Cucsat.G13186.T14 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G13186.T14
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	regulation of nuclear pre-mRNA domain-containing protein 1B-like
Location	ctg1838: 1889302 .. 1904511 (+)
RNA-Seq Expression	Cucsat.G13186.T14
Synteny	Cucsat.G13186.T14

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGTGCAATTGTTATGATTCTGTTTATCTTTGATATCAAATTAGCTTTATCAAAATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTCGAAACATGGGATAAATTATTCAACTCATCGCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCAAATGATATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAACGAATTCTGGAAAGTTCTTCCTGGTGCCCTCAAGTATGTATACGATCATGGCGACGAAAGTGGAAAGAAAGCAGTTGCCAGACTTGTATGTCTTCTTTTTACTTGTGCAGAAAAAAAAATGGCAATAAACCTTCATATGTTTTTCCCCCTAGAAGCATGTCAATTAACTCTTTGAACATTTTGCCCAAAAGTAAAGCATTTTGCATATCTGACATTAAAATTCTTCTCCTCCTTCCCCTCCCACATAAAAAATGGGGTGAAGAAGAAAAACGGAAAAGGGAGGATGGAATCCATTCATTGATTGACACATTTATATCATAAATATTTCTACTAAGGCTTCTCAGAGATTGACATTTGGTAATAGAACTTTCATTTCTATTTAGGCAAGTCTTTTGATACGTGTTTCATGGGTACTGTGGTTGCCCAGTTGATGATTATTCCTAAAGCTTGCATATTAGACAGGAATCCTCTAGTAAATTAAGGATATGTGGGTTTTAAACTTCTGTTTGAAGCATAATAAGTGGTTGCTTTTGCCTTTCCATTTGTTCCATTCCTAGACCTAATTTAGATTAGTTTAGGTTTTTTGTTTTCTTATTTTTTTTAAAAACTAAGGAGTTTAGGAATCTTTTCTTAAACGGAAATCGAACTTTTTCCTTGAAATAATAAAAGAATTTAGGATCTATGAACCTTGTAAGGGATAGATGAAATTTTGATTTGATATTATGATTAATATTTATTAGGAGGGAAGAAAGGAAAATGAGCTGAGGTTTCTTATAAAGACGCAGCTTGTCATTTGAAAAGCCTATAGTTTAGTGTTATGGTTTTCTTGATTCTATTAACTATGGTACATATTTTAAAGACAAGTTGAGATGATAACCTCCTACATTCGTTCATTTCCAATCTTAAATTTTTTGTTATTTTGGAAAAGAAGCGAGAATATTTTATTGAAATAAGGAAAAGAGATTAATACTAGAAAAAAGTACAAAGCTCCAATTGGGAAATAAAGGAACAACTAAGGATGAATGTAAAGGGAGTAAAAACTGTACAATTAGTGTTAAAACCTCCCGAAAATGAACAAAAAATAATGATCCAAACAAAACATCAAATTAAAGTCCAAAATTGCTGAGTTTTATGCAAAAGAGACTGAAAGAGGAAGGAAACGAAGTTGGCTAAAGATAGATCACGGAAGACAAAAATTTCCAACCGCATTAAACACCAAACCACCAAATAAGAAGGCCCTAAAATCTTCTGAAAAAGGCTTCAATAAACAAACTTCCAATTTCAAAATGAAATGGAAAAGATCTTCAACACCAGTGTAATTAAAAACTTATGATTCACGATTTGTATCATACAATTCAAATCAAAATGAAGGGCAAACCAAATGATTCAAATCGTGATTGTGAATTGAAAATTATATGTATGATACAAGTCTGGATAAGACGTGCAATATATTCTTGTTAATGTAAGACCAAAGATTAACTAACGTTGATTGACACAAGATTTGATTTACCATTCTTTCTTATACTTGTGGATGTTTTAAATAAGTTGTTGATCAGGTAACATTTGTTGATATTTGAAAGTTTTTGATCAGCCAAGATTTGATTATCCTAATAAGCCTTGCTAAGTCTTTGGGGAAATTTTATATTTACAAAATTCTTAAGATAGCATATTGTGAATTCATAATGTAATTTTGAAGTCCCCGATCATTATTTCTTCCGGATCAGCCTTATGCATCAACAAGTTTTTCTGCTCAATCAAGGATTATTCTTCTTTGTTCTTGGCTGCTGCCTTTGTTTTATGTTTTGTTTTTGGACAGATTATGTATATTTGTATTGGAATAGCATCCTAGTATAAGGGTTTTATTTTTGCTTCTTGGATGTGATGAGGGCACTATGGGGTGTCAACCTAGTTGAGATGTCCGGGTGCGCCTGCTGATCCCCCCTATTTCTCCTTGTATAATCCTTTGGACATTGAGCTTTGTCTCTCTATTTTTCTATATATTAATAATAGTGAGACTTGTATCATTTTCAAAAAATCCTAATTAATTAAAGAAACTAATCCTAATCCTACTAGGAACAAGGTATCATGGTCAAATCCTTAATCTATTAGATTAGGATTAGCTGTTTTTGTTAATTAGGATTGGGATTAGTTTCTTTGGGTTATTAGGATTAGGAATAGGGTATTATGGTCAAACCCTTTCACTAGAATTAGTTTCTTTTATTAATTAGGATTAGGATTAGTTCACTTTTCAATTATAAATAGAGTAGTTGTTTTCATGTATTCACAACTTTTAAACATTAACAAAATTCTCATATTTGATATACACTAATTTGGTACCAAAGCAGCCGTCTAGGCTAACGTTGACTGCCATTAGTAGAAGATCGAGAAACTTTTCGTCACTTCGGTCACAAGAGGGAGCTTTGTGAGCTGTGCTTGTTGTCAAACAACACATATCTATCTAGGGGGAACCCGTAAAATTTCAAAGAAAAAAAAATAACCAAACATTTATCAAGATTTTGCAAGAACGTAACTTTTTAGAACTACTCTAATTTGGGATAAAAATTATCATAGAGATCAACCAAGAAAGGTTGAGAAACATGCAAGAAAATTTAAGAATCAGTCCTACAACAATGATGAAGAAGCTTAGTAAGGGTGTTCCAAGTTTTTTTGAAAACGGAATCGTTAACAGAATATTTTGATTGCTTTTGAGGCCGTTGATGAATGGTCTTTAAAAGGTAGAAAAGGTGTTCTCTCTTGATCTGGAGAAAGCCTATGACAAGGTGTATTGGTTTTTTCTTGATATGGCCATGAAACTTGAAGGCTTTGGTAAGGGATGGAGGAGATGGATTTGGGACTGCTTGTTGACTACTAACTTCTTGATCATTGTAAACGGTAGGCCTAGAGGAAAGATTACTGCTAAAACGAGCATTCGTTAGCCTCTTGCCCCTTTTCTTTTTACGATCATCAGAGAGCCGTAAGCTGCCTTATTTACTATTGTAATGAGAAGAACTATAAGAAACTTCCATTTTGAGAATTTGTCAGATGAATTAATCCATCTTTAATACATGGATGATACTCTTCTCTTCTCTTCTTGGGAGGATGGAAATTTGGAGACATGGTGGAGGGTGGTTAATATCATTCTTCTTGGAGTTGGTTTATCCCTTACTAGTTCCAAAACGTCTTTAATCGTTTACCTTAACATTGATGATTTGGCTTTTTATACTAATATTTTGGGTTGTTCGATGGGTAGTCTCCCGTTTAACCACCTAGGCTTATCTATTGGAGGGGGTCGTAATAGAAAAGAGGTGTGGAACGCCTTTGAAGAGCGATTCAAATATAAAATTGACGGAGGAATTTGCCCCTTTCCAAAGGGGGCAAGCTAACTCTTGTGCAATCGGTTCTGAACAGCCTTCCTTGTTACTTATTTTCCCTTGCATAAGCTCCGGTTGGTGTTATCGATAGACTGGAGAAGAGGATTAGGAATTTTGTTTGGACAGGAGGTTGGTCTTCTAATTCGGTTACCCACCTCCTCTTGCCTGATCTGTTATGGTGGCCTTGGGATTAACTCGTTTGGGCAAAAGAACACTGCTATTCTCACTAAATGGCTTTGGAGGTTTAGCAAGGAAGAAGCTTCTTTATGGGGGCGATTAATTGTGGCCATATATGGCTTAAAGGAGAATGCTTGGTCTACTAAAGACCCGAATAGGGGAAGGTCTTATAGATTATGGGCTGGAATCTTGAAACATAAGGAGACCTTTAAATTGTTAGCTTTTTTGTTGGGAGAGGGAACCATAATCAGATTTTGGAAGGACGGTTGGTGTGACGTGCAACCATTAGCAGAAAAATTCCCTAACTTGTTCTCCTGGTCATTGAACAAGGATGCTTTTGTGGCTGAATGTTGGTGTAATGTTAGTCATTCTTGGAACTCGGGCCTTAGAAGAAATGTGCTTGATAACGAGCCTGACAACGTGGCCACAATTCTGAAAATTCTTCATTCTTGGGCCCCTTCAGATGGTGGTGATAGTCTTAAATGGATTCCTAATGTTAATGGCAACTTTACTACGAAGTCTACGTTTCTTCTTATGGTCACTCACCTATAGAAGTCATAACACTTGTAAGAAACTCCAAAAAAAATTCCAGCACACTATGCTAAGCCCCTTGATGTGCTGATTTTTGCATTCTCTCATTACTAGGAAAGCTTGGAACACTTTGTTCAGAATCTTTCATTTGGAGCTTGTCTTCCTATTTCCTAGTAAGGTTGATAGTTGGATGCTGGAAGGACACAACATTAGAGGTTATAGTCCGAAAGGAAACATCTTCTGGAGATGTGCTACCTGGTCCCTTTTGTGGTGCATTTGGAAATAGAGGAATAGTAGAATTTTCGAAGACAACTATAATTCTTTTGATTCTTTTTGGACTATGTTGCAACACACAACTTTTTGGTGGAGTATGAATTACACCAAACACTTTTGTATTCGCAACCTTTCTATGATTTTCAACAACTTCTTGGGGAGGGCTCTCTTGTCCCTTGCCCTTAGGTTGTTCTCTTTCGTTTTATGAATATACATGTTTCTTATAAAATAAAGCTTAATAAAAAACACCCAATTTGTTCGTCAATCGTGAAGTTTCTGAAGAAACAAAGAAGGATATCAAGAAAATCCTCCGTTTTTTGGGAGAAAATTCAAAACATGGAGCAATTTTCAGAACATTTGCAAGAACCTTAAAAAGATGTAATTCAAGAAATTCACTACGAGGAAGGAATGGATGAACACAAATTGAGGAGCCCACACAAAATTTCTAAAATGAAAAAGAAAACCCACGGGAAACTGATTAGAAGAAACTTGAAAACCTAATTACAGTTGACTACGAAACAAATGGGGGAGATGATATGTCTTGAATAAAAAAAATTAGGTATTTGGTCGGCAAGGCAGAGGTGACCAAATCAAAAGATCTGACCAAGAAGATGAAAGACACATTTTTTATGGAAAATAAAGTAGAAAATCATGTGGTTGATGAAGATCCTCAAAAGCGTATTGGCAACCTATTTGTAGTTGTAAACAAAGGAGAAGAAGACGACACAACTTTTTGGCAACCAATTTGGTCTCGCAAATTTATTACCCTTTTTCAGACCCTACCTGAAAGACCCATGACTCATGTATTCTTTTTCTCCCTAAAACACAAACCCAAATCCAGTTCAAATTTGGCCCTCATTCCCTTTTATTGAGTCTATTGACTGACCCATACACAATTGTTAAAATGCAGGAAACCCATCCCCAATTGAATTTTCTTCGCTCTTACAAACTGGGGTTTTCCTCATTTTCTGAAAATTCTGCCGATTCTTTTTATAGTAGAGGATTTTTTGAACAATTTAGTTATTGGGTTCATTGGCTTTATCATGAAAGATTGAATTTTTTTTGAAACGGAGACAAGAATTTCTTTATTAATATGAACTCAAAGTACAAGAGATTTATACAAAGAGAGCCATAAAAAAGTAGTAATCAAGGGAGTCCTAGAGGGATCAGGAGGCACACCCGAACATCTCAACTAGGTTGACTTTCCATAGTGCCAAACATCATATCCCGAGCACAAACAAACAATAATAAAAGCATCCAGCTTAGTACAAAGGTCCAGAAAACAGTATGGGATTGGAAGAAAACAACAAAATTGAATATTTTTTATGTTGAATGTTCCAAGATGTTTCCATTCAAGTGATTTGCTTTTTTATTTTCATCCTCATTTTCGTTTTTTTTTATACAGAGACAAAACCTCTTTATTAATATGAACTCAAAGTACAAGAGATTTATATAAAGAGAGCAATAAAGAAGTTGTAATCAAGGGAGTCCTAAAGGGAACAAGAGGCATACTCGGACATCTCAACTAGGTTGACACCCCATAGCGCCAAACATCACTCGATTAAAAACATAAAAAACCCATTTTTGTTTTAAAACTCGAGGACTAGTTTTTTCTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGAGGGGAGGGATAGAATGATGTTGTAGGAATAGGGTATTATGGTCAAATAATTAATCTATTAGGATTAGGATTAGTTTCTTTTATTGATTAGGATTAGGATTAAATTTTTTTGTTTATTAGGATGATTAGTTTCTTTTATTAACTAGGATTATGATAGGATGGATGAATGAATGGATTAGTTTTTTCAAAGAGGATGGATGAATGGTTGATGTTTATTTTTAATGGAAACATGTCTCTTTATTAATATAAATGAAAGAGACTAAAGCTCAAAGTACAGGAGACATACCAAGAGCAAAAAAGACTAAAAAAACACATACAACATAAACTGATACAAGAGAGAACATAAAAAATTTCAACGAGCTGGACAAGACCATCTAGAATCCGAGCAAGACAAGAAGAAAATACAAGGCAAAGCGAAAAAAAATTCAACAAGGAGCCCCAAATCAGCTAAAATCTTAATCCCAAATGGCTTAAAAAATGAATGGGAAGAACACCATGAAAAGGTGACCAACCGAGCTGCATCAAACTTGATTTAAAAGTACGAATGTGTGCCCCGGAAGACTTGCTGAAATCTTCCATCTCACAAAAAAAACTGCACATGTACTATTGAAAAACCAATCAATGGTCCAAATATTTGAACAGAATTCTGAAAGGAAGAAAGAAAGAAAGAAATACAAAGAAAAAGGCCAAACATGAAATCTCTCGCTTTACAAAAAGACCATTATCTTGCTTCAACAATCCTTCCCAAACGCCTGAGACTCATTGTATTCCCATTCAAATATTAAGATTAAATGTTTGCGGGACCAGAGAACATGTGTACTTTCAGTGCTCAAGCCAAAACCAACCTACATTTCTCAACAAAGGACTTCAAATGATCTAGAATACCACATGGACGAGCTTGTGAGGGATTTCCAGCAGCTTGTTTCTCAAAAAATGAATCTTACTCAGTCAAATAGAGAATTTAGATCAGTCTCTAAAGGGTCTTTCAACAATTGATCTTCCTTCTCATCTAAACTTATAAAATCACCATCCTCACTGCTCATACTGAATGGAGAGTCAAAATTGGAAACAACCTTCTTTTTGGATGGGGGGACCTGAGTTTGGCTGGGAGAACCTCACACAAGAACTTTAACTTTGGATTAGGTAAAGAAAGAACAGAGTAGTTTAAATGTGGATGAATCGTGCTTTGAAGAACCAACCTATTTGGAAAAGATGGGCACAATTTGATTCTAAAAGATGAGGATTCTGAATAGATGATGTTAATGTTAGCAGTTACTTTGACATTTGATCCATTGAGAGTTGATGAAGAGTGGTTTTTTTTTTTTTTGTTGACTTGAAGGGAAGAGAAGAAAGAAAGGAAGAAGGCTCAAGTTTATATGTGTGTGTGTGTGTATTTATATATAAAATATATATTTTTAGGAAGAATGATAGGTTAAGAACAGGAGAGATTTTAAGAGATCGAAGAGAGGAAAAAGGTAAGAAGAAGAAGGGCAAGAAGAAGAGATCAATAATATATGATGGAGAGAGAAGTTTCAATTCTGGTCTCACATGTTCAATTCAATTCTTTTCTCCCTTTCGATGATTTTCTAGATTTGCTGTATTGGGTGGATTCTGCTCTCATTCTAATAGGCTGGATCTTGTTCTCATTGTTGTAACAAGCTAGTTTTAATAAGGATATGATATTTTGGTGCTAAGGGGGTGCTGACCTAGTTGAGATGTTCGGGTGCTCCTTCTGATCCCTGTTCTTCTTTTGCTTGTATAGACTTCTTTATTTAGCTCTTTGTATAATTCTCTTATACATTGAGTTCTTATTATTAATAAAGAAGTTTGTCTTTGTTTCAAACAAAAAACAAAAACAAAAAAAAATTCTGGTCTCACACGTGGAGACCCTCACCGGATTTGACTGGAGTAGTCCACGTTTGGTGGATGGCGGTGACCATCATTGTTGGCCGTGGTTGAAAACGCTCCATGAAGAATGCTCAAGATTAGGCTATGATGCTATGAAAAATCCAGAGTTAGAGAGAATTTTAGTGAGATAAAAAGAGAAGTGGAGAGAAGGAGAAATGTTCATTAGGGTTTCTCATCAATTAAGTTGATGAAGATTCTTTTGATGATGGTTTATGCTTTCTTTCAATAATGGTGGGCAATTTGATTGGTAAGATAGAGCTAGGTTATCTAAGGGCCATCCCTTTAGCAAAATTCTTTGTGCTCTCTCAGTTTCAATGGATTAAGAAGATATTTCCCATTATTTTGAAGAATTTAGTGTTATTGATAAGGCAATCCTAATCCTCAATCCAAAGATCCAAGCTATTAACGTAGCAAGAACCTTTGAAATAAGAAACTAACACCTCCTTATACTATTTTAGATCAAACAAGAGAAAGTACGTGTTAGTTATTGAGGAACTTTCTTCATGAAGAATGAATGATTGGTTAATCTTTGATGTCTTCAATCTTGTAATTGGTCCGTATGGAACATCATGATTCTTATCAGTTACTCTCTGTGAAATAAAGCCTAAGAGTTATTGTTAAATACTGGTTGCACATTACTGTGACTTTAACGTACAAACTTCAATTTCTTTTTCATAAAAAAGTGCATTGTACTTTTTTTTTTAAAGTGGAAACAAACTTTTCATTGACAAAATGAAAAGAGATTAAAGATTGAAATACAAGGAGACATAAAGAACATAAAAGAACAACCCCAAAATCAGCCCCAAAAAGCATCTTATAGTTTGATAGATCTAATGAAATTTTATACATTTTTCTTTTTTGATTACAGATCACAATCCATTGACATTTCCTTCTGAATTATCCTTCTCTCGTGTTTTTTTTTTTTTTTCTGTTGTTATTGTTGTTGAAATACACGTCTTGTAATGTTGATTTTAAATTGTAACATCTCTTTCCTTTTTTTCTATTGAAAGTATCTCAAGTGTTATTTAAGTTGGGATTTCATTTGTCTCACTCAATTTTGTTTCCCTTCATGGGAGTTGGTTTGTTAAGGTCAATATTTGGGAAGAAAGGAAGGTTTTTGGTTCTCGGGGGCAGAGTCTTAAGGATGAAATGCTTGGTAAAAATCCACCTCCAACTCCGTTACCCAGCAGCAATGGAAAGAGTTCAAATCCTATAAAAATAGTGAAGAGGGATGCTCACTCTGTGAGAATTGTAAGAGCTTAGCTGTGGTAGCAGTGGACTATTGCAGTTTTTTTTTTTTTTTCTTGTGTTATGACTCCTATATCTTTACTGCTTAACTCTAGAAACTGGCTGTTGGAGGTGTTCCAGAGAAGATTCTTACTGCATTTCAATCTGTCCTTGATGAGCATCTGAATGAAGATGCTGCTCTGATCAACTGTAGCTCTGCTACTCATCATCTGAATCAAATTGAGGAGGACTTGAATGTCTCCTTAGCTCAAGGTATAGCCTCATTTACTATAGTCATCGCATGCAATTTTAGTTTAAGATGTTGTCAAGTAAGCCAAGCTCTGCATTATAAGGGTGGTCTTTGTATGAAGTGATAGTCATGCAATATAGACTTCTGATAGAACCCAAACTTTCAATATCCATTAGAGTATGTTATTATGAAAGGGACCTCATGTACTTTAGATAATCAAGTACTTATGTTTGTAAACGATGTGTTATTAATAAGATATTTATGATAAGTTCAATTTATTTATTTATATGTTTACCTTATTTATTTATTTATATGTTTACCTTATTTATTTATTTATATGTTTACCTTATTTATTTATTTGTATGTTTACCTTATTTATTTATTTATATGTTTACCTTATTTATTTATTTATATGTTTACCTTATTTATTTATTTATATGTTTGCCTTAAAAAGAAATCTTATCAATGGGATTTAACCTAGTTCATTGGCTATGAGCAACTTTTTTTTCCCTTGTAATGCAATCAGTAATGTTGGACTTTGCAGTATAGGATATCGGGTCTGAATTTGTACCAATACATAGATCTGTGTACTTAATATCAGTATTTTAAGATGCATCCTAGGTGCACTAGGTAACTTGAGGGTGCGCGACTTTTGTACTGAATTGTTGATTTAAGAGCTATGCCTGAGTTGGTATTCTCACTAAGGTGTGCCTATAAGTTTATATTTTAAACAATCTTTATTATACAATTTTTTATTTTTTAGTTTCTCAAAAGACTATATTTTAACAATGTCGTTAAAAACTCATTTCTTTTAAGTTTTCATTATTTATAAGACTATTTTATGGATACATGTCTTTCTTTATACTTTTCTGGTTTGTTCTTGAAAAACATTACTTATTTTTTGTTTTCCATTTTCTTGAAAAACATTCCTTATATTTTTGCTTTGCATTTACTTTCTAGACATCTATTGCGTCTTCAGTGCATCGTGCAGTTTACAATACACTATTACACAAAGATACTATTAGTATTATTTATTCAGATACTATGAATTATAGGCATCTCATTTTATACAATAGTAGAATTCATGAGGATGCCAAATCATTAGGTAATGCATTCAGGTGCCTTCTTCTTGGTTAAGGTCATGGCTTTGGTCTCCCAAAAAAAATTTGAAATCTAATACCAAATAGGAACTAAACTCAAAATTTAAGGCTATAAGGATTTAATGGTTACTAAATTCAAAACTTGGGTAATGTACCATTATGAAACCAAGCCACCAAAGTGGTTTTTTCTATGGCCTTACTTGAACAGGATCTGTTAGGTTGTACAACTGTGACCTTGAGCTCTAAATGGTAACTGTGTGCAAGTACTCCATAAGCATTTAATGTTGTTTTTATTATTATTATTTATTTATTTTTGTTTCATAATCATAGCTTCAAACAAACTGTTTGTAAAAAAAAATATCTTCTGAAGTGTTGACTGAGGGTTTTGTAGATGAGTGGGCTAGTTCTGTTTCTTTTTTCATCGTGTTGGCATGAACTTATATCTTAGTTAGCAAGTTGCAAATTTTCTTGTAAGTAGGACTGAGCTTGAAGTTTGGGTGGTTATGGTATCTCTATAGCCAAAATAATATTCGAGGGTAGTAAAGTATAAAGGGTTACATATCATACTTTATCACAATAATGTGATGTACCCCCATTCATGATGGCATGACTAAAAAAATAGAAATCCATAGACACCTTATGAAGTGCTTTGTATTGGAGTCATTACAGGTGGCTGAATTTTCATGGAAGGATTGCAAAGATTCTACTTTTGTAGCCTTAGCTAGCAAGCTAAGAATGAATGATAAAGATCTTTAATCCAACTTGACTGTTGGAGCTGTAGCATTGGTCAAGTCAATGGGACATCTTCCCATTTTTATTGCATTCATACCCAAATTTTATTTCATACACCTTATTTGTAAATGCCTAATTTCTTCTCTCGATAGATTTTCATGCAGTGATCATTCTATTCCCTGGCATATTTGGTTTTGGTAAATAGAATTCCCTGTGCTATAATTTTATGTATGTATAAACGTACTGTAAGAGCAATTTTCTCTGTACTTCCTTCCCAATCTAGGAACTCAACCAAGATCTGCATTGCTGGACGACCTTCAAGATCAGGAAACTGTAATTCAAGAATGTATTAGGCAACTTGAAGGTGTTGAGGCAACTAGGGCTTCTTTGGTTTCCTTACTTGTAGAAGCGCTTCAGGACCAAGTAACTTTCCTGCATCTTTTATTTTTCCTCCAATAATTTAAACCCATTGCAGGCCTCCTCTATATTGTAGTTGATTACTCTTTGGAAAATCACAGGAATCCAAGCTGGAACTAGTTCGCAATCAGTTGCAGGTAAGATTAACCACTTTGTATATTTTCTGTTTTTCAAGTAACTAACAAGAGTTTAGGTTTGGGATCAACTGTTGGCTTAAATTAGTTTTGGATGGGTCTGACATGCGCTTTATACCTTGAAACGTTTGAATATGGTATAGGATAATTGGATATGTCAAAACATTGAACTTTGGTACACCTAGAAGCATTTAAATCAGAGTTATAATCTTCTTTCATTGTAGACACATGGTGGAGGTGGACAGACACCCTTTGACTCTTGAGCAAATTAACACAATAATATACTAACTAATAGGGTACAATCCATGGTGGCCACCTACCTAAGAGTTAATTTTGTATGAGTTTTCTTAACACCCAAATGTTGTAGGGTTAGTCAGGTTGTCTCGTGAGATTAGTCAAAGTGCACGTAAACCAAATGTTGTAGGGTTAGTCAGGTCGTCTCGTGAGATTAGTCAAAGTGCACGTAAGCCAAATGTTGTAGGATTAGTCAGGTCATCTCGTGAGATTAGTCAAAGTGCACGTAAACCAAATGTTGTAGGGTTAGTCAGGTTGTCTCGTGAGATTAGTCAAAGTGCACGTAAGCTGGTTCGAATACTCGTAGATATTAAGAAAGAAAAAAACAATAATATACTTAAACAAGAAATGGGAGAAAAATCAGACTGAATGAACTTGTTTGATGTGCTAACTATGTGGGCACATTTGATTTTGACGTTCTTTCTAAGATATTTGATTTCTTTAGAAAGTTACAAATAATGGTGAACTTAAACCCATTGATCTTTGGAATCCGCTTCAAGATACAATAACTAGTTACCAATCTTTGGATGAAGGCCCTCGTAGTTTTTAGCCTTAAATTTTCTTTGTATCATCATTTAGATATTAGTGCTTGATCGATATTGTTAGTAAGGAAAAAGATACAGTGAAAATCATTCATATTTTTCATTAATGTAAATTCAAGTATGGAACTTATGCTTGATTGGCTTCTATGCTAGATTTCAATGCTTTAGTCTGCATCTAGATAAGAAAAAGATGAAGCTATTGTTTGCCTCGTATCCACTAACATCACTTCTGCTCGTTCATGTGTTATGAATGAGTTTCAATGTCAACATTACAGTTCAATCGAGTAGGAGTTCAATCATTTGGGAAATCCACTTTCAGCAACCAGTGAAACATTTTATGTCAATTTGCTCAGTCATTGGTAGCCTATTTTAGGCTGTAGTAATTAAATTGTACTGTAACTTTCTTTTTTATGTGAACGGATAAGAAATTGGGTCATGTCTAATAAAATTTTTAGACACTGTTTTGTTAGGAAAATTTCTGAGAACGCTTTCTATTATAAATGCATTATTAGATTAAACTTCAGTTGGAACCACCTGAATTAGAACTAATGAGGTGGCTTTTTGCAAAGGTAGTCTTGTAAATCGGAAAGGGTAACATACGTAAAAGATTATCATGGTCAAGAACTTAATTCAGGGGAGAGAGCACAGTTGATAGAGATGGACAGTCAGTATCTGATATATATTAAAAACATAGCAGTAAACATAAATTAAAACGAACAAATATAATTAAGTTCTAATTCAGAAGGTTCCCTGCCAGTCACATGGACGGAGATCTCATATTAAATATATTTTATATGCTTGGAATGCAAAATGATTAGTTATAGAGTTCTGTATTTTCTAACTTCAGTTTGCTTATGTAGATCGGAAATTATTGTTTATGAACCTGTAGGTGGCTCGATCTCAAATTGAGCTAGCAAGTAATGTTCGGAAAAGATTTACTTCGACAACGGTTCCTGGTCCTTCAGCTACTACTGTTGATCTTCTGACAGAGATGACCCATGCGACGGATTCTAAGTTATCTTCTGTTCAACAAAACATAATCTCTTCTCAGTCCCCTCTTATCCAGGCTATGGGGTCGTTTCCTGGTCCTAAAACCAGTGAAGAGGAAAACAAGAGAGCTGCTGCCGCTGCTGTTGCTGCAAAGTTGGCTGCTTCTACATCATCGGCACAGATGCTTACCTCTGTTCTTTCATCACTCGTTGCAGAAGAAGCTGCTTCCATGAATGGTGGCCTAAAATCATCTGGGTTCTCTTCATTGTCCCTATTCTCTCCTGAAAAACGACAGAAACTTGAGAAGCCCATGCCTATTTCTGATGTCAGCAGTTCAGATGGCGCTGGCGCATCATTTGTTGCACCTATGCAACAACAAATGACGAGTATGCCACTTGCACAATCAGCAAATGGGCAACCTGTATCCCAGGCAAACCCGAGTCAAGCTTCATTTGCGCCACCACCTCCGCCAGTGCCACCATCTCTATCCTCAACTCCACCAGTGAATCAATATGCACAGTCTGGTGGATTAATGGGTGTATTACCATATAATTTCGGAGCATATTCTCTACCACCTCCACCTCCTTTGCCTCCACATATTGCGATGGGTTTGAGTAGGCCGACATCTCAGCCACCTCCGCAACAGCTGCAGCAGCCACAGCAGTCACAGCCAGCTTCATCAGGATTTTATCGACCACCAGGTATAGGCTTTTATGGGCAAGGCCAGCAGTCGACGCCACCCCCGGTCCCTAGGCAGTAAGTTCCCAGGTAGAATTTACTTGGGTCAAACTTTCACTTAAAAGGGTTAAATATCTTCAATGGTTTACATTAGCCATACACATTTCTACCTGCCAACTGAGTTCATTTCAGAATTTGTATTATCATGTAAATTAGTAGATTATTTTTTTTTTTTCGTTAGTTAATTTGTAGAAGGTTTAGTATATCTTCTCCGGCCAACAATTTTAAAGAGCATGTTGCAGCTGAGGTTCGTCTGTGCTGATGGAAAATTTAGGTGGCTACATTTAGGCTTTTCCAATGTGTTACTATAAAAGTCCGGAAGCTCGACGAATTCTCGACTACGTCAAAATTTTACTGTGGCTAGGTAAGCTTTTCTCCCATATGTTTGGAAGCTTGTTAGCGTACTGCCTAGAAAGATTTTTAGTTGACATGTTAGATTCAGCTTTGAAGACCTTGTTGCCCTTTAAAATCTGCATGGATAGAGTGGCCAACTACACTTATTTTGGATAGCAATAACAGGATGATACTGGTCTGTAATATAAATTTAGTGATAGGCCATGGAAATTATAAGTTAAAATACATCAGTGCCACTGTTTTGTAATCTGTACCCCTTGTTTTCTTATTCAGTAGAGAACTTTTATTTTACAATAAATTGTTCCTCAATCTTCTT

