Lag0020079.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0020079.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 47902003 .. 47902470 (-)
Sequence length468
RNA-Seq ExpressionLag0020079.1
SyntenyLag0020079.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCAAGCGTTCGACAATCTAAAACTTGTTGGTAATCTTGTATCTCTCGGTGACCTTATCTCTTATGTACTTGTTGGCTTAAACGACCCTTATTATATTCTGATTGTTTGTTCGATTGAGGATAAGGACATAAAAACATGGCAAGAATTGAGCTCAAGTTTAGTAACCTTTGAAGGCCCGTTAGCTAGATATAACACTATTAATAATGTTAATGGAGGAGATCAACTCCCTGATTTGGCTGCTCACTTAGCACTGAATAAGCAAGGTAGGTTCAGTAATCAACGACAGTTTAGCCCTAATACTGGAAATAGAGGTAATGGGAATGGATCTGGCAATGGTCAACCAAATTTTTCGAGGAACAATAATGGTGGAAACAAAGGAGGTCGAGGAAGAGGCAGAAACAATTATCAGAACAAAATATTAAGAAGAATCTACGTACCTTTTAAGATCTTAGACTTAGAATAA

mRNA sequence

ATGATGCAAGCGTTCGACAATCTAAAACTTGTTGGTAATCTTGTATCTCTCGGTGACCTTATCTCTTATGTACTTGTTGGCTTAAACGACCCTTATTATATTCTGATTGTTTGTTCGATTGAGGATAAGGACATAAAAACATGGCAAGAATTGAGCTCAAGTTTAGTAACCTTTGAAGGCCCGTTAGCTAGATATAACACTATTAATAATGTTAATGGAGGAGATCAACTCCCTGATTTGGCTGCTCACTTAGCACTGAATAAGCAAGGTAGGTTCAGTAATCAACGACAGTTTAGCCCTAATACTGGAAATAGAGGTAATGGGAATGGATCTGGCAATGGTCAACCAAATTTTTCGAGGAACAATAATGGTGGAAACAAAGGAGGTCGAGGAAGAGGCAGAAACAATTATCAGAACAAAATATTAAGAAGAATCTACGTACCTTTTAAGATCTTAGACTTAGAATAA

Coding sequence (CDS)

ATGATGCAAGCGTTCGACAATCTAAAACTTGTTGGTAATCTTGTATCTCTCGGTGACCTTATCTCTTATGTACTTGTTGGCTTAAACGACCCTTATTATATTCTGATTGTTTGTTCGATTGAGGATAAGGACATAAAAACATGGCAAGAATTGAGCTCAAGTTTAGTAACCTTTGAAGGCCCGTTAGCTAGATATAACACTATTAATAATGTTAATGGAGGAGATCAACTCCCTGATTTGGCTGCTCACTTAGCACTGAATAAGCAAGGTAGGTTCAGTAATCAACGACAGTTTAGCCCTAATACTGGAAATAGAGGTAATGGGAATGGATCTGGCAATGGTCAACCAAATTTTTCGAGGAACAATAATGGTGGAAACAAAGGAGGTCGAGGAAGAGGCAGAAACAATTATCAGAACAAAATATTAAGAAGAATCTACGTACCTTTTAAGATCTTAGACTTAGAATAA

Protein sequence

MMQAFDNLKLVGNLVSLGDLISYVLVGLNDPYYILIVCSIEDKDIKTWQELSSSLVTFEGPLARYNTINNVNGGDQLPDLAAHLALNKQGRFSNQRQFSPNTGNRGNGNGSGNGQPNFSRNNNGGNKGGRGRGRNNYQNKILRRIYVPFKILDLE
Homology
BLAST of Lag0020079.1 vs. NCBI nr
Match: QWX09785.1 (hydroxymethylglutaryl-CoA synthase [Pistacia terebinthus subsp. palaestina])

HSP 1 Score: 68.2 bits (165), Expect = 7.3e-08
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 2   MQAF-DNLKLVGNLVSLGDLISYVLVGLNDPYYILIVCSIEDKDIKTWQELSSSLVTFEG 61
           M+AF DNL L G+ +SL DLI+ +L+GL D  Y  IV  + DK+  +W EL ++L+TFE 
Sbjct: 168 MKAFSDNLTLAGSPISLSDLITQILIGL-DAEYTPIVVHLGDKESLSWIELQTTLLTFES 227

