IVF0022470.2 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0022470.2
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr10: 13262057 .. 13262239 (-)
Sequence length	183
RNA-Seq Expression	IVF0022470.2
Synteny	IVF0022470.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGAGGTAGACCTCGTAAGCACCCTGATGCAAAAGCTAGTAACGCTGCTAGAGAAGCAGCGATGGGAAGTGGGGAATCTGATGTCGTATCTAGTCGCCCTCACGTTGAGAGGAACTTGGAAGAACAAATGCTTGATAGATTGGCTCAAAGATTAGTTTTGGGGATTATATCGACATAA

mRNA sequence

ATGCCTCGAGGTAGACCTCGTAAGCACCCTGATGCAAAAGCTAGTAACGCTGCTAGAGAAGCAGCGATGGGAAGTGGGGAATCTGATGTCGTATCTAGTCGCCCTCACGTTGAGAGGAACTTGGAAGAACAAATGCTTGATAGATTGGCTCAAAGATTAGTTTTGGGGATTATATCGACATAA

Coding sequence (CDS)

ATGCCTCGAGGTAGACCTCGTAAGCACCCTGATGCAAAAGCTAGTAACGCTGCTAGAGAAGCAGCGATGGGAAGTGGGGAATCTGATGTCGTATCTAGTCGCCCTCACGTTGAGAGGAACTTGGAAGAACAAATGCTTGATAGATTGGCTCAAAGATTAGTTTTGGGGATTATATCGACATAA

Protein sequence

MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIST

Homology

[Close]

BLAST of IVF0022470.2 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-17
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGI 58
          MP+GRPRKHPDA+ASNAAREAAMGSGESD  SSRPHVE N+EEQ+LDRLAQRL+LGI
Sbjct: 1  MPQGRPRKHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGI 57

[Close]

BLAST of IVF0022470.2 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-17
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 60
          MPRGRPRKHPDAK SNAAREAAMGSGESD  SSRPHVE N+EEQ+LDRLAQRL+ GI S
Sbjct: 20 MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRS 78

[Close]

BLAST of IVF0022470.2 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.2e-16
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 60
          MPRG+PRKHPDA+ASNAA+EAAMGSGESD  SSRP VE N+EEQ+LDRLAQRLV GI S
Sbjct: 1  MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 59

[Close]

BLAST of IVF0022470.2 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.2e-16
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 60
          MPRG+PRKHPDA+ASNAA+EAAMGSGESD  SSRP VE N+EEQ+LDRLAQRLV GI S
Sbjct: 1  MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 59

[Close]

BLAST of IVF0022470.2 vs. ExPASy TrEMBL
Match: A0A5A7T0V4 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00160 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1  MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 60
          MPRGRPRKHPDA+ASN ARE  +GSGESD  SSR HVE N+EEQ+LDRLAQ L   + S
Sbjct: 1  MPRGRPRKHPDAEASNVAREVTVGSGESDAESSRLHVEGNVEEQLLDRLAQGLCFTVTS 59

[Close]

BLAST of IVF0022470.2 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.56e-22
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 59
          MPRGRPRKHPDAK SNAAREAAMGSGESD  SSRPHVE N+EEQ+LDRLAQRL+ GI S
Sbjct: 20 MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRS 78

[Close]

BLAST of IVF0022470.2 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.11e-22
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGI 57
          MP+GRPRKHPDA+ASNAAREAAMGSGESD  SSRPHVE N+EEQ+LDRLAQRL+LGI
Sbjct: 1  MPQGRPRKHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGI 57

[Close]

BLAST of IVF0022470.2 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 6.53e-21
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 59
          MPRG+PRKHPDA+ASNAA+EAAMGSGESD  SSRP VE N+EEQ+LDRLAQRLV GI S
Sbjct: 1  MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 59

[Close]

BLAST of IVF0022470.2 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 6.53e-21
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 59
          MPRG+PRKHPDA+ASNAA+EAAMGSGESD  SSRP VE N+EEQ+LDRLAQRLV GI S
Sbjct: 1  MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 59

[Close]

BLAST of IVF0022470.2 vs. NCBI nr
Match: TYK13961.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.02e-16
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1  MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 59
          MPRGRPRKHPDA+ASN ARE  +GSGESD  SSR HVE N+EEQ+LDRLAQ L   + S
Sbjct: 1  MPRGRPRKHPDAEASNVAREVTVGSGESDAESSRLHVEGNVEEQLLDRLAQGLCFTVTS 59

The following BLAST results are available for this feature:

BLAST of IVF0022470.2 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0022470.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJ99	2.1e-17	85.96	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DES5	2.1e-17	84.75	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BB91	5.2e-16	81.36	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1M0	5.2e-16	81.36	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5A7T0V4	2.0e-12	71.19	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of IVF0022470.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035225.1	1.56e-22	84.75	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]
KAA0026280.1	2.11e-22	85.96	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D...	[more]
KAA0036813.1	6.53e-21	81.36	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYJ95881.1	6.53e-21	81.36	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
TYK13961.1	1.02e-16	71.19	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0022470.2 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0022470	IVF0022470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0022470.2-exon	IVF0022470.2-exon-chr10:13262057..13262239	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0022470.2-cds	IVF0022470.2-cds-chr10:13262057..13262239	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0022470.2	IVF0022470.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding