A G C A C A C T T C T T T T A T A G G G C C C T T G A T A G A G G A C A A A A A T G T C A T T A T T T T A A T C C C A A T T T A T T A A 50 100 150 200 250 300 350 400 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 92..114
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name Unique Name Type
Lag0026143 Lag0026143 gene
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
Lag0026143.1.exon1 Lag0026143.1.exon1 exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
cds.Lag0026143.1 cds.Lag0026143.1 CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
Lag0026143.1 Lag0026143.1-protein polypeptide