Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGAGGTAGACCTCGTAAGCACCCTGATGCAAAAGCTAGTAACGCTGCTAGAGAAGCAGCGATGGGAAGTGGGGAATCTGATGTCGTATCTAGTCGCCCTCACGTTGAGAGGAACTTGGAAGAACAAATGCTTGATAGATTGGCTCAAAGATTAGTTTTGGGGATTATATCGACATAA
mRNA sequence
ATGCCTCGAGGTAGACCTCGTAAGCACCCTGATGCAAAAGCTAGTAACGCTGCTAGAGAAGCAGCGATGGGAAGTGGGGAATCTGATGTCGTATCTAGTCGCCCTCACGTTGAGAGGAACTTGGAAGAACAAATGCTTGATAGATTGGCTCAAAGATTAGTTTTGGGGATTATATCGACATAA
Coding sequence (CDS)
ATGCCTCGAGGTAGACCTCGTAAGCACCCTGATGCAAAAGCTAGTAACGCTGCTAGAGAAGCAGCGATGGGAAGTGGGGAATCTGATGTCGTATCTAGTCGCCCTCACGTTGAGAGGAACTTGGAAGAACAAATGCTTGATAGATTGGCTCAAAGATTAGTTTTGGGGATTATATCGACATAA
Protein sequence
MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIST
Homology
BLAST of IVF0022470.2 vs. ExPASy TrEMBL
Match:
A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 2.1e-17
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0
Query: 1 MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGI 58
MP+GRPRKHPDA+ASNAAREAAMGSGESD SSRPHVE N+EEQ+LDRLAQRL+LGI
Sbjct: 1 MPQGRPRKHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGI 57
BLAST of IVF0022470.2 vs. ExPASy TrEMBL
Match:
A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 2.1e-17
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0
Query: 1 MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 60
MPRGRPRKHPDAK SNAAREAAMGSGESD SSRPHVE N+EEQ+LDRLAQRL+ GI S
Sbjct: 20 MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRS 78
BLAST of IVF0022470.2 vs. ExPASy TrEMBL
Match:
A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 5.2e-16
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0
Query: 1 MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 60
MPRG+PRKHPDA+ASNAA+EAAMGSGESD SSRP VE N+EEQ+LDRLAQRLV GI S
Sbjct: 1 MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 59
BLAST of IVF0022470.2 vs. ExPASy TrEMBL
Match:
A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 5.2e-16
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0
Query: 1 MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 60
MPRG+PRKHPDA+ASNAA+EAAMGSGESD SSRP VE N+EEQ+LDRLAQRLV GI S
Sbjct: 1 MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 59
BLAST of IVF0022470.2 vs. ExPASy TrEMBL
Match:
A0A5A7T0V4 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00160 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 0
Query: 1 MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 60
MPRGRPRKHPDA+ASN ARE +GSGESD SSR HVE N+EEQ+LDRLAQ L + S
Sbjct: 1 MPRGRPRKHPDAEASNVAREVTVGSGESDAESSRLHVEGNVEEQLLDRLAQGLCFTVTS 59
BLAST of IVF0022470.2 vs. NCBI nr
Match:
KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 99.8 bits (247), Expect = 1.56e-22
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0
Query: 1 MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 59
MPRGRPRKHPDAK SNAAREAAMGSGESD SSRPHVE N+EEQ+LDRLAQRL+ GI S
Sbjct: 20 MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRS 78
BLAST of IVF0022470.2 vs. NCBI nr
Match:
KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 99.4 bits (246), Expect = 2.11e-22
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0
Query: 1 MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGI 57
MP+GRPRKHPDA+ASNAAREAAMGSGESD SSRPHVE N+EEQ+LDRLAQRL+LGI
Sbjct: 1 MPQGRPRKHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGI 57
BLAST of IVF0022470.2 vs. NCBI nr
Match:
KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 95.1 bits (235), Expect = 6.53e-21
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0
Query: 1 MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 59
MPRG+PRKHPDA+ASNAA+EAAMGSGESD SSRP VE N+EEQ+LDRLAQRLV GI S
Sbjct: 1 MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 59
BLAST of IVF0022470.2 vs. NCBI nr
Match:
TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])
HSP 1 Score: 95.1 bits (235), Expect = 6.53e-21
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0
Query: 1 MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 59
MPRG+PRKHPDA+ASNAA+EAAMGSGESD SSRP VE N+EEQ+LDRLAQRLV GI S
Sbjct: 1 MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 59
BLAST of IVF0022470.2 vs. NCBI nr
Match:
TYK13961.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 83.2 bits (204), Expect = 1.02e-16
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 0
Query: 1 MPRGRPRKHPDAKASNAAREAAMGSGESDVVSSRPHVERNLEEQMLDRLAQRLVLGIIS 59
MPRGRPRKHPDA+ASN ARE +GSGESD SSR HVE N+EEQ+LDRLAQ L + S
Sbjct: 1 MPRGRPRKHPDAEASNVAREVTVGSGESDAESSRLHVEGNVEEQLLDRLAQGLCFTVTS 59
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SJ99 | 2.1e-17 | 85.96 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5D3DES5 | 2.1e-17 | 84.75 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5D3BB91 | 5.2e-16 | 81.36 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
A0A5A7T1M0 | 5.2e-16 | 81.36 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... | [more] |
A0A5A7T0V4 | 2.0e-12 | 71.19 | Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... | [more] |
Match Name | E-value | Identity | Description | |
KAA0035225.1 | 1.56e-22 | 84.75 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D... | [more] |
KAA0026280.1 | 2.11e-22 | 85.96 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D... | [more] |
KAA0036813.1 | 6.53e-21 | 81.36 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
TYJ95881.1 | 6.53e-21 | 81.36 | retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa] | [more] |
TYK13961.1 | 1.02e-16 | 71.19 | putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |