Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTTGCCGAATCACCTTTGATACTGAGCGCCGCCACATCGTGTGCACGCGCCGCCATCTCCGCCGTCGTGAAAGTCCCAAGCCAAATCCGAGATTTCTTCCTCGGCTGCCGGATCTCCGACACCCATTTGCCCCAACTCCTCCTCCGTACGCCTCTGTAA
mRNA sequence
ATGGCTTTTGCCGAATCACCTTTGATACTGAGCGCCGCCACATCGTGTGCACGCGCCGCCATCTCCGCCGTCGTGAAAGTCCCAAGCCAAATCCGAGATTTCTTCCTCGGCTGCCGGATCTCCGACACCCATTTGCCCCAACTCCTCCTCCGTACGCCTCTGTAA
Coding sequence (CDS)
ATGGCTTTTGCCGAATCACCTTTGATACTGAGCGCCGCCACATCGTGTGCACGCGCCGCCATCTCCGCCGTCGTGAAAGTCCCAAGCCAAATCCGAGATTTCTTCCTCGGCTGCCGGATCTCCGACACCCATTTGCCCCAACTCCTCCTCCGTACGCCTCTGTAA
Protein sequence
MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTPL
Homology
BLAST of HG10002289.1 vs. NCBI nr
Match:
CAA2616491.1 (unnamed protein product [Spirodela intermedia] >CAA7391632.1 unnamed protein product [Spirodela intermedia])
HSP 1 Score: 80.9 bits (198), Expect = 3.8e-12
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0
Query: 4 AESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
A+ PLI+SAATSCARAAISAV KVPSQIRDFFLG RISDTH P L +RTP
Sbjct: 23 ADWPLIVSAATSCARAAISAVAKVPSQIRDFFLGSRISDTHFPHLRMRTP 72
BLAST of HG10002289.1 vs. NCBI nr
Match:
PPD82210.1 (hypothetical protein GOBAR_DD20833 [Gossypium barbadense])
HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0
Query: 1 MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
+ AE PLIL AATSCARAAIS V KVPSQ+RDF G RISDTHLPQLL+RTP
Sbjct: 47 LRMAELPLILKAATSCARAAISGVGKVPSQMRDFLRGSRISDTHLPQLLIRTP 99
BLAST of HG10002289.1 vs. NCBI nr
Match:
KAF5776266.1 (hypothetical protein HanXRQr2_Chr12g0522381 [Helianthus annuus])
HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0
Query: 1 MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTPL 55
+ A+ PL+ SAATSCARAAIS + KVPSQIRDFFLG RISDTHLP +RTPL
Sbjct: 20 LRMADFPLMESAATSCARAAISGLEKVPSQIRDFFLGSRISDTHLPHARIRTPL 73
BLAST of HG10002289.1 vs. NCBI nr
Match:
CAA7410804.1 (unnamed protein product [Spirodela intermedia])
HSP 1 Score: 75.1 bits (183), Expect = 2.1e-10
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0
Query: 3 FAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
+A SPLI+SAATS ARAAISAV KVPSQI DFFLG RISDTH PQ +RTP
Sbjct: 22 WAASPLIVSAATSWARAAISAVGKVPSQILDFFLGSRISDTHFPQFRIRTP 72
BLAST of HG10002289.1 vs. NCBI nr
Match:
VVV77779.1 (unnamed protein product, partial [Nymphaea colorata])
HSP 1 Score: 74.7 bits (182), Expect = 2.7e-10
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 0
Query: 4 AESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
A+ PLI+SAATSCARAAIS V VPSQI DF G RISDTHLPQLL+RTP
Sbjct: 70 ADWPLIVSAATSCARAAISGVGNVPSQILDFLRGSRISDTHLPQLLIRTP 119
BLAST of HG10002289.1 vs. ExPASy TrEMBL
Match:
A0A0A0L8D6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455120 PE=4 SV=1)
HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0
Query: 1 MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRT 53
MA AESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLL +
Sbjct: 1 MALAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLHS 52
BLAST of HG10002289.1 vs. ExPASy TrEMBL
Match:
A0A7I8K3J4 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002710 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0
Query: 4 AESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
A+ PLI+SAATSCARAAISAV KVPSQIRDFFLG RISDTH P L +RTP
Sbjct: 23 ADWPLIVSAATSCARAAISAVAKVPSQIRDFFLGSRISDTHFPHLRMRTP 72
BLAST of HG10002289.1 vs. ExPASy TrEMBL
Match:
A0A7C9DWE3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 3.5e-11
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0
Query: 1 MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
+ AESPL+L+AATSCARAAIS + KVPSQ+RDFF G RISDTH P L+RTP
Sbjct: 51 LRMAESPLMLNAATSCARAAISGLGKVPSQMRDFFRGSRISDTHFPHALIRTP 103
BLAST of HG10002289.1 vs. ExPASy TrEMBL
Match:
A0A1J3K9H9 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR23491_c0_g1_i1_g.68307 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 0
Query: 1 MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
+ AE PL+L AATSCAR AISAV KVPSQI DFF G RISDTH PQLL+RTP
Sbjct: 220 LRMAEVPLMLIAATSCARIAISAVGKVPSQILDFFRGSRISDTHFPQLLIRTP 272
BLAST of HG10002289.1 vs. ExPASy TrEMBL
Match:
A0A251SY65 (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0355091 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 5.9e-11
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0
Query: 1 MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTPL 55
+ A+ PL+ SAATSCARAAIS + KVPSQIRDFFLG RISDTHLP +RTPL
Sbjct: 20 LRMADFPLMESAATSCARAAISGLEKVPSQIRDFFLGSRISDTHLPHARIRTPL 73
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
CAA2616491.1 | 3.8e-12 | 82.00 | unnamed protein product [Spirodela intermedia] >CAA7391632.1 unnamed protein pro... | [more] |
PPD82210.1 | 1.1e-11 | 77.36 | hypothetical protein GOBAR_DD20833 [Gossypium barbadense] | [more] |
KAF5776266.1 | 1.2e-10 | 72.22 | hypothetical protein HanXRQr2_Chr12g0522381 [Helianthus annuus] | [more] |
CAA7410804.1 | 2.1e-10 | 78.43 | unnamed protein product [Spirodela intermedia] | [more] |
VVV77779.1 | 2.7e-10 | 78.00 | unnamed protein product, partial [Nymphaea colorata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L8D6 | 1.6e-16 | 94.23 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455120 PE=4 SV=1 | [more] |
A0A7I8K3J4 | 1.8e-12 | 82.00 | Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002710 PE=4 SV... | [more] |
A0A7C9DWE3 | 3.5e-11 | 71.70 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
A0A1J3K9H9 | 4.5e-11 | 75.47 | Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR234... | [more] |
A0A251SY65 | 5.9e-11 | 72.22 | Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0355091 PE... | [more] |
Match Name | E-value | Identity | Description | |