Cucsat.G2471.T4 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G2471.T4
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Squamosa promoter-binding-like protein
Location	ctg1002: 5536988 .. 5539539 (+)
RNA-Seq Expression	Cucsat.G2471.T4
Synteny	Cucsat.G2471.T4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAATTGCACCAAGAGGGTTAGAGATTCAAGTTCAAATCTCCATCTCCACCAAAGAATACTATAAATTCATTGGTAAGTTTTTTTTTAATAGTTTAATGAAGTGAATGATTGAATAAGACTCAAAAGAGAATCCTCCAAACTTAAAAAGCAATTCTTTAATTTTTGAAGAAGCAGCAACCACACAAGTGAAAGAAAAGAATAGCACTTGGACAAGGACACCAAATATATAGAAATATATACAATTAATCATTAATTAATGGATTAAATTAATTATATAAGGTTGAACTTTTTAATATATGTGTGTCTTTTAATTTTTTCTTTTTTTTTTTTTTTTTGGTAAGAAATAGAAAAAGTATTTAATAGATTTTTAAACATCTAATTTTCTAACCAAATATACTGAGGTATATATTTGTTCAAAAGAAATTGAAAGACTAGAAACCTATTATAGTAAAAAAAGAAAAAGCAAAGAAAAAAAAATACAAGGTGTGGTCTCTTTCATTCACTTTCATTTCCATTATAGTTTATATTATATATATAGTCATGTGGTTCTTCTAACTTGTTCTACACATATAAGACTTCTCTTAGAAAATGGCAAACTCAGAAGATCAAGGTTGGGAGGACATGATTGTAGATGATGACGACGACGATAACGACAACGAAGAAATAGGGTTTGTAGATAATGAGAGGAGGAGGAGATCTGGTTTAACCAGTGCTCGGGGTGGTGGCGGAGGGGGAAGGTCAACGGTGGCACGTTGCCAAGCCGATGGCTGCAATGCTGATCTGACCGGTGCAAAACCGTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAGGGCGGCTGTGGTGATTCTGGCCGGATTGGAACAGCGATTTTGCCAGCAGTGTAGTAGGTAAGAAAGAAAGCTTCCTCTTTTTTTTTTTTCTCTCAAATAATTTTTTTTAAGAAAACCCTAATCTGGATCTCTTAAATTAGTATTGTTTTTTTAATCTTTATCAAAATGTTTCACTATTTATGGAATAAATCTAATATTCAAGTATTCTATTAAGGGGGAAGACATTTTAATTTCCATTTATACACTAAAGTGTTGAGTCAATTCTTTTTTGAATTTTCTATTGAACATGAAACATGTATAATTTAATATTATCTTTTTTGAAAAAAAAAAAGTTGTGTTTAATGGTGATTATGTCACCCAAATGGTTTTATTACCTATAGTAATTACTTTTCAATCAAGATAGTAAAATGCCCATTAATATAATAGTTATTGACTATCAATTTTATTTTTTTTAAAAAAGATTGACCTTCATTTTTAAGGTCTGAAGTTTTAACAAAGTACTGTTATATTATATATTCTTAATGGTTAATTAAGTTTGTTTAAATTAAAGTTGGTAAATTTGGATTTTTTTTTCCCTCTTGAATAGAGATTGAAAGGTTTTACATTATTGTTAAGACTAAATGAATCAATTTTAGTTGTAATAACTTTTAAATTCAAGTGGGTTTGAGTGAGTGATACAATTAATGCTATATTCTCACAGTGATTTTAAAGCTTTCGCTTTCTTAAAATTAGAGAACAATTGTGACATAGGGTTTTGTGTGATTGGTGAGGAACTATTCATTTTAGTGTTAACACTTTTAATTATGTTGGATACTTAAAATAGTTTGCTTCACAATAGAGTTAATTTAGTGGTCGAAAATATATTTGTTGGAAATTATTAGAATGTGAATAGGGTAGTTTTAATATAGTGACATTTTTTTTGAAATTATTATAAAAATAGAGGAAAATCTATTAAAATTTATTTTTGGCAAATAGTTCTACTTTTTTATTTTCTGTGATGTGCATATGAATTTCTCACTAGCTGTAGCCTATAACAATAATGGTGGAAAAATAAATTAGAGGGAAGTAAAATTGAAAATATGAAAGGGTGTGGAGGATTATATTAAATACGCATTAAATGTGAATTAAATATATTAGATGGGAATGGAAAAGGGAGATGGTTTAGTTGTATTATGATGACAGGTTTCATGCATTATCGGAATTCGATGACACAAAGAGAAGCTGCCGGATGCGTTTGGCTGGTCACAATGAACGCCGCCGTAAAATCTTACCGGATTTTCATGGCCAATCCTCCACTAATTGAACCACACACACTCTCACTGTGTCCACTAATTACCTAATTAATAATAAATAACAATAATGATACACTCATTACTAATGAAGAATAAGAAGAAGAAGAAGAAGAAAAGAAGAAAGAGCTGCTCGTTATTGGAGTTAATTTTGTGTTGAGAGAGAGTCACAGGTCATTCTGGTTATTCTGGTCACCAGTCACCGGCGGCCACCGTGATGAAAAATGAATTTTTATGCTTTCTCTCTTCTGTCATCAAAAGAAAACCCAATTTATAGCCCTCTTTGTAATCATAATAATAATAAGTAAATAGATAACAAAGAGATGATCAGATGGTTTATGGTACTTTTTGCCTCAGTCACATATCACTAAAATCTGTGTGGGATATCTTTCTTTCTTTTTCTTTAACATTGTAGCTGTAGGTTA

Coding sequence (CDS)

ATGGCAAACTCAGAAGATCAAGGTTGGGAGGACATGATTGTAGATGATGACGACGACGATAACGACAACGAAGAAATAGGGTTTGTAGATAATGAGAGGAGGAGGAGATCTGGTTTAACCAGTGCTCGGGGTGGTGGCGGAGGGGGAAGGTCAACGGTGGCACGTTGCCAAGCCGATGGCTGCAATGCTGATCTGACCGGTGCAAAACCGTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAGGGCGGCTGTGGTGATTCTGGCCGGATTGGAACAGCGATTTTGCCAGCAGTGTAGTAGGTTTCATGCATTATCGGAATTCGATGACACAAAGAGAAGCTGCCGGATGCGTTTGGCTGGTCACAATGAACGCCGCCGTAAAATCTTACCGGATTTTCATGGCCAATCCTCCACTAATTGA

Protein sequence

MANSEDQGWEDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQADGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMRLAGHNERRRKILPDFHGQSSTN

Homology

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BLAST of Cucsat.G2471.T4 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.1e-29
Identity = 70/135 (51.85%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 1   MANSEDQGWEDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQADG 60
           +  S++QG E     +DD   D+++   +    +R SG            ST   CQ + 
Sbjct: 14  LPGSQEQGEE-----EDDIGEDSKKTRALTPSGKRASG------------STQRSCQVEN 73

Query: 61  CNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMRL 120
           C A++T AKPYHRRHKVCEFH++A VV+ +GL+QRFCQQCSRFH LSEFD+ KRSCR RL
Sbjct: 74  CAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQQCSRFHELSEFDEAKRSCRRRL 131

Query: 121 AGHNERRRKILPDFH 136
           AGHNERRRK   D H
Sbjct: 134 AGHNERRRKSSHDTH 131

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BLAST of Cucsat.G2471.T4 vs. ExPASy Swiss-Prot
Match: Q0E3F8 (Squamosa promoter-binding-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL5 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-28
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 55  RCQADGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKR 114
           RCQA+GC ADL+ AK YHRRHKVC+FH++AA V+ AG +QRFCQQCSRFH L+EFD+ KR
Sbjct: 206 RCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDEAKR 265

Query: 115 SCRMRLAGHNERRRKILPDFHGQSS 140
           SCR RL  HN RRRK  P   GQSS
Sbjct: 266 SCRKRLTEHNRRRRK--PTAGGQSS 288

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BLAST of Cucsat.G2471.T4 vs. ExPASy Swiss-Prot
Match: A2YFT9 (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica OX=39946 GN=SPL10 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 45  GGGGGRSTVARCQADGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFH 104
           G GG      RCQA+GC ADL+GAK YHRRHKVCE+H++A+VV  +G +QRFCQQCSRFH
Sbjct: 170 GFGGAHHQPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFH 229