Query: 62  PLARYNTINNVNGGDQLPDLAAHLALNK 89
            L + NT    NGG  L    AH+A+N+
Sbjct: 228 RLEQLNTYQ--NGGINLSQATAHIAINR 252

BLAST of Lag0020079.1 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-07
Identity = 53/134 (39.55%), Postives = 74/134 (55.22%), Query Frame = 0

Query: 1   MMQAFDNLKLVGNLVSLGDLISYVLVGLNDPYYILIVCSIEDKDIKTWQELSSSLVTFEG 60
           M QA ++LKL G  V+   L+S VL GL +  Y+ IVC IE KD  +WQEL ++LVTFE 
Sbjct: 175 MKQASESLKLAGEPVAFNYLMSCVLSGL-EAEYLPIVCQIEGKDSTSWQELFATLVTFEN 234

Query: 61  PLARYNTINNVNGGDQLPDLAAHLALNKQGRFSNQRQFSPNTGNRGNGNGSGNGQPNFSR 120
            L R N ++     + + D + +   +KQ    N RQF  +   +G G GS      ++ 
Sbjct: 235 TLMRLNIVSTAT-AEGISDGSXNYVHSKQNSVGN-RQFHQSQSGQGQGRGS------YNS 294

Query: 121 NNNGGNKGGRGRGR 135
           N+   N  GRGRGR
Sbjct: 295 NDAKNNVRGRGRGR 299

BLAST of Lag0020079.1 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-07
Identity = 53/134 (39.55%), Postives = 74/134 (55.22%), Query Frame = 0

Query: 1   MMQAFDNLKLVGNLVSLGDLISYVLVGLNDPYYILIVCSIEDKDIKTWQELSSSLVTFEG 60
           M QA ++LKL G  V+   L+S VL GL +  Y+ IVC IE KD  +WQEL ++LVTFE 
Sbjct: 175 MKQASESLKLAGEPVAFNYLMSCVLSGL-EAEYLPIVCQIEGKDSTSWQELFATLVTFEN 234

Query: 61  PLARYNTINNVNGGDQLPDLAAHLALNKQGRFSNQRQFSPNTGNRGNGNGSGNGQPNFSR 120
            L R N ++     + + D + +   +KQ    N RQF  +   +G G GS      ++ 
Sbjct: 235 TLMRLNIVSTAT-AEGISDGSXNYVHSKQNSVGN-RQFHQSQSGQGQGRGS------YNS 294

Query: 121 NNNGGNKGGRGRGR 135
           N+   N  GRGRGR
Sbjct: 295 NDAKNNVRGRGRGR 299

BLAST of Lag0020079.1 vs. NCBI nr
Match: KAA0065397.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa] >TYK28882.1 putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 0

Query: 1   MMQAFDNLKLVGNLVSLGDLISYVLVGLNDPYYILIVCSIEDKDIKTWQELSSSLVTFEG 60
           M Q  DNL L G  V +GDL SYV++ L+  Y+ +     E K++ TWQ L S+LVTFE 
Sbjct: 10  MKQTADNLALAGASVDIGDLTSYVILELDAEYFPITFLFNEKKEM-TWQGLHSTLVTFEN 69

Query: 61  PLARYNTINNVNGGDQLPDLAAHLALNKQGRF---SNQRQFSPNTGNRGNGNGSGN 114
            L   N    VN   +  ++ A+L  N+Q  F   ++Q Q+   T  RG G G+ N
Sbjct: 70  ALINNNV---VNSNTEAANMTANLVFNRQNSFNQDNHQNQYRGQTQYRGQGRGNTN 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
QWX09785.17.3e-0845.45hydroxymethylglutaryl-CoA synthase [Pistacia terebinthus subsp. palaestina][more]
XP_022157748.12.1e-0739.55uncharacterized protein LOC111024384 isoform X1 [Momordica charantia][more]
XP_022157750.12.1e-0739.55uncharacterized protein LOC111024384 isoform X2 [Momordica charantia][more]
KAA0065397.11.1e-0638.79putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..133

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0020079Lag0020079gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0020079.1.exon1Lag0020079.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0020079.1cds.Lag0020079.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0020079.1Lag0020079.1-proteinpolypeptide