IVF0003926.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0003926.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr12: 23405887 .. 23406152 (+)
Sequence length	189
RNA-Seq Expression	IVF0003926.1
Synteny	IVF0003926.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAAGCAGCAAAGCCCCTTAGTGAATGAGAAAACAGTACGGAATTTGAAAAAGATGTTCTCTGACTGCGACTGTGACTTAGCAAACGTGTAATCTGTCACCGACCCAAACATTTCTCGCCACGTCTCCCCCTTTTCCTATACCCGACCCGATCCATTCTTCCCTCTTTACTGTCACCGTCTTCTTACGTCACCCTGATGTCTCTCTCTTTTCCGGACTTTAA

mRNA sequence

ATGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACAAACGTGTAATCTGTCACCGACCCAAACATTTCTCGCCACGTCTCCCCCTTTTCCTATACCCGACCCGATCCATTCTTCCCTCTTTACTGTCACCGTCTTCTTACGTCACCCTGATGTCTCTCTCTTTTCCGGACTTTAA

Coding sequence (CDS)

ATGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACAAACGTGTAATCTGTCACCGACCCAAACATTTCTCGCCACGTCTCCCCCTTTTCCTATACCCGACCCGATCCATTCTTCCCTCTTTACTGTCACCGTCTTCTTACGTCACCCTGATGTCTCTCTCTTTTCCGGACTTTAA

Protein sequence

MEHSIHRNGPNTFKAKQTCNLSPTQTFLATSPPFPIPDPIHSSLFTVTVFLRHPDVSLFSGL

Homology

[Close]

BLAST of IVF0003926.1 vs. ExPASy TrEMBL
Match: A0A0A0LU60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046320 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 38/77 (49.35%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 2  EHSIHRNGPNTFKAK-------QTCNLSP-----TQTFLAT----SPPFPIPDPIHSSLF 61
          EHSIHRNGPNTFKAK       +  + SP        FL +    S P   PDP   +LF
Sbjct: 4  EHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDP---TLF 63

Query: 62 TVTVFLRHPDVSLFSGL 63
          T+TVFLRHPDV+  S L
Sbjct: 64 TLTVFLRHPDVAHLSRL 77

[Close]

BLAST of IVF0003926.1 vs. NCBI nr
Match: KGN64337.1 (hypothetical protein Csa_013640 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 2.64e-07
Identity = 39/77 (50.65%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 2  EHSIHRNGPNTFKAKQT---CN----LSPT-----QTFLATSP----PFPIPDPIHSSLF 61
          EHSIHRNGPNTFKAK     C+     SP        FL +S     P   PDP   +LF
Sbjct: 4  EHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDP---TLF 63

The following BLAST results are available for this feature:

BLAST of IVF0003926.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003926.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU60	2.8e-04	49.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046320 PE=4 SV=1	[more]

BLAST of IVF0003926.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64337.1	2.64e-07	50.65	hypothetical protein Csa_013640 [Cucumis sativus]	[more]

BLAST of IVF0003926.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0003926	IVF0003926	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003926.1-exon	IVF0003926.1-exon-chr12:23405887..23405934	exon
IVF0003926.1-exon	IVF0003926.1-exon-chr12:23406012..23406152	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0003926.1-cds	IVF0003926.1-cds-chr12:23405887..23405934	CDS
IVF0003926.1-cds	IVF0003926.1-cds-chr12:23406012..23406152	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0003926.1	IVF0003926.1-protein	polypeptide