Query: 105 ALSEFDDTKRSCRMRLAGHNERRRK 130
            L+EFD+ KRSCR RLA HN RRRK
Sbjct: 230 VLTEFDEAKRSCRKRLAEHNRRRRK 254

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BLAST of Cucsat.G2471.T4 vs. ExPASy Swiss-Prot
Match: Q0DAE8 (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL10 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 45  GGGGGRSTVARCQADGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFH 104
           G GG      RCQA+GC ADL+GAK YHRRHKVCE+H++A+VV  +G +QRFCQQCSRFH
Sbjct: 170 GFGGAHHQPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFH 229

Query: 105 ALSEFDDTKRSCRMRLAGHNERRRK 130
            L+EFD+ KRSCR RLA HN RRRK
Sbjct: 230 VLTEFDEAKRSCRKRLAEHNRRRRK 254

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BLAST of Cucsat.G2471.T4 vs. ExPASy Swiss-Prot
Match: Q8GXL3 (Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=SPL8 PE=1 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-28
Identity = 64/97 (65.98%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 33  RRRRSGLTSARGGGGGGRSTVARCQADGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGL 92
           RR R G       G     +  RCQA+GCNADL+ AK YHRRHKVCEFHS+A+ V+ AGL
Sbjct: 170 RRSRPG-----ESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGL 229

Query: 93  EQRFCQQCSRFHALSEFDDTKRSCRMRLAGHNERRRK 130
            QRFCQQCSRFH LSEFD+ KRSCR RLA HN RRRK
Sbjct: 230 SQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK 261

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BLAST of Cucsat.G2471.T4 vs. NCBI nr
Match: XP_004134953.1 (squamosa promoter-binding protein 1 [Cucumis sativus] >KGN49239.1 hypothetical protein Csa_003123 [Cucumis sativus])

HSP 1 Score: 285 bits (730), Expect = 4.10e-97
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MANSEDQGWEDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQADG 60
           MANSEDQGWEDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQADG
Sbjct: 1   MANSEDQGWEDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQADG 60

Query: 61  CNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMRL 120
           CNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMRL
Sbjct: 61  CNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMRL 120

Query: 121 AGHNERRRKILPDFHGQSSTN 141
           AGHNERRRKILPDFHGQSSTN
Sbjct: 121 AGHNERRRKILPDFHGQSSTN 141

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BLAST of Cucsat.G2471.T4 vs. NCBI nr
Match: XP_008439842.1 (PREDICTED: squamosa promoter-binding protein 1 [Cucumis melo])

HSP 1 Score: 261 bits (667), Expect = 1.72e-87
Identity = 128/142 (90.14%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MANSEDQGWEDMIVDDDDDD-NDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQAD 60
           MANS D  WEDMI+DDDDDD ND EE+GFVDNERRRRSGLT+ RGGGGGGRSTVARCQAD
Sbjct: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60

Query: 61  GCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMR 120
           GCNADLTGA+PYHRRHKVCEFH++AAVVILAGLEQRFCQQCSRFHA+SEFDDTKRSCR R
Sbjct: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSR 120

Query: 121 LAGHNERRRKILPDFHGQSSTN 141
           LAGHNERRRKILPDFHGQSSTN
Sbjct: 121 LAGHNERRRKILPDFHGQSSTN 142

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BLAST of Cucsat.G2471.T4 vs. NCBI nr
Match: XP_038880830.1 (squamosa promoter-binding protein 1-like [Benincasa hispida])

HSP 1 Score: 248 bits (632), Expect = 3.62e-82
Identity = 120/141 (85.11%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 1   MANSEDQGWEDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQADG 60
           M NSEDQ WEDM+V++DDD++DNEEIGFV++ERRRRS LT  RGG GGGR TVARCQADG
Sbjct: 1   MTNSEDQVWEDMVVEEDDDNDDNEEIGFVEDERRRRSALTGGRGGSGGGRVTVARCQADG 60

Query: 61  CNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMRL 120
           CNADL+ A+PYHRRHKVCEFH++AAVVILAGLEQRFCQQCSRFHA+SEFDDTKRSCR RL
Sbjct: 61  CNADLSCARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRL 120

Query: 121 AGHNERRRKILPDFHGQSSTN 141
           AGHNERRRKILPDFHGQSSTN
Sbjct: 121 AGHNERRRKILPDFHGQSSTN 141

[Close]

