IVF0003926 (gene) Melon (IVF77) v1

Overview
NameIVF0003926
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr12: 23405887 .. 23406152 (+)
RNA-Seq ExpressionIVF0003926
SyntenyIVF0003926
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAAGCAGCAAAGCCCCTTAGTGAATGAGAAAACAGTACGGAATTTGAAAAAGATGTTCTCTGACTGCGACTGTGACTTAGCAAACGTGTAATCTGTCACCGACCCAAACATTTCTCGCCACGTCTCCCCCTTTTCCTATACCCGACCCGATCCATTCTTCCCTCTTTACTGTCACCGTCTTCTTACGTCACCCTGATGTCTCTCTCTTTTCCGGACTTTAA

mRNA sequence

ATGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACAAACGTGTAATCTGTCACCGACCCAAACATTTCTCGCCACGTCTCCCCCTTTTCCTATACCCGACCCGATCCATTCTTCCCTCTTTACTGTCACCGTCTTCTTACGTCACCCTGATGTCTCTCTCTTTTCCGGACTTTAA

Coding sequence (CDS)

ATGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACAAACGTGTAATCTGTCACCGACCCAAACATTTCTCGCCACGTCTCCCCCTTTTCCTATACCCGACCCGATCCATTCTTCCCTCTTTACTGTCACCGTCTTCTTACGTCACCCTGATGTCTCTCTCTTTTCCGGACTTTAA

Protein sequence

MEHSIHRNGPNTFKAKQTCNLSPTQTFLATSPPFPIPDPIHSSLFTVTVFLRHPDVSLFSGL
Homology
[Close]
BLAST of IVF0003926 vs. ExPASy TrEMBL
Match: A0A0A0LU60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046320 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 38/77 (49.35%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 2  EHSIHRNGPNTFKAK-------QTCNLSP-----TQTFLAT----SPPFPIPDPIHSSLF 61
          EHSIHRNGPNTFKAK       +  + SP        FL +    S P   PDP   +LF
Sbjct: 4  EHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDP---TLF 63

Query: 62 TVTVFLRHPDVSLFSGL 63
          T+TVFLRHPDV+  S L
Sbjct: 64 TLTVFLRHPDVAHLSRL 77

[Close]
BLAST of IVF0003926 vs. NCBI nr
Match: KGN64337.1 (hypothetical protein Csa_013640 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 2.64e-07
Identity = 39/77 (50.65%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 2  EHSIHRNGPNTFKAKQT---CN----LSPT-----QTFLATSP----PFPIPDPIHSSLF 61
          EHSIHRNGPNTFKAK     C+     SP        FL +S     P   PDP   +LF
Sbjct: 4  EHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDP---TLF 63

The following BLAST results are available for this feature:
BLAST of IVF0003926 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0003926 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU602.8e-0449.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046320 PE=4 SV=1[more]
BLAST of IVF0003926 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64337.12.64e-0750.65hypothetical protein Csa_013640 [Cucumis sativus][more]
BLAST of IVF0003926 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003926.1IVF0003926.1mRNA