HG10002289.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002289.1
TypemRNA
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr11: 5204099 .. 5204263 (+)
Sequence length165
RNA-Seq ExpressionHG10002289.1
SyntenyHG10002289.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTTGCCGAATCACCTTTGATACTGAGCGCCGCCACATCGTGTGCACGCGCCGCCATCTCCGCCGTCGTGAAAGTCCCAAGCCAAATCCGAGATTTCTTCCTCGGCTGCCGGATCTCCGACACCCATTTGCCCCAACTCCTCCTCCGTACGCCTCTGTAA

mRNA sequence

ATGGCTTTTGCCGAATCACCTTTGATACTGAGCGCCGCCACATCGTGTGCACGCGCCGCCATCTCCGCCGTCGTGAAAGTCCCAAGCCAAATCCGAGATTTCTTCCTCGGCTGCCGGATCTCCGACACCCATTTGCCCCAACTCCTCCTCCGTACGCCTCTGTAA

Coding sequence (CDS)

ATGGCTTTTGCCGAATCACCTTTGATACTGAGCGCCGCCACATCGTGTGCACGCGCCGCCATCTCCGCCGTCGTGAAAGTCCCAAGCCAAATCCGAGATTTCTTCCTCGGCTGCCGGATCTCCGACACCCATTTGCCCCAACTCCTCCTCCGTACGCCTCTGTAA

Protein sequence

MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTPL
Homology
BLAST of HG10002289.1 vs. NCBI nr
Match: CAA2616491.1 (unnamed protein product [Spirodela intermedia] >CAA7391632.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 80.9 bits (198), Expect = 3.8e-12
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0

Query: 4  AESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
          A+ PLI+SAATSCARAAISAV KVPSQIRDFFLG RISDTH P L +RTP
Sbjct: 23 ADWPLIVSAATSCARAAISAVAKVPSQIRDFFLGSRISDTHFPHLRMRTP 72

BLAST of HG10002289.1 vs. NCBI nr
Match: PPD82210.1 (hypothetical protein GOBAR_DD20833 [Gossypium barbadense])

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
          +  AE PLIL AATSCARAAIS V KVPSQ+RDF  G RISDTHLPQLL+RTP
Sbjct: 47 LRMAELPLILKAATSCARAAISGVGKVPSQMRDFLRGSRISDTHLPQLLIRTP 99

BLAST of HG10002289.1 vs. NCBI nr
Match: KAF5776266.1 (hypothetical protein HanXRQr2_Chr12g0522381 [Helianthus annuus])

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 1  MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTPL 55
          +  A+ PL+ SAATSCARAAIS + KVPSQIRDFFLG RISDTHLP   +RTPL
Sbjct: 20 LRMADFPLMESAATSCARAAISGLEKVPSQIRDFFLGSRISDTHLPHARIRTPL 73

BLAST of HG10002289.1 vs. NCBI nr
Match: CAA7410804.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-10
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 3  FAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
          +A SPLI+SAATS ARAAISAV KVPSQI DFFLG RISDTH PQ  +RTP
Sbjct: 22 WAASPLIVSAATSWARAAISAVGKVPSQILDFFLGSRISDTHFPQFRIRTP 72

BLAST of HG10002289.1 vs. NCBI nr
Match: VVV77779.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 74.7 bits (182), Expect = 2.7e-10
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query: 4   AESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
           A+ PLI+SAATSCARAAIS V  VPSQI DF  G RISDTHLPQLL+RTP
Sbjct: 70  ADWPLIVSAATSCARAAISGVGNVPSQILDFLRGSRISDTHLPQLLIRTP 119

BLAST of HG10002289.1 vs. ExPASy TrEMBL
Match: A0A0A0L8D6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455120 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1  MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRT 53
          MA AESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLL +
Sbjct: 1  MALAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLHS 52

BLAST of HG10002289.1 vs. ExPASy TrEMBL
Match: A0A7I8K3J4 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002710 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0

Query: 4  AESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
          A+ PLI+SAATSCARAAISAV KVPSQIRDFFLG RISDTH P L +RTP
Sbjct: 23 ADWPLIVSAATSCARAAISAVAKVPSQIRDFFLGSRISDTHFPHLRMRTP 72

BLAST of HG10002289.1 vs. ExPASy TrEMBL
Match: A0A7C9DWE3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.5e-11
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1   MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
           +  AESPL+L+AATSCARAAIS + KVPSQ+RDFF G RISDTH P  L+RTP
Sbjct: 51  LRMAESPLMLNAATSCARAAISGLGKVPSQMRDFFRGSRISDTHFPHALIRTP 103

BLAST of HG10002289.1 vs. ExPASy TrEMBL
Match: A0A1J3K9H9 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR23491_c0_g1_i1_g.68307 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1   MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTP 54
           +  AE PL+L AATSCAR AISAV KVPSQI DFF G RISDTH PQLL+RTP
Sbjct: 220 LRMAEVPLMLIAATSCARIAISAVGKVPSQILDFFRGSRISDTHFPQLLIRTP 272

BLAST of HG10002289.1 vs. ExPASy TrEMBL
Match: A0A251SY65 (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0355091 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.9e-11
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 1  MAFAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLLRTPL 55
          +  A+ PL+ SAATSCARAAIS + KVPSQIRDFFLG RISDTHLP   +RTPL
Sbjct: 20 LRMADFPLMESAATSCARAAISGLEKVPSQIRDFFLGSRISDTHLPHARIRTPL 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAA2616491.13.8e-1282.00unnamed protein product [Spirodela intermedia] >CAA7391632.1 unnamed protein pro... [more]
PPD82210.11.1e-1177.36hypothetical protein GOBAR_DD20833 [Gossypium barbadense][more]
KAF5776266.11.2e-1072.22hypothetical protein HanXRQr2_Chr12g0522381 [Helianthus annuus][more]
CAA7410804.12.1e-1078.43unnamed protein product [Spirodela intermedia][more]
VVV77779.12.7e-1078.00unnamed protein product, partial [Nymphaea colorata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8D61.6e-1694.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455120 PE=4 SV=1[more]
A0A7I8K3J41.8e-1282.00Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002710 PE=4 SV... [more]
A0A7C9DWE33.5e-1171.70Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A1J3K9H94.5e-1175.47Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR234... [more]
A0A251SY655.9e-1172.22Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0355091 PE... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
HG10002289HG10002289gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
HG10002289.1-cdsHG10002289.1-cds-Chr11:5204099..5204263CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
HG10002289.1HG10002289.1-proteinpolypeptide