BLAST of Cucsat.G2471.T4 vs. NCBI nr
Match: XP_023004048.1 (squamosa promoter-binding-like protein 3 [Cucurbita maxima])

HSP 1 Score: 203 bits (517), Expect = 1.21e-64
Identity = 99/142 (69.72%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MANSEDQGWEDMIVDDDDDD--NDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQA 60
           M NS DQGW D + ++++++  +D++E+GFV++ER++R+ ++S+R G GGGR++VARCQA
Sbjct: 1   MENSGDQGWGDPVEEEEEEEEEDDDDEVGFVEDERKKRA-VSSSRSGSGGGRTSVARCQA 60

Query: 61  DGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRM 120
           D CN DL GA+ YHRRHKVCEFHS+AAVVILAGLEQRFCQQCSRFH++SEFD+TKRSCR 
Sbjct: 61  DSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRR 120

Query: 121 RLAGHNERRRKILPDFHGQSST 140
           RLAGHNERRRK LPDF GQSST
Sbjct: 121 RLAGHNERRRKNLPDFQGQSST 141

[Close]

BLAST of Cucsat.G2471.T4 vs. NCBI nr
Match: KAG7026565.1 (Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199 bits (506), Expect = 6.14e-63
Identity = 100/144 (69.44%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 1   MANSEDQGW----EDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARC 60
           M +S DQGW    E+   +++DDD+D++EIGFV +ER++R+  + +R G GGGR++V RC
Sbjct: 1   MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRA-ASGSRSGSGGGRTSVPRC 60

Query: 61  QADGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSC 120
           QAD CN DL GA+ YHRRHKVCEFHS+AAVVILAGLEQRFCQQCSRFH++SEFD+TKRSC
Sbjct: 61  QADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSC 120

Query: 121 RMRLAGHNERRRKILPDFHGQSST 140
           R RLAGHNERRRK LPDF GQSST
Sbjct: 121 RRRLAGHNERRRKNLPDFQGQSST 143

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BLAST of Cucsat.G2471.T4 vs. ExPASy TrEMBL
Match: A0A0A0KK74 (SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517960 PE=4 SV=1)

HSP 1 Score: 285 bits (730), Expect = 1.98e-97
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MANSEDQGWEDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQADG 60
           MANSEDQGWEDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQADG
Sbjct: 1   MANSEDQGWEDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQADG 60

Query: 61  CNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMRL 120
           CNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMRL
Sbjct: 61  CNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMRL 120

Query: 121 AGHNERRRKILPDFHGQSSTN 141
           AGHNERRRKILPDFHGQSSTN
Sbjct: 121 AGHNERRRKILPDFHGQSSTN 141

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BLAST of Cucsat.G2471.T4 vs. ExPASy TrEMBL
Match: A0A1S3AZN8 (squamosa promoter-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103484510 PE=4 SV=1)

HSP 1 Score: 261 bits (667), Expect = 8.33e-88
Identity = 128/142 (90.14%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MANSEDQGWEDMIVDDDDDD-NDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQAD 60
           MANS D  WEDMI+DDDDDD ND EE+GFVDNERRRRSGLT+ RGGGGGGRSTVARCQAD
Sbjct: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60

Query: 61  GCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMR 120
           GCNADLTGA+PYHRRHKVCEFH++AAVVILAGLEQRFCQQCSRFHA+SEFDDTKRSCR R
Sbjct: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSR 120

Query: 121 LAGHNERRRKILPDFHGQSSTN 141
           LAGHNERRRKILPDFHGQSSTN
Sbjct: 121 LAGHNERRRKILPDFHGQSSTN 142

[Close]

BLAST of Cucsat.G2471.T4 vs. ExPASy TrEMBL
Match: A0A6J1KYC6 (Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC111497471 PE=4 SV=1)

HSP 1 Score: 203 bits (517), Expect = 5.88e-65
Identity = 99/142 (69.72%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MANSEDQGWEDMIVDDDDDD--NDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQA 60
           M NS DQGW D + ++++++  +D++E+GFV++ER++R+ ++S+R G GGGR++VARCQA
Sbjct: 1   MENSGDQGWGDPVEEEEEEEEEDDDDEVGFVEDERKKRA-VSSSRSGSGGGRTSVARCQA 60

