Cucsat.G16670.T6 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16670.T6
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	U1 small nuclear ribonucleoprotein A
Location	ctg24: 2497930 .. 2503330 (+)
RNA-Seq Expression	Cucsat.G16670.T6
Synteny	Cucsat.G16670.T6

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCACTGTCGGACCGGCCAGACCTCTTGCGAGCGGAGTGGCATTGCATGTATCGGACCGAGACCTCGTTTCTCCGCTTTTCCATTTGAGCATTTCTATTCTACGGACAGAGGTGAAAGAAATGGCGGAGGTCACCACCACTGGCAACGAAGTTCCTCCCAACATGACCATATACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGGTATTATTGAGTGGAGCAGCGGGATATGTAAACTTCTTTAATGCTCTGAATTATGTTATGATTATTTTATTTTTTTTCCTCCTTGGTGGAGCAGAGCTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGACAGGCTTGGGTTGTGTTCGAAGAAGTATCTTCTGCGACTAATGCGCTTAGACAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTAATGTGCTTGCTTTTTTTTTTTTTTTTCTTTTTCCAATTTCTAGAATTTTAATTTCTTTTTGCTAAATTCAGGGTGAAGATGAAGGGCTAGACTTGAACCTTACTGGAAAAAGATCTTTATTATTCGTATGAGCACTTGTGCTAATTAAAGCGATAGTGACGAATTAGAAAGTGCCGATGTATTCTTCTGAGCAACTAATAGGAATTGTCTTTAGATTATGTTTCATCTTGTTTTAAAAAAGTTGAGATTTACTTACACATGGCTGTTAAATAATCTGGTTCATTGCCTAACTGATGTTCTGATCTACATATAATATACAATGAATTTTCATAGCTGATATTATTCCGGAGAGGTTCAAGAACAACTATTGTTTGAATGATCAACCATGTAATAGAATAAGCTCTGAGCAGTTGATCTTGAAGTGTTTACTTCTTCAATATATCACATTGCAGGCGTTTGAATTTACTTCACCTAAGCTTTATGACATTGGTTCTTATCAGTTTGACGCACATCAAGTGGTTGTCTAACATGGCTTCTGCAAATCTTTTGAAAATTTTATATCTGTTTAGCATTTCTTGTTTGTAGATCTGGTGGCTAATTTCCATATTTTCTTTGTGTTTATGAAAATTCTATATCTGTTTAGCATTTCAGATGGCTTTTTATATTATTTATTGCTCTGTTCTATCATTCATCTTTTGTTAGCTGGACAAAGCTTTTTTGTGGGAGTATGGTGCAATATGAAGCTAAGTGATGTTGTTTTGCAATCTTGTAGAGAATACAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGACGGTTCATTTGTTCCTCGGGAGAAGCGAAAGAGGCACGAGGAAAAGGGTATAGTTTGTCTTTCTTTTCTATTTGACAGTTCAAATTTGAATATGTTTGAACAGTTCGGTACATGAAGATTTGTATCAGCATTTCATCCGATAACTTGATAGGAACTCCCTTAGGTATATTAGTCAATAGCTAGGAGAGTTTGTTATGAAATGTGGTTATAAATGAAGGTTAAGGGAATGAGATAGGCAAGCAATGTTTTAGTGACTGGTTTTGGGGTCAGAGAGTTATCGGGAGTGGGAGGGACCAACTTGCAAGTACCTTGAACATTTGTCTTATTTTGTAATTTCGTTCTCTTACCTTATTATTTATGTAACCTTATTTTCTCAAGATTTATTCATTTTCTTGATGTGGCAGGGAGGAAGAAGAAAGAGCAGCATGATGCGAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTGCTGGAGCATATGGTGCAACAGCGGTAAGTATCTCTGTTTAATTCCTAAGCATTAGTTTTTGGAATATTCTATTATTTGCATTCCATTGCATAGTGGTCTTCCATAATATTTCCATCCCTAACTTCAGATTTGAGACTTAGATTGATTCTCCAACGAAGCCACTTAAGATGTTATTTGTTTCTCTGTGGTTAAAAAATGCATTCTAAGTGCTTCATTGACATGATTGTAATTCTAAAGTATAAGATCATAAAGAACAAGAAGTGGAATATAAAGAGACAGAACTTCACTTCTTGAGGCCAATTTTGCTTATTAAGAATGATGCTCTCTCATTATTTCTCATTTCTCACCCTTTTCATTAATTTGTATGGTACTCTGTGAAATAGGGAGCACATCATTTTTTTACTCCCTCCCACGTAGTGAGTCCATTGTCAATTTCAGTAATTCTTTTGAATTTTATCTGCCTTTTTAGTTTATTGCGCAGAGAAAAGCATATATATAGAAAAAGATAATAAAAAACGTATATTGGGGTTTATTTGCATTTATTACTTTGGTCATTTTGTATATCATGATTGTTAAAGAACCCTTTGCCATGGTTCAACACTTTAATTTCTAGGACTTGGTGGCTGGTGTCTGCATCTGCATGAGTGGATGTACTCTTATATGCCTTTTATCTATTGACTAAGCATTTTAAGGTGGCATGTCTTTGTTGACTTTCATCATTTGAATAATTTGTGTACTGAATTATGTTTATTAATTGGAAAGTATTGATTGCTAACGAACACTCTCTCCTTTCCCTCTTCTGAAAATGGTGCAGCACTCTCAAGTACCTTATTCAGGTGGAGTTATGGTACCGGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTGTACAAAATCTACCACACGAGACCACTCCAATGATGCTACAAATGCTTTTCTGTCAATATCCTGGTTTCAAGGAGGTTCGAATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAATACAGTGATGAGGTACAATCAACAGTCGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCACAAAATTCGATGTTGATAACCTATGCGAAGAAATAGGATAGAGTGAAACTTGGCCGAAAGCCACCTGCTATTATTCAATGCTTAGTACAGGAGATTGTTTGTAGAATACTGTCATCTCGTACTTGCTGGAAATTCTACCCCACCGCAACCTAATTAATACAATCAGATCAGTTCTCTTAAGCAGGAATAGAAGAGATCTTCAGATCCCGGTTACCATGATTATCATTGAACTTATAGTAAAGTTTGATTTCATCATCCCATTTTGTTCTCATTTTCATAGTAGTGTATTTCCTTCTAATTGTGCTGTAAAATAGACTAAAAACTTTCATAACTGAGCTATTGAAGAGGTAATGATGTTGAGACCTAATTTGATAGACTTTATTTTAGTGAACAGCCAAGTTCTACTTCTACAGGACACAACAATTCCAAAATGCAAGCAAAATGAGATCCTGCTGCAGCGTTGAGAGAGATATCCCCAGTAAGTACAGCTTAATTCTTGAACTAGATTTTGTCTAATATCTCCATTACTTTTACTGGCATAGCGAATTCGAGTCTAATTGATATTGTAGACTATATATTCACTATATTATATCTGAGACTGAAAACTGGTTGGAAGAAAAAAGTATTTATGAACACAATAGTTAAAAACTTTTAGGGGGGGCTTCATTAGGGAACAACTGCTCCATCTTCAAGAATCTTGAGCTTCAAGGGAATATTGTGCTAATCTGAATTTGAACGTTGCGTTGTGAAGTGTCAAGTGAAGTTAAACAGATGCCAAGTTGAGGCTCTATACTAGACTTTGACTTTATATTTGGGTTAAGGAGTTTATTTATCTTAAAATTCTGATTTCATTTTGAGTAGGAATTTCTCATTTTTAGATTATGAACACAATATATTGACAAAATATGGCCAAATAAGAAAGGAAAGAAAACCTCTATAAATTTATAGAGAATCGCCTCTAATTAAGTTGCATAAAAGCAATTTTGAGCTTGATAAGAAATAAAACCTTGCAGTTCTCATCTACTCGAGAACAACAATTTGATAATTTTCCTTAACCATGAACTAAATATAAACACAATGAAAAGGACTTTTCATTCCCTGACCTTTATTATTCAATGTCTTTGGAAAAAGAAAGGACAACTGGAGAACTCAAACTGCAAGAAATTCTAAGTCCCAATAAACACAATAGGGTGGAAGTGATCAGAATTTCTTGATAAACTCATGGATGTGAACACTGATTTCATGTGGCCTTTCTTGGTTGATGAAGTGGGCAGTATCTTCCATTACAACTACTTCCTCCAAAAATGGCACGTCCGTCTTGAATCCACCATTGTGGATATACTCTTTGGCTCCTGGAAAATAGTAGGTCAGATCCAAATCCCCAACGATGAACTTCACTGGCACTTGGACTTGTGCTTTGTTCCACGATGCCGTCAGCTCCCAAGTTCTGTACCAAACAACAGAGTTCATCTGATTAACCAAAAATGCTTAAGCATACTAAAATGGATAGATGTAAGTAGGGTGTACAAGTCGAGAGCTCGATAGTAGTTGAATCCTCCAGTGAAGCCAGTGTGGTTAAATTTGGTAGCAAAATAGTTGATATCTTCTTGTGAGAGCCAAGAAGGAAGGTCATGTGGGGATGGGATAGAACGAATTCCAAGCCCTTTAGGCAATATTGGAGGATCTGGAGTTCTTCCACAAAGAATCTTTTTGAATAACTCAGTTGTGTCAATGGACCCAAAATCCTTTTCAGCCTCTCCTGGGACCTGTTACAAATTATTTCTTTTAGAAAAAAAAGAACACTTAAATTTAAAACAAAAACAGTAGTGTGTTTTTGTGTTTGGTTAAAATTAAAGATGTAATATAAGCAAACAGAAACAATTGGGAAGAAACAGAAAAGTAGTTTGAAATAGATATGACCTGAAACCTACAAATGTAGAAGTCATCACCAAAGGCAAATCTAAAACCTTGAACAAAAGAAATGGCTGGATTTCTTGGCAGGAAATGGACGCTGAGGTTCACCAATGCCTTGACTCTATCAGGCCTAAACAAGCAAAAATACCAAGCAATGATGGCCCCCCAATCATGGCCTACAACAAACACCTTCTCAATCCCAAGCTCATCCAAAGCCCCAACCAAATCTCCCACAATATGGAAGGCGGTGTAGGCTGTATGTGATTCAGGGGCGTCGGTGTCGCCAAAGCCCCGGAGGTCGGGGGCAATGGCTCGATATCCAACCGAAGAAAGGTAGAGAAGCTGGTGGCGCCATGAGTACCAAAGCTCGGGGAAGCCATGGAGGAGAAGAACAACTGGGCCGGTGCCTATGGAGGCGATGTGCATTTTGATGCCATTAGTGTTGATGGTGGTGTGTTCAATGGTCTCCATGAGCTCGTCTTGCAATTGGAATGTGAAGAAAAGGGTTGGCCGGCATGGATTTCAATGTGAATAAATATCATATCAAAAAGCTCTTGAATGTTTTTTGTTTATGTGTATATGTCTTAATCTGTATTGCAGGCGGCCGGAATGTGAAGACAGATGATGAATGCAAAGAGTTCGTCCAATCATTTCTTT

