Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGTCAGTCGTCAGGTCAAGAAAGAGAGTGGAACAGAACCTAGTAAATCTCAATCTCATGTTTTATTTTGTCCCACATCGGTGAGGATGAAAGATGAGATGCGCGGATGGAGTATAAAAGAAAGTGGAGTGGGGAAGTTGAAACATACTTACCTGGACGGGGTGAATGGGCGATCAAGAAGGCCCATGGCCTGGGTTGGTGACCTCCATTGCACATTGGGGAGGGGTGCCCGCCCAAGGTCTGCTCAAAGTAGCAGAGCCTACGTCATAATTTGTGTTAGTGGGGGCCTGCGTTCGCGCGGCCCCTGCCCAATCTTCACTCTAATACTTCATCTAATGACAAATGTATGA mRNA sequence
ATGCTCGTCAGTCGTCAGGTCAAGAAAGAGAGTGGAACAGAACCTAGTAAATCTCAATCTCATGTTTTATTTTGTCCCACATCGGTGAGGATGAAAGATGAGATGCGCGGATGGAGTATAAAAGAAAGTGGAGTGGGGAAGTTGAAACATACTTACCTGGACGGGGTGAATGGGCGATCAAGAAGGCCCATGGCCTGGGTTGGTGACCTCCATTGCACATTGGGGAGGGGTGCCCGCCCAAGGTCTGCTCAAAGTAGCAGAGCCTACGTCATAATTTGTGTTAGTGGGGGCCTGCGTTCGCGCGGCCCCTGCCCAATCTTCACTCTAATACTTCATCTAATGACAAATGTATGA Coding sequence (CDS)
ATGCTCGTCAGTCGTCAGGTCAAGAAAGAGAGTGGAACAGAACCTAGTAAATCTCAATCTCATGTTTTATTTTGTCCCACATCGGTGAGGATGAAAGATGAGATGCGCGGATGGAGTATAAAAGAAAGTGGAGTGGGGAAGTTGAAACATACTTACCTGGACGGGGTGAATGGGCGATCAAGAAGGCCCATGGCCTGGGTTGGTGACCTCCATTGCACATTGGGGAGGGGTGCCCGCCCAAGGTCTGCTCAAAGTAGCAGAGCCTACGTCATAATTTGTGTTAGTGGGGGCCTGCGTTCGCGCGGCCCCTGCCCAATCTTCACTCTAATACTTCATCTAATGACAAATGTATGA Protein sequence
MLVSRQVKKESGTEPSKSQSHVLFCPTSVRMKDEMRGWSIKESGVGKLKHTYLDGVNGRSRRPMAWVGDLHCTLGRGARPRSAQSSRAYVIICVSGGLRSRGPCPIFTLILHLMTNV
Homology
BLAST of Lag0019927.1 vs. NCBI nr
Match:
OEL21690.1 (hypothetical protein BAE44_0017291, partial [Dichanthelium oligosanthes])
HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 0
Query: 48 LKHTYLDGVNGRSRRPMAWVGDLHCTLGRGARPRSAQSSRAYVIICVSGGLRSRGPCPIF 107 L HTYLDGV+GRSR+P+A V HCTL + + S R VIIC GG RSRGPC + Sbjct: 1 LLHTYLDGVDGRSRKPVALVSGSHCTL-QVRWLTISPSGRVDVIICDRGGTRSRGPCQFY 60 Query: 108 TL 110 + Sbjct: 61 EI 61
BLAST of Lag0019927.1 vs. NCBI nr
Match:
KAG6576784.1 (hypothetical protein SDJN03_24358, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 35/66 (53.03%), Postives = 40/66 (60.61%), Query Frame = 0
Query: 40 IKESGVGKLKHTYLDGVNGRSRRPMAWVGDLHCTLGRGARPRSAQSSRAYVIICVS---G 99 IK +GV LDGV GRSRR +AW GDLHCTLG GARP+ + S A + S G Sbjct: 8 IKRNGVATDSSLTLDGVYGRSRRLIAWDGDLHCTLGGGARPKRSCSKFAERLRLSSQRGG 67 Query: 100 GLRSRG 103 G R RG Sbjct: 68 GHRMRG 73
The following BLAST results are available for this feature:
Match Name E-value Identity Description
OEL21690.1 1.0e-06 53.23 hypothetical protein BAE44_0017291, partial [Dichanthelium oligosanthes] [more]
KAG6576784.1 1.1e-05 53.03 hypothetical protein SDJN03_24358, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G C T C G T C A G T C G T C A G G T C A A G A A A G A G A G T G G A A C A G A A C C T A G T A A A T C T C A A T C T C A T G T T T T A T T T T G T C C C A C A T C G G T G A G G A T G A A A G A T G A G A T G C G C G G A T G G A G T A T A A A A G A A A G T G G A G T G G G G A A G T T G A A A C A T A C T T A C C T G G A C G G G G T G A A T G G G C G A T C A A G A A G G C C C A T G G C C T G G G T T G G T G A C C T C C A T T G C A C A T T G G G G A G G G G T G C C C G C C C A A G G T C T G C T C A A A G T A G C A G A G C C T A C G T C A T A A T T T G T G T T A G T G G G G G C C T G C G T T C G C G C G G C C C C T G C C C A A T C T T C A C T C T A A T A C T T C A T C T A A T G A C A A A T G T A T G A 50 100 150 200 250 300 350 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..20
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name Unique Name Type
Lag0019927 Lag0019927 gene
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
Lag0019927.1.exon1 Lag0019927.1.exon1 exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
cds.Lag0019927.1 cds.Lag0019927.1 CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
Lag0019927.1 Lag0019927.1-protein polypeptide