Query: 61  DGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRM 120
           D CN DL GA+ YHRRHKVCEFHS+AAVVILAGLEQRFCQQCSRFH++SEFD+TKRSCR 
Sbjct: 61  DSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRR 120

Query: 121 RLAGHNERRRKILPDFHGQSST 140
           RLAGHNERRRK LPDF GQSST
Sbjct: 121 RLAGHNERRRKNLPDFQGQSST 141

[Close]

BLAST of Cucsat.G2471.T4 vs. ExPASy TrEMBL
Match: A0A6J1EFR3 (Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC111433770 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 4.91e-62
Identity = 98/144 (68.06%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 1   MANSEDQGW----EDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARC 60
           M +S DQGW    E+   +++++D+D++EIGFV +ER++R+  + +R G GGGR++V RC
Sbjct: 1   MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRA-ASGSRSGSGGGRTSVPRC 60

Query: 61  QADGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSC 120
           QAD CN DL GA+ YHRRHKVCEFHS+AAVVILAGLEQRFCQQCSRFH++SEFD+TKRSC
Sbjct: 61  QADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSC 120

Query: 121 RMRLAGHNERRRKILPDFHGQSST 140
           R RLAGHNERRRK LPDF GQSST
Sbjct: 121 RRRLAGHNERRRKNLPDFQGQSST 143

[Close]

BLAST of Cucsat.G2471.T4 vs. ExPASy TrEMBL
Match: A0A5A7UDV9 (Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007580 PE=4 SV=1)

HSP 1 Score: 185 bits (470), Expect = 2.51e-58
Identity = 91/103 (88.35%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MANSEDQGWEDMIVDDDDDD-NDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQAD 60
           MANS D  WEDMI+DDDDDD ND EE+GFVDNERRRRSGLT+ RGGGGGGRSTVARCQAD
Sbjct: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60

Query: 61  GCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSR 102
           GCNADLTGA+PYHRRHKVCEFH++AAVVILAGLEQRFCQQCSR
Sbjct: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR 103

[Close]

BLAST of Cucsat.G2471.T4 vs. TAIR 10
Match: AT1G02065.1 (squamosa promoter binding protein-like 8 )

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-29
Identity = 64/97 (65.98%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 33  RRRRSGLTSARGGGGGGRSTVARCQADGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGL 92
           RR R G       G     +  RCQA+GCNADL+ AK YHRRHKVCEFHS+A+ V+ AGL
Sbjct: 170 RRSRPG-----ESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGL 229

Query: 93  EQRFCQQCSRFHALSEFDDTKRSCRMRLAGHNERRRK 130
            QRFCQQCSRFH LSEFD+ KRSCR RLA HN RRRK
Sbjct: 230 SQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK 261

[Close]

BLAST of Cucsat.G2471.T4 vs. TAIR 10
Match: AT3G60030.1 (squamosa promoter-binding protein-like 12 )

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-29
Identity = 58/95 (61.05%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 46  GGGGRSTVARCQADGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHA 105
           GGG  S    CQ D C ADL+  K YHRRHKVCE HS+A   ++ G+ QRFCQQCSRFH 
Sbjct: 117 GGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHV 176

Query: 106 LSEFDDTKRSCRMRLAGHNERRRKILPDFHGQSST 141
           L EFD+ KRSCR RLAGHN+RRRK  PD  G  ++
Sbjct: 177 LEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNGTS 211

[Close]

BLAST of Cucsat.G2471.T4 vs. TAIR 10
Match: AT2G42200.1 (squamosa promoter binding protein-like 9 )

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-28
Identity = 58/90 (64.44%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 43  RGGGGGGRSTVARCQADGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSR 102
           RGGG G    + RCQ +GC  DLT AK Y+ RH+VC  HS+   V +AG+EQRFCQQCSR
Sbjct: 61  RGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSR 120

Query: 103 FHALSEFDDTKRSCRMRLAGHNERRRKILP 133
           FH L EFD  KRSCR RLAGHNERRRK  P
Sbjct: 121 FHQLPEFDLEKRSCRRRLAGHNERRRKPQP 150

[Close]

BLAST of Cucsat.G2471.T4 vs. TAIR 10
Match: AT1G76580.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein )

HSP 1 Score: 122.5 bits (306), Expect = 2.8e-28
Identity = 60/105 (57.14%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 29  VDNERRRRSGLTSARGGGGGGRSTVARCQADGCNADLTGAKPYHRRHKVCEFHSRAAVVI 88
           VD  R  +   + + G GGGG     +CQ D C  DL+ AK YHRRHKVCE HS+A   +
Sbjct: 55  VDLTRPSKKVRSGSPGSGGGGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKAL 114

Query: 89  LAGLEQRFCQQCSRFHALSEFDDTKRSCRMRLAGHNERRRKILPD 134
           +    QRFCQQCSRFH LSEFD+ KRSCR RL GHN RRRK  PD
Sbjct: 115 VGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRRRKTQPD 159

[Close]

BLAST of Cucsat.G2471.T4 vs. TAIR 10
Match: AT1G69170.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein )

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-27
Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 14  VDDDDDDNDNEEIGF-VDNERRRRSGLTSARGGGGGGRSTVARCQADGCNADLTGAKPYH 73
           +D  +DD+D    GF + +++ R S L S              CQ  GC+ DL+ +K YH
Sbjct: 91  LDLGNDDDDTSSRGFALPSKKSRASNLCSQN----------PLCQVYGCSKDLSSSKDYH 150

Query: 74  RRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMRLAGHNERRRK 130
           +RH+VCE HS+ +VVI+ GLEQRFCQQCSRFH LSEFDD KRSCR RLAGHNERRRK
Sbjct: 151 KRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRK 197

The following BLAST results are available for this feature:

BLAST of Cucsat.G2471.T4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38741	4.1e-29	51.85	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
Q0E3F8	1.2e-28	69.41	Squamosa promoter-binding-like protein 5 OS=Oryza sativa subsp. japonica OX=3994...	[more]
A2YFT9	1.6e-28	68.24	Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica OX=39946...	[more]
Q0DAE8	1.6e-28	68.24	Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q8GXL3	2.7e-28	65.98	Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=SPL8...	[more]

BLAST of Cucsat.G2471.T4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134953.1	4.10e-97	100.00	squamosa promoter-binding protein 1 [Cucumis sativus] >KGN49239.1 hypothetical p...	[more]
XP_008439842.1	1.72e-87	90.14	PREDICTED: squamosa promoter-binding protein 1 [Cucumis melo]	[more]
XP_038880830.1	3.62e-82	85.11	squamosa promoter-binding protein 1-like [Benincasa hispida]	[more]
XP_023004048.1	1.21e-64	69.72	squamosa promoter-binding-like protein 3 [Cucurbita maxima]	[more]
KAG7026565.1	6.14e-63	69.44	Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argy...	[more]

BLAST of Cucsat.G2471.T4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK74	1.98e-97	100.00	SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517960 PE...	[more]
A0A1S3AZN8	8.33e-88	90.14	squamosa promoter-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103484510 PE=4...	[more]
A0A6J1KYC6	5.88e-65	69.72	Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC1114974...	[more]
A0A6J1EFR3	4.91e-62	68.06	Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A5A7UDV9	2.51e-58	88.35	Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Cucsat.G2471.T4 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02065.1	1.9e-29	65.98	squamosa promoter binding protein-like 8	[more]
AT3G60030.1	2.5e-29	61.05	squamosa promoter-binding protein-like 12	[more]
AT2G42200.1	2.1e-28	64.44	squamosa promoter binding protein-like 9	[more]
AT1G76580.1	2.8e-28	57.14	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]
AT1G69170.1	1.8e-27	55.56	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 56..129 e-value: 4.6E-33 score: 113.4
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 53..130 score: 31.820858
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 46..117 e-value: 3.4E-34 score: 118.8
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 54..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..26
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 41..131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G2471	Cucsat.G2471	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G2471.T4.E1	Cucsat.G2471.T4.E1	exon
Cucsat.G2471.T4.E2	Cucsat.G2471.T4.E2	exon
Cucsat.G2471.T4.E3	Cucsat.G2471.T4.E3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G2471.T4.C1	Cucsat.G2471.T4.C1	CDS
Cucsat.G2471.T4.C2	Cucsat.G2471.T4.C2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G2471.T4	Cucsat.G2471.T4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009908	flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046872	metal ion binding