Coding sequence (CDS)

GTCACTGTCGGACCGGCCAGACCTCTTGCGAGCGGAGTGGCATTGCATGTATCGGACCGAGACCTCGTTTCTCCGCTTTTCCATTTGAGCATTTCTATTCTACGGACAGAGGTGAAAGAAATGGCGGAGGTCACCACCACTGGCAACGAAGTTCCTCCCAACATGACCATATACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGAGCTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGACAGGCTTGGGTTGTGTTCGAAGAAGTATCTTCTGCGACTAATGCGCTTAGACAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTAATGTGCTTGCTTTTTTTTTTTTTTTTCTTTTTCCAATTTCTAGAATTTTAA

Protein sequence

VTVGPARPLASGVALHVSDRDLVSPLFHLSISILRTEVKEMAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMVMCLLFFFFFFFQFLEF

Homology

[Close]

BLAST of Cucsat.G16670.T6 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.5e-31
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 49  NEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 108
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 109 SATNALRQMQGFPFYDKPM 128
           SAT AL+ MQ FPF++KPM
Sbjct: 77  SATEALKSMQDFPFHNKPM 95

[Close]

BLAST of Cucsat.G16670.T6 vs. ExPASy Swiss-Prot
Match: Q0DKM4 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.5e-31
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 49  NEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 108
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 109 SATNALRQMQGFPFYDKPM 128
           SAT AL+ MQ FPF++KPM
Sbjct: 77  SATEALKSMQDFPFHNKPM 95

[Close]

BLAST of Cucsat.G16670.T6 vs. ExPASy Swiss-Prot
Match: Q39244 (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-29
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 48  GNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEV 107
           G+EV PN TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQAWVVF+  
Sbjct: 11  GSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNT 70

Query: 108 SSATNALRQMQGFPFYDKPM 128
            SA+ A+ +M  FPFYDK M
Sbjct: 71  ESASTAIAKMNNFPFYDKEM 90

[Close]

BLAST of Cucsat.G16670.T6 vs. ExPASy Swiss-Prot
Match: P43332 (U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster OX=7227 GN=snf PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.8e-27
Identity = 58/78 (74.36%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 50  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 109
           E+ PN TIYINNLNEKIK EELKKSL A+FSQFG+IL+++A KTLK +GQA+V+F+E+ S
Sbjct: 2   EMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61

Query: 110 ATNALRQMQGFPFYDKPM 128
           A+NALR MQGFPFYDKPM
Sbjct: 62  ASNALRTMQGFPFYDKPM 79

[Close]

BLAST of Cucsat.G16670.T6 vs. ExPASy Swiss-Prot
Match: Q2KIR1 (U1 small nuclear ribonucleoprotein A OS=Bos taurus OX=9913 GN=SNRPA PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.4e-26
Identity = 58/78 (74.36%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 50  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 109
           E  PN TIYINNLNEKIK +ELKKSL A+FSQFG+IL++L  ++LK +GQA+V+F+EVSS
Sbjct: 5   ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64

