Lag0026143 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026143
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDrebrin-like
Locationchr10: 30471089 .. 30471496 (+)
RNA-Seq ExpressionLag0026143
SyntenyLag0026143
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCGCCCACGACATCACGATCTCAGTAGATAGAGTCATGTTATTCTATTGCATTACGAAGGGGTTGAAGATCAACATTGGAAGCATAATCAGGGACGAGATTCTTGCCTGTGGAAGAAAAAAAGCAGGCAAACTTTTATTTGGACCACTTATCACCCTGCTCTGTCAAAGGGTGAAGATAGTTCCAGGCAAGGACGAGGAGCGTCATTTCTTCAAGTCGACAATTGACCTGTCTTTGATCGGGAAGCTCCAACAAAACAACATCCAGAGGAACGACAAAGCCTCAACATCTCAGGCCACTCCACCATCAGGGCCGAATGTAGCTTCTCCATCCCAGCACACTTCTTTTATAGGGCCCTTGATAGAGGACAAAAATGTCATTATTTTAATCCCAATTTATTAA

mRNA sequence

ATGCCAACCGCCCACGACATCACGATCTCAGTAGATAGAGTCATGTTATTCTATTGCATTACGAAGGGGTTGAAGATCAACATTGGAAGCATAATCAGGGACGAGATTCTTGCCTGTGGAAGAAAAAAAGCAGGCAAACTTTTATTTGGACCACTTATCACCCTGCTCTGTCAAAGGGTGAAGATAGTTCCAGGCAAGGACGAGGAGCGTCATTTCTTCAAGTCGACAATTGACCTGTCTTTGATCGGGAAGCTCCAACAAAACAACATCCAGAGGAACGACAAAGCCTCAACATCTCAGGCCACTCCACCATCAGGGCCGAATGTAGCTTCTCCATCCCAGCACACTTCTTTTATAGGGCCCTTGATAGAGGACAAAAATGTCATTATTTTAATCCCAATTTATTAA

Coding sequence (CDS)

ATGCCAACCGCCCACGACATCACGATCTCAGTAGATAGAGTCATGTTATTCTATTGCATTACGAAGGGGTTGAAGATCAACATTGGAAGCATAATCAGGGACGAGATTCTTGCCTGTGGAAGAAAAAAAGCAGGCAAACTTTTATTTGGACCACTTATCACCCTGCTCTGTCAAAGGGTGAAGATAGTTCCAGGCAAGGACGAGGAGCGTCATTTCTTCAAGTCGACAATTGACCTGTCTTTGATCGGGAAGCTCCAACAAAACAACATCCAGAGGAACGACAAAGCCTCAACATCTCAGGCCACTCCACCATCAGGGCCGAATGTAGCTTCTCCATCCCAGCACACTTCTTTTATAGGGCCCTTGATAGAGGACAAAAATGTCATTATTTTAATCCCAATTTATTAA

Protein sequence

MPTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKAGKLLFGPLITLLCQRVKIVPGKDEERHFFKSTIDLSLIGKLQQNNIQRNDKASTSQATPPSGPNVASPSQHTSFIGPLIEDKNVIILIPIY
Homology
BLAST of Lag0026143 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 39/114 (34.21%), Postives = 58/114 (50.88%), Query Frame = 0

Query: 1   MPTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKAGKLLFGPLITLLCQRV 60
           +PT H  T+S DR++L Y +  G  IN+G +I  EI AC  +K+G L F  LIT LC+  
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KIVPGKDEERHFFKSTIDLSLIGKLQQNNIQRNDKASTSQATPPSGPNVASPSQ 115
           +     +EE+      ID   + ++ Q       +   +Q    S P VAS S+
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEG-----QTELTQQPSTSRPTVASSSR 165

BLAST of Lag0026143 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 67.8 bits (164), Expect = 8.3e-08
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 0

Query: 1   MPTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKAGKLLFGPLITLLCQRV 60
           +PT+HD T+S +R+ + YCI KG KIN+G +I  EI  C  +  GKL F  LIT  C+  
Sbjct: 886 LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61  KIVPGKDEE 70
            +    DE+
Sbjct: 946 NVPMLNDED 954

BLAST of Lag0026143 vs. NCBI nr
Match: MCI09484.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-07
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 0

Query: 1   MPTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKA--GKLLFGPLITLLCQ 60
           MPT H+ T++  R++L +CI  G KIN+G II  EI+ C  KK+  G L F  LIT LC+
Sbjct: 40  MPTTHNETVNKARLVLLHCIIAGQKINVGRIIHQEIVNCSAKKSNEGMLYFPCLITELCK 99

Query: 61  RVKI-VPGKDE----ERHFFKSTIDLSLIGKLQQNNIQRNDKASTSQA 102
           +  + V G+DE       F +  I+  L G   +   Q+  +A+TS A
Sbjct: 100 KNLVHVSGRDEVFQPTNSFDQKAIETLLKGNTGRKPRQQLPEATTSAA 147

BLAST of Lag0026143 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-07
Identity = 32/103 (31.07%), Postives = 57/103 (55.34%), Query Frame = 0

Query: 2   PTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKAGKLLFGPLITLLCQRVK 61
           PT HD +ISV++++L YC+  G  IN+G ++   IL C +++ GKL F  LI  L  +  
Sbjct: 350 PTTHDSSISVEKIILLYCVVTGRTINVGKVVEKAILYCSKRRQGKLFFPSLIHKLLMQAG 409

Query: 62  IVPGKDE---ERHFFKSTIDLSLIGKLQQNNIQRNDKASTSQA 102
           +    D+   +    K TID+  + KL++ + +  +    ++A
Sbjct: 410 VPEYTDDLVIKECEEKWTIDMKAVSKLRERSERGRELPGVTRA 452

BLAST of Lag0026143 vs. NCBI nr
Match: PON65869.1 (hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii])

HSP 1 Score: 64.7 bits (156), Expect = 7.0e-07
Identity = 40/117 (34.19%), Postives = 57/117 (48.72%), Query Frame = 0

Query: 1   MPTAHDITISVDRVMLFYCITKGLKINIGSIIRDEILACGRKKAGKLLFGPLITLLCQRV 60
           +PT H   +S + V+L Y +  G  IN+G II  EI AC  +K G L F  LIT +C+  
Sbjct: 24  LPTTHGKIVSKECVLLLYSMLTGKSINVGRIIHREICACAARKPGALFFPSLITRMCRNA 83

Query: 61  KIVPGKDEERHFFKSTIDLSLIGKLQQNNIQRNDKASTSQATPPSGPNVASPSQHTS 118
           +     +EE+      ID   + ++ Q        A  S  +  S P+VAS S  TS
Sbjct: 84  RAPYLVNEEKLHNTGEIDAIAVARIAQEG-----PAEPSHRSSSSRPSVASSSSTTS 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON59596.14.9e-0834.21hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
KAF4375842.18.3e-0843.48hypothetical protein G4B88_026421 [Cannabis sativa][more]
MCI09484.15.4e-0738.89hypothetical protein [Trifolium medium][more]
XP_024971944.15.4e-0731.07uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus][more]
PON65869.17.0e-0734.19hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026143.1Lag0026143.1mRNA