Lag0019927 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019927
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 46774971 .. 46775324 (-)
RNA-Seq Expression	Lag0019927
Synteny	Lag0019927

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGTCAGTCGTCAGGTCAAGAAAGAGAGTGGAACAGAACCTAGTAAATCTCAATCTCATGTTTTATTTTGTCCCACATCGGTGAGGATGAAAGATGAGATGCGCGGATGGAGTATAAAAGAAAGTGGAGTGGGGAAGTTGAAACATACTTACCTGGACGGGGTGAATGGGCGATCAAGAAGGCCCATGGCCTGGGTTGGTGACCTCCATTGCACATTGGGGAGGGGTGCCCGCCCAAGGTCTGCTCAAAGTAGCAGAGCCTACGTCATAATTTGTGTTAGTGGGGGCCTGCGTTCGCGCGGCCCCTGCCCAATCTTCACTCTAATACTTCATCTAATGACAAATGTATGA

mRNA sequence

ATGCTCGTCAGTCGTCAGGTCAAGAAAGAGAGTGGAACAGAACCTAGTAAATCTCAATCTCATGTTTTATTTTGTCCCACATCGGTGAGGATGAAAGATGAGATGCGCGGATGGAGTATAAAAGAAAGTGGAGTGGGGAAGTTGAAACATACTTACCTGGACGGGGTGAATGGGCGATCAAGAAGGCCCATGGCCTGGGTTGGTGACCTCCATTGCACATTGGGGAGGGGTGCCCGCCCAAGGTCTGCTCAAAGTAGCAGAGCCTACGTCATAATTTGTGTTAGTGGGGGCCTGCGTTCGCGCGGCCCCTGCCCAATCTTCACTCTAATACTTCATCTAATGACAAATGTATGA

Coding sequence (CDS)

ATGCTCGTCAGTCGTCAGGTCAAGAAAGAGAGTGGAACAGAACCTAGTAAATCTCAATCTCATGTTTTATTTTGTCCCACATCGGTGAGGATGAAAGATGAGATGCGCGGATGGAGTATAAAAGAAAGTGGAGTGGGGAAGTTGAAACATACTTACCTGGACGGGGTGAATGGGCGATCAAGAAGGCCCATGGCCTGGGTTGGTGACCTCCATTGCACATTGGGGAGGGGTGCCCGCCCAAGGTCTGCTCAAAGTAGCAGAGCCTACGTCATAATTTGTGTTAGTGGGGGCCTGCGTTCGCGCGGCCCCTGCCCAATCTTCACTCTAATACTTCATCTAATGACAAATGTATGA

Protein sequence

MLVSRQVKKESGTEPSKSQSHVLFCPTSVRMKDEMRGWSIKESGVGKLKHTYLDGVNGRSRRPMAWVGDLHCTLGRGARPRSAQSSRAYVIICVSGGLRSRGPCPIFTLILHLMTNV

Homology

[Close]

BLAST of Lag0019927 vs. NCBI nr
Match: OEL21690.1 (hypothetical protein BAE44_0017291, partial [Dichanthelium oligosanthes])

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 48  LKHTYLDGVNGRSRRPMAWVGDLHCTLGRGARPRSAQSSRAYVIICVSGGLRSRGPCPIF 107
           L HTYLDGV+GRSR+P+A V   HCTL +      + S R  VIIC  GG RSRGPC  +
Sbjct: 1   LLHTYLDGVDGRSRKPVALVSGSHCTL-QVRWLTISPSGRVDVIICDRGGTRSRGPCQFY 60

Query: 108 TL 110
            +
Sbjct: 61  EI 61

[Close]

BLAST of Lag0019927 vs. NCBI nr
Match: KAG6576784.1 (hypothetical protein SDJN03_24358, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 35/66 (53.03%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 40  IKESGVGKLKHTYLDGVNGRSRRPMAWVGDLHCTLGRGARPRSAQSSRAYVIICVS---G 99
           IK +GV       LDGV GRSRR +AW GDLHCTLG GARP+ + S  A  +   S   G
Sbjct: 8   IKRNGVATDSSLTLDGVYGRSRRLIAWDGDLHCTLGGGARPKRSCSKFAERLRLSSQRGG 67

Query: 100 GLRSRG 103
           G R RG
Sbjct: 68  GHRMRG 73

The following BLAST results are available for this feature:

BLAST of Lag0019927 vs. NCBI nr


Match Name	E-value	Identity	Description
OEL21690.1	1.0e-06	53.23	hypothetical protein BAE44_0017291, partial [Dichanthelium oligosanthes]	[more]
KAG6576784.1	1.1e-05	53.03	hypothetical protein SDJN03_24358, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0019927 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019927.1	Lag0019927.1	mRNA