Cucsat.G16670 (gene) Cucumber (B10) v3

Overview
NameCucsat.G16670
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionU1 small nuclear ribonucleoprotein A
Locationctg24: 2497930 .. 2503330 (+)
RNA-Seq ExpressionCucsat.G16670
SyntenyCucsat.G16670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATAAGCCCAACAAGAGAAATCCCGAACAGTTTAAGCCCAAAATCACTAGCGGGCTACTGCTTCTTCTTCTTCATCCGAAGTTAGGGCTTTCATTTTCAGTCACTGTCGGACCGGCCAGACCTCTTGCGAGCGGAGTGGCATTGCATGTATCGGACCGAGACCTCGTTTCTCCGCTTTTCCATTTGAGCATTTCTATTCTACGGACAGAGGTGAAAGAAATGGCGGAGGTCACCACCACTGGCAACGAAGTTCCTCCCAACATGACCATATACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGGTATTATTGAGTGGAGCAGCGGGATATGTAAACTTCTTTAATGCTCTGAATTATGTTATGATTATTTTATTTTTTTTCCTCCTTGGTGGAGCAGAGCTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGACAGGCTTGGGTTGTGTTCGAAGAAGTATCTTCTGCGACTAATGCGCTTAGACAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTAATGTGCTTGCTTTTTTTTTTTTTTTTCTTTTTCCAATTTCTAGAATTTTAATTTCTTTTTGCTAAATTCAGGGTGAAGATGAAGGGCTAGACTTGAACCTTACTGGAAAAAGATCTTTATTATTCGTATGAGCACTTGTGCTAATTAAAGCGATAGTGACGAATTAGAAAGTGCCGATGTATTCTTCTGAGCAACTAATAGGAATTGTCTTTAGATTATGTTTCATCTTGTTTTAAAAAAGTTGAGATTTACTTACACATGGCTGTTAAATAATCTGGTTCATTGCCTAACTGATGTTCTGATCTACATATAATATACAATGAATTTTCATAGCTGATATTATTCCGGAGAGGTTCAAGAACAACTATTGTTTGAATGATCAACCATGTAATAGAATAAGCTCTGAGCAGTTGATCTTGAAGTGTTTACTTCTTCAATATATCACATTGCAGGCGTTTGAATTTACTTCACCTAAGCTTTATGACATTGGTTCTTATCAGTTTGACGCACATCAAGTGGTTGTCTAACATGGCTTCTGCAAATCTTTTGAAAATTTTATATCTGTTTAGCATTTCTTGTTTGTAGATCTGGTGGCTAATTTCCATATTTTCTTTGTGTTTATGAAAATTCTATATCTGTTTAGCATTTCAGATGGCTTTTTATATTATTTATTGCTCTGTTCTATCATTCATCTTTTGTTAGCTGGACAAAGCTTTTTTGTGGGAGTATGGTGCAATATGAAGCTAAGTGATGTTGTTTTGCAATCTTGTAGAGAATACAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGACGGTTCATTTGTTCCTCGGGAGAAGCGAAAGAGGCACGAGGAAAAGGGTATAGTTTGTCTTTCTTTTCTATTTGACAGTTCAAATTTGAATATGTTTGAACAGTTCGGTACATGAAGATTTGTATCAGCATTTCATCCGATAACTTGATAGGAACTCCCTTAGGTATATTAGTCAATAGCTAGGAGAGTTTGTTATGAAATGTGGTTATAAATGAAGGTTAAGGGAATGAGATAGGCAAGCAATGTTTTAGTGACTGGTTTTGGGGTCAGAGAGTTATCGGGAGTGGGAGGGACCAACTTGCAAGTACCTTGAACATTTGTCTTATTTTGTAATTTCGTTCTCTTACCTTATTATTTATGTAACCTTATTTTCTCAAGATTTATTCATTTTCTTGATGTGGCAGGGAGGAAGAAGAAAGAGCAGCATGATGCGAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTGCTGGAGCATATGGTGCAACAGCGGTAAGTATCTCTGTTTAATTCCTAAGCATTAGTTTTTGGAATATTCTATTATTTGCATTCCATTGCATAGTGGTCTTCCATAATATTTCCATCCCTAACTTCAGATTTGAGACTTAGATTGATTCTCCAACGAAGCCACTTAAGATGTTATTTGTTTCTCTGTGGTTAAAAAATGCATTCTAAGTGCTTCATTGACATGATTGTAATTCTAAAGTATAAGATCATAAAGAACAAGAAGTGGAATATAAAGAGACAGAACTTCACTTCTTGAGGCCAATTTTGCTTATTAAGAATGATGCTCTCTCATTATTTCTCATTTCTCACCCTTTTCATTAATTTGTATGGTACTCTGTGAAATAGGGAGCACATCATTTTTTTACTCCCTCCCACGTAGTGAGTCCATTGTCAATTTCAGTAATTCTTTTGAATTTTATCTGCCTTTTTAGTTTATTGCGCAGAGAAAAGCATATATATAGAAAAAGATAATAAAAAACGTATATTGGGGTTTATTTGCATTTATTACTTTGGTCATTTTGTATATCATGATTGTTAAAGAACCCTTTGCCATGGTTCAACACTTTAATTTCTAGGACTTGGTGGCTGGTGTCTGCATCTGCATGAGTGGATGTACTCTTATATGCCTTTTATCTATTGACTAAGCATTTTAAGGTGGCATGTCTTTGTTGACTTTCATCATTTGAATAATTTGTGTACTGAATTATGTTTATTAATTGGAAAGTATTGATTGCTAACGAACACTCTCTCCTTTCCCTCTTCTGAAAATGGTGCAGCACTCTCAAGTACCTTATTCAGGTGGAGTTATGGTACCGGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTGTACAAAATCTACCACACGAGACCACTCCAATGATGCTACAAATGCTTTTCTGTCAATATCCTGGTTTCAAGGAGGTTCGAATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAATACAGTGATGAGGTACAATCAACAGTCGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCACAAAATTCGATGTTGATAACCTATGCGAAGAAATAGGATAGAGTGAAACTTGGCCGAAAGCCACCTGCTATTATTCAATGCTTAGTACAGGAGATTGTTTGTAGAATACTGTCATCTCGTACTTGCTGGAAATTCTACCCCACCGCAACCTAATTAATACAATCAGATCAGTTCTCTTAAGCAGGAATAGAAGAGATCTTCAGATCCCGGTTACCATGATTATCATTGAACTTATAGTAAAGTTTGATTTCATCATCCCATTTTGTTCTCATTTTCATAGTAGTGTATTTCCTTCTAATTGTGCTGTAAAATAGACTAAAAACTTTCATAACTGAGCTATTGAAGAGGTAATGATGTTGAGACCTAATTTGATAGACTTTATTTTAGTGAACAGCCAAGTTCTACTTCTACAGGACACAACAATTCCAAAATGCAAGCAAAATGAGATCCTGCTGCAGCGTTGAGAGAGATATCCCCAGTAAGTACAGCTTAATTCTTGAACTAGATTTTGTCTAATATCTCCATTACTTTTACTGGCATAGCGAATTCGAGTCTAATTGATATTGTAGACTATATATTCACTATATTATATCTGAGACTGAAAACTGGTTGGAAGAAAAAAGTATTTATGAACACAATAGTTAAAAACTTTTAGGGGGGGCTTCATTAGGGAACAACTGCTCCATCTTCAAGAATCTTGAGCTTCAAGGGAATATTGTGCTAATCTGAATTTGAACGTTGCGTTGTGAAGTGTCAAGTGAAGTTAAACAGATGCCAAGTTGAGGCTCTATACTAGACTTTGACTTTATATTTGGGTTAAGGAGTTTATTTATCTTAAAATTCTGATTTCATTTTGAGTAGGAATTTCTCATTTTTAGATTATGAACACAATATATTGACAAAATATGGCCAAATAAGAAAGGAAAGAAAACCTCTATAAATTTATAGAGAATCGCCTCTAATTAAGTTGCATAAAAGCAATTTTGAGCTTGATAAGAAATAAAACCTTGCAGTTCTCATCTACTCGAGAACAACAATTTGATAATTTTCCTTAACCATGAACTAAATATAAACACAATGAAAAGGACTTTTCATTCCCTGACCTTTATTATTCAATGTCTTTGGAAAAAGAAAGGACAACTGGAGAACTCAAACTGCAAGAAATTCTAAGTCCCAATAAACACAATAGGGTGGAAGTGATCAGAATTTCTTGATAAACTCATGGATGTGAACACTGATTTCATGTGGCCTTTCTTGGTTGATGAAGTGGGCAGTATCTTCCATTACAACTACTTCCTCCAAAAATGGCACGTCCGTCTTGAATCCACCATTGTGGATATACTCTTTGGCTCCTGGAAAATAGTAGGTCAGATCCAAATCCCCAACGATGAACTTCACTGGCACTTGGACTTGTGCTTTGTTCCACGATGCCGTCAGCTCCCAAGTTCTGTACCAAACAACAGAGTTCATCTGATTAACCAAAAATGCTTAAGCATACTAAAATGGATAGATGTAAGTAGGGTGTACAAGTCGAGAGCTCGATAGTAGTTGAATCCTCCAGTGAAGCCAGTGTGGTTAAATTTGGTAGCAAAATAGTTGATATCTTCTTGTGAGAGCCAAGAAGGAAGGTCATGTGGGGATGGGATAGAACGAATTCCAAGCCCTTTAGGCAATATTGGAGGATCTGGAGTTCTTCCACAAAGAATCTTTTTGAATAACTCAGTTGTGTCAATGGACCCAAAATCCTTTTCAGCCTCTCCT

Coding sequence (CDS)

AATAAGCCCAACAAGAGAAATCCCGAACAGTTTAAGCCCAAAATCACTAGCGGGCTACTGCTTCTTCTTCTTCATCCGAAGTTAGGGCTTTCATTTTCAGTCACTGTCGGACCGGCCAGACCTCTTGCGAGCGGAGTGGCATTGCATGTATCGGACCGAGACCTCGTTTCTCCGCTTTTCCATTTGAGCATTTCTATTCTACGGACAGAGGTGAAAGAAATGGCGGAGGTCACCACCACTGGCAACGAAGTTCCTCCCAACATGACCATATACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGAGCTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGACAGGCTTGGGTTGTGTTCGAAGAAGTATCTTCTGCGACTAATGCGCTTAGACAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGAGAATACAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGACGGTTCATTTGTTCCTCGGGAGAAGCGAAAGAGGCACGAGGAAAAGGGGAGGAAGAAGAAAGAGCAGCATGATGCGAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTGCTGGAGCATATGGTGCAACAGCGCACTCTCAAGTACCTTATTCAGGTGGAGTTATGGTACCGGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTGTACAAAATCTACCACACGAGACCACTCCAATGATGCTACAAATGCTTTTCTGTCAATATCCTGGTTTCAAGGAGGTTCGAATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAATACAGTGATGAGGTACAATCAACAGTCGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCACAAAATTCGATGTTGATAACCTATGCGAAGAAATAG

Protein sequence

NKPNKRNPEQFKPKITSGLLLLLLHPKLGLSFSVTVGPARPLASGVALHVSDRDLVSPLFHLSISILRTEVKEMAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK
Homology
[Close]
BLAST of Cucsat.G16670 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.5e-31
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 0 

Query: 49  NEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 108
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 109 SATNALRQMQGFPFYDKPM 128
           SAT AL+ MQ FPF++KPM
Sbjct: 77  SATEALKSMQDFPFHNKPM 95

[Close]
BLAST of Cucsat.G16670 vs. ExPASy Swiss-Prot
Match: Q0DKM4 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.5e-31
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 0 

Query: 49  NEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 108
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 109 SATNALRQMQGFPFYDKPM 128
           SAT AL+ MQ FPF++KPM
Sbjct: 77  SATEALKSMQDFPFHNKPM 95

[Close]
BLAST of Cucsat.G16670 vs. ExPASy Swiss-Prot
Match: Q39244 (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-29
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 0 

Query: 48  GNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEV 107
           G+EV PN TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQAWVVF+  
Sbjct: 11  GSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNT 70

Query: 108 SSATNALRQMQGFPFYDKPM 128
            SA+ A+ +M  FPFYDK M
Sbjct: 71  ESASTAIAKMNNFPFYDKEM 90

[Close]
BLAST of Cucsat.G16670 vs. ExPASy Swiss-Prot
Match: P43332 (U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster OX=7227 GN=snf PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.8e-27
Identity = 58/78 (74.36%), Postives = 70/78 (89.74%), Query Frame = 0 

Query: 50  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 109
           E+ PN TIYINNLNEKIK EELKKSL A+FSQFG+IL+++A KTLK +GQA+V+F+E+ S
Sbjct: 2   EMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61

Query: 110 ATNALRQMQGFPFYDKPM 128
           A+NALR MQGFPFYDKPM
Sbjct: 62  ASNALRTMQGFPFYDKPM 79

[Close]
BLAST of Cucsat.G16670 vs. ExPASy Swiss-Prot
Match: Q2KIR1 (U1 small nuclear ribonucleoprotein A OS=Bos taurus OX=9913 GN=SNRPA PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.4e-26
Identity = 58/78 (74.36%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 50  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 109
           E  PN TIYINNLNEKIK +ELKKSL A+FSQFG+IL++L  ++LK +GQA+V+F+EVSS
Sbjct: 5   ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64

Query: 110 ATNALRQMQGFPFYDKPM 128
           ATNALR MQGFPFYDKPM
Sbjct: 65  ATNALRSMQGFPFYDKPM 82

[Close]
BLAST of Cucsat.G16670 vs. NCBI nr
Match: XP_008454331.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (446), Expect = 2.01e-52
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]
BLAST of Cucsat.G16670 vs. NCBI nr
Match: XP_011652939.1 (U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical protein Csa_014424 [Cucumis sativus])

HSP 1 Score: 176 bits (446), Expect = 2.01e-52
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]
BLAST of Cucsat.G16670 vs. NCBI nr
Match: XP_038906378.1 (U1 small nuclear ribonucleoprotein A [Benincasa hispida])

HSP 1 Score: 172 bits (437), Expect = 4.61e-51
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEV +TGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]
BLAST of Cucsat.G16670 vs. NCBI nr
Match: XP_022948748.1 (U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U1 small nuclear ribonucleoprotein A-like [Cucurbita maxima] >XP_023524504.1 U1 small nuclear ribonucleoprotein A [Cucurbita pepo subsp. pepo] >KAG7036660.1 U1 small nuclear ribonucleoprotein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172 bits (436), Expect = 6.54e-51
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]
BLAST of Cucsat.G16670 vs. NCBI nr
Match: KAG6606957.1 (U1 small nuclear ribonucleoprotein A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (436), Expect = 9.26e-51
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]
BLAST of Cucsat.G16670 vs. ExPASy TrEMBL
Match: A0A5D3E0R3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001140 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 9.71e-53
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]
BLAST of Cucsat.G16670 vs. ExPASy TrEMBL
Match: A0A0A0KWK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 9.71e-53
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]
BLAST of Cucsat.G16670 vs. ExPASy TrEMBL
Match: A0A1S3BYG3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 9.71e-53
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]
BLAST of Cucsat.G16670 vs. ExPASy TrEMBL
Match: A0A6J1K6I0 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC111492748 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 3.16e-51
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

[Close]
BLAST of Cucsat.G16670 vs. ExPASy TrEMBL
Match: A0A6J1GA71 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC111452325 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 3.16e-51
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 41  MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 100
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 101 WVVFEEVSSATNALRQMQGFPFYDKPM 127
           WVVFEEVSSATNALRQMQGFPFYDKPM
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPM 87

The following BLAST results are available for this feature:
BLAST of Cucsat.G16670 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2Y0J73.5e-3183.54U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O... [more]
Q0DKM43.5e-3183.54U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
Q392443.2e-2976.25U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1... [more]
P433328.8e-2774.36U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster OX=7227 GN=snf P... [more]
Q2KIR13.4e-2674.36U1 small nuclear ribonucleoprotein A OS=Bos taurus OX=9913 GN=SNRPA PE=2 SV=1[more]
BLAST of Cucsat.G16670 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008454331.12.01e-52100.00PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 sm... [more]
XP_011652939.12.01e-52100.00U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical ... [more]
XP_038906378.14.61e-5197.70U1 small nuclear ribonucleoprotein A [Benincasa hispida][more]
XP_022948748.16.54e-5196.55U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U... [more]
KAG6606957.19.26e-5196.55U1 small nuclear ribonucleoprotein A, partial [Cucurbita argyrosperma subsp. sor... [more]
BLAST of Cucsat.G16670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E0R39.71e-53100.00U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0KWK49.71e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1[more]
A0A1S3BYG39.71e-53100.00U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=... [more]
A0A6J1K6I03.16e-5196.55U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1GA713.16e-5196.55U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 55..129
e-value: 8.0E-11
score: 52.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 56..125
e-value: 8.6E-11
score: 41.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 54..139
score: 12.389781
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 48..132
e-value: 5.6E-25
score: 89.4
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 45..126
NoneNo IPR availablePANTHERPTHR10501:SF46U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Acoord: 45..126
NoneNo IPR availableCDDcd12246RRM1_U1A_likecoord: 55..126
e-value: 4.75457E-48
score: 147.675
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 50..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G16670.T4Cucsat.G16670.T4mRNA
Cucsat.G16670.T2Cucsat.G16670.T2mRNA
Cucsat.G16670.T3Cucsat.G16670.T3mRNA
Cucsat.G16670.T1Cucsat.G16670.T1mRNA
Cucsat.G16670.T6Cucsat.G16670.T6mRNA
Cucsat.G16670.T7Cucsat.G16670.T7mRNA
Cucsat.G16670.T5Cucsat.G16670.T5mRNA
Cucsat.G16670.T8Cucsat.G16670.T8mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005685 U1 snRNP
molecular_function GO:0030619 U1 snRNA binding
molecular_function GO:0003676 nucleic acid binding