Query: 110 ATNALRQMQGFPFYDKPM 128
           ATNALR MQGFPFYDKPM
Sbjct: 65  ATNALRSMQGFPFYDKPM 82

[Close]

BLAST of Cucsat.G16670.T6 vs. NCBI nr
Match: XP_008454331.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (446), Expect = 2.01e-52
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]

BLAST of Cucsat.G16670.T6 vs. NCBI nr
Match: XP_011652939.1 (U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical protein Csa_014424 [Cucumis sativus])

HSP 1 Score: 176 bits (446), Expect = 2.01e-52
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]

BLAST of Cucsat.G16670.T6 vs. NCBI nr
Match: XP_038906378.1 (U1 small nuclear ribonucleoprotein A [Benincasa hispida])

HSP 1 Score: 172 bits (437), Expect = 4.61e-51
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEV +TGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]

BLAST of Cucsat.G16670.T6 vs. NCBI nr
Match: XP_022948748.1 (U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U1 small nuclear ribonucleoprotein A-like [Cucurbita maxima] >XP_023524504.1 U1 small nuclear ribonucleoprotein A [Cucurbita pepo subsp. pepo] >KAG7036660.1 U1 small nuclear ribonucleoprotein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172 bits (436), Expect = 6.54e-51
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]

BLAST of Cucsat.G16670.T6 vs. NCBI nr
Match: KAG6606957.1 (U1 small nuclear ribonucleoprotein A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (436), Expect = 9.26e-51
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]

BLAST of Cucsat.G16670.T6 vs. ExPASy TrEMBL
Match: A0A5D3E0R3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001140 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 9.71e-53
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]

BLAST of Cucsat.G16670.T6 vs. ExPASy TrEMBL
Match: A0A0A0KWK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 9.71e-53
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]

BLAST of Cucsat.G16670.T6 vs. ExPASy TrEMBL
Match: A0A1S3BYG3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 9.71e-53
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]

BLAST of Cucsat.G16670.T6 vs. ExPASy TrEMBL
Match: A0A6J1K6I0 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC111492748 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 3.16e-51
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]

BLAST of Cucsat.G16670.T6 vs. ExPASy TrEMBL
Match: A0A6J1GA71 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC111452325 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 3.16e-51
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

The following BLAST results are available for this feature:

BLAST of Cucsat.G16670.T6 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2Y0J7	3.5e-31	83.54	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]
Q0DKM4	3.5e-31	83.54	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q39244	3.2e-29	76.25	U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1...	[more]
P43332	8.8e-27	74.36	U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster OX=7227 GN=snf P...	[more]
Q2KIR1	3.4e-26	74.36	U1 small nuclear ribonucleoprotein A OS=Bos taurus OX=9913 GN=SNRPA PE=2 SV=1	[more]

BLAST of Cucsat.G16670.T6 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454331.1	2.01e-52	100.00	PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 sm...	[more]
XP_011652939.1	2.01e-52	100.00	U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical ...	[more]
XP_038906378.1	4.61e-51	97.70	U1 small nuclear ribonucleoprotein A [Benincasa hispida]	[more]
XP_022948748.1	6.54e-51	96.55	U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U...	[more]
KAG6606957.1	9.26e-51	96.55	U1 small nuclear ribonucleoprotein A, partial [Cucurbita argyrosperma subsp. sor...	[more]

BLAST of Cucsat.G16670.T6 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0R3	9.71e-53	100.00	U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KWK4	9.71e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1	[more]
A0A1S3BYG3	9.71e-53	100.00	U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=...	[more]
A0A6J1K6I0	3.16e-51	96.55	U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1GA71	3.16e-51	96.55	U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 56..130 e-value: 7.3E-12 score: 55.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 57..126 e-value: 7.5E-11 score: 41.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 55..129 score: 12.168061
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 48..132 e-value: 1.5E-25 score: 91.4
None	No IPR available	PANTHER	PTHR10501:SF46	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 46..127
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 46..127
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 56..127 e-value: 5.27969E-48 score: 147.675
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 51..129

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16670	Cucsat.G16670	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16670.T6.E1	Cucsat.G16670.T6.E1	exon
Cucsat.G16670.T6.E2	Cucsat.G16670.T6.E2	exon
Cucsat.G16670.T6.E3	Cucsat.G16670.T6.E3	exon
Cucsat.G16670.T6.E4	Cucsat.G16670.T6.E4	exon
Cucsat.G16670.T6.E5	Cucsat.G16670.T6.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16670.T6.C1	Cucsat.G16670.T6.C1	CDS
Cucsat.G16670.T6.C2	Cucsat.G16670.T6.C2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16670.T6	Cucsat.G16670.T6-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005685	U1 snRNP
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0030619	U1 snRNA binding