Coding sequence (CDS)

GGTGCAATTGTTATGATTCTGTTTATCTTTGATATCAAATTAGCTTTATCAAAATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTCGAAACATGGGATAAATTATTCAACTCATCGCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCAAATGATATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAACGAATTCTGGAAAGTTCTTCCTGGTGCCCTCAAGTATGTATACGATCATGGCGACGAAAGTGGAAAGAAAGCAGTTGCCAGACTTGTCAATATTTGGGAAGAAAGGAAGGTTTTTGGTTCTCGGGGGCAGAGTCTTAAGGATGAAATGCTTGGTAAAAATCCACCTCCAACTCCGTTACCCAGCAGCAATGGAAAGAGTTCAAATCCTATAAAAATAGTGAAGAGGGATGCTCACTCTGTGAGAATTAGAAGATTCTTACTGCATTTCAATCTGTCCTTGATGAGCATCTGA

Protein sequence

GAIVMILFIFDIKLALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGKSSNPIKIVKRDAHSVRIRRFLLHFNLSLMSI

Homology

[Close]

BLAST of Cucsat.G13186.T14 vs. ExPASy Swiss-Prot
Match: Q9NQG5 (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens OX=9606 GN=RPRD1B PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-20
Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 16  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 75
           LS W I HRK A  IV  W +    ++  ++++FLYLAND++QNS+RKG EF  EF  VL
Sbjct: 26  LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVL 85

Query: 76  PGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRG-QSLKDEML-GKNPPP 126
             A  +V    DE  KK + RL+NIW+ER V+G    Q LK  M   K+PPP
Sbjct: 86  VDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSPPP 137

[Close]

BLAST of Cucsat.G13186.T14 vs. ExPASy Swiss-Prot
Match: Q9CSU0 (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus OX=10090 GN=Rprd1b PE=1 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-20
Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 16  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 75
           LS W I HRK A  IV  W +    ++  ++++FLYLAND++QNS+RKG EF  EF  VL
Sbjct: 26  LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVL 85

Query: 76  PGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRG-QSLKDEML-GKNPPP 126
             A  +V    DE  KK + RL+NIW+ER V+G    Q LK  M   K+PPP
Sbjct: 86  VDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSPPP 137

[Close]

BLAST of Cucsat.G13186.T14 vs. ExPASy Swiss-Prot
Match: Q0P5J9 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus OX=9913 GN=RPRD1A PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 5.9e-19
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 16  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 75
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 76  PGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRG-QSLKDEMLGKNPP 125
             A K+V    DES KK + R+++IWEER V+ +   + LK  + G   P
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKP 135

[Close]

BLAST of Cucsat.G13186.T14 vs. ExPASy Swiss-Prot
Match: Q96P16 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens OX=9606 GN=RPRD1A PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.9e-19
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 16  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 75
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 76  PGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRG-QSLKDEMLGKNPP 125
             A K+V    DES KK + R+++IWEER V+ +   + LK  + G   P
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKP 135

[Close]

BLAST of Cucsat.G13186.T14 vs. ExPASy Swiss-Prot
Match: Q5R8Y3 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Pongo abelii OX=9601 GN=RPRD1A PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.9e-19
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 16  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 75
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 76  PGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRG-QSLKDEMLGKNPP 125
             A K+V    DES KK + R+++IWEER V+ +   + LK  + G   P
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKP 135

[Close]

BLAST of Cucsat.G13186.T14 vs. NCBI nr
Match: XP_008443180.1 (PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis melo])

HSP 1 Score: 281 bits (719), Expect = 2.13e-89
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 15  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 74
           +LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 75  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 134
           LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK
Sbjct: 87  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 146

Query: 135 SSNPIKIVKRDAHSVRIR 152
           SSNPIKIVKRDAHSVRI+
Sbjct: 147 SSNPIKIVKRDAHSVRIK 164

[Close]

BLAST of Cucsat.G13186.T14 vs. NCBI nr
Match: XP_004136608.1 (regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >XP_031739391.1 regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >KAE8651160.1 hypothetical protein Csa_001803 [Cucumis sativus])

HSP 1 Score: 281 bits (719), Expect = 2.24e-89
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 15  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 74
           +LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 75  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 134
           LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK
Sbjct: 87  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 146

Query: 135 SSNPIKIVKRDAHSVRIR 152
           SSNPIKIVKRDAHSVRI+
Sbjct: 147 SSNPIKIVKRDAHSVRIK 164

[Close]

BLAST of Cucsat.G13186.T14 vs. NCBI nr
Match: KAG7027736.1 (Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279 bits (713), Expect = 1.03e-88
Identity = 139/152 (91.45%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   GAIVMILFIFDIKLALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNS 60
           GA VM LF FDI+LALS+WCISHRKKAKQIVETWDKLFNSSQK+QRVSFLYLANDILQNS
Sbjct: 3   GATVMNLFFFDIELALSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLANDILQNS 62

Query: 61  RRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLG 120
           RRKGSEFVNEFWKVLP +LKYVYDHGDESGKKAVARLV+IWEERKVFGSRGQSLKDEMLG
Sbjct: 63  RRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFGSRGQSLKDEMLG 122

Query: 121 KNPPPTPLPSSNGKSSNPIKIVKRDAHSVRIR 152
           KNPPP  LP+SNGKSSNPIKIVKRDAHSVRI+
Sbjct: 123 KNPPP--LPNSNGKSSNPIKIVKRDAHSVRIK 152

[Close]

BLAST of Cucsat.G13186.T14 vs. NCBI nr
Match: XP_038904543.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hispida])

HSP 1 Score: 271 bits (692), Expect = 2.53e-85
Identity = 131/138 (94.93%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 15  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 74
           +LS+WCISHRKKAKQIVETWDK FNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 75  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 134
           LPGALKYVYDHGDE GKKAVARLVNIWEERKVFGSRGQSLKDEMLGK PPPT LPSSNGK
Sbjct: 87  LPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKTPPPTQLPSSNGK 146

Query: 135 SSNPIKIVKRDAHSVRIR 152
           SSNPIKIVKRDAHSVRI+
Sbjct: 147 SSNPIKIVKRDAHSVRIK 164

[Close]

BLAST of Cucsat.G13186.T14 vs. NCBI nr
Match: XP_022152017.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia] >XP_022152018.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia])

HSP 1 Score: 268 bits (684), Expect = 3.61e-84
Identity = 131/138 (94.93%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 15  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 74
           +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 75  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 134
           LPGALKYVYDHGD+SGKKAVARLV+IWEERKVFGSRGQSLKDEMLGKNPPP  LPSSNGK
Sbjct: 87  LPGALKYVYDHGDDSGKKAVARLVDIWEERKVFGSRGQSLKDEMLGKNPPP--LPSSNGK 146

Query: 135 SSNPIKIVKRDAHSVRIR 152
           SSNPIKIVKRDAHSVRI+
Sbjct: 147 SSNPIKIVKRDAHSVRIK 162

[Close]

BLAST of Cucsat.G13186.T14 vs. ExPASy TrEMBL
Match: A0A1S3B7H0 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo OX=3656 GN=LOC103486842 PE=4 SV=1)

HSP 1 Score: 281 bits (719), Expect = 1.03e-89
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 15  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 74
           +LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 75  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 134
           LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK
Sbjct: 87  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 146

Query: 135 SSNPIKIVKRDAHSVRIR 152
           SSNPIKIVKRDAHSVRI+
Sbjct: 147 SSNPIKIVKRDAHSVRIK 164

[Close]

BLAST of Cucsat.G13186.T14 vs. ExPASy TrEMBL
Match: A0A6J1DF20 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica charantia OX=3673 GN=LOC111019832 PE=4 SV=1)

HSP 1 Score: 268 bits (684), Expect = 1.75e-84
Identity = 131/138 (94.93%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 15  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 74
           +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 75  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 134
           LPGALKYVYDHGD+SGKKAVARLV+IWEERKVFGSRGQSLKDEMLGKNPPP  LPSSNGK
Sbjct: 87  LPGALKYVYDHGDDSGKKAVARLVDIWEERKVFGSRGQSLKDEMLGKNPPP--LPSSNGK 146

Query: 135 SSNPIKIVKRDAHSVRIR 152
           SSNPIKIVKRDAHSVRI+
Sbjct: 147 SSNPIKIVKRDAHSVRIK 162

[Close]

BLAST of Cucsat.G13186.T14 vs. ExPASy TrEMBL
Match: A0A6J1J690 (regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481606 PE=4 SV=1)

HSP 1 Score: 267 bits (682), Expect = 3.48e-84
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 15  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 74
           +LS+WCISHRKKAKQIVETWDKLFNSSQ+EQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKLFNSSQQEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 75  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 134
           LPGALKYVYD GDESGKKA ARLVNIWEERKVFGSRGQ+LKDEMLGK PPPTPLPSSNGK
Sbjct: 87  LPGALKYVYDQGDESGKKAAARLVNIWEERKVFGSRGQNLKDEMLGKYPPPTPLPSSNGK 146

Query: 135 SSNPIKIVKRDAHSVRIR 152
           SSNP KIVKRDAHSVRI+
Sbjct: 147 SSNPKKIVKRDAHSVRIK 164

[Close]

BLAST of Cucsat.G13186.T14 vs. ExPASy TrEMBL
Match: A0A6J1F335 (UPF0400 protein C337.03-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441698 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 2.82e-83
Identity = 127/138 (92.03%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 15  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 74
           +LS+WCISHRK+AKQIVETWDKLFNSSQ+EQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKRAKQIVETWDKLFNSSQQEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 75  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 134
           LPGALKYVYD GDE+GKKA ARLVNIWEERKVFGSRGQ+LKDEMLGK PPPTPLPSSNGK
Sbjct: 87  LPGALKYVYDQGDENGKKAAARLVNIWEERKVFGSRGQNLKDEMLGKYPPPTPLPSSNGK 146

Query: 135 SSNPIKIVKRDAHSVRIR 152
           SSNP KIVKRDAHSVRI+
Sbjct: 147 SSNPKKIVKRDAHSVRIK 164

[Close]

BLAST of Cucsat.G13186.T14 vs. ExPASy TrEMBL
Match: A0A6J1I2G4 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita maxima OX=3661 GN=LOC111470291 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 9.39e-83
Identity = 129/138 (93.48%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 15  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 74
           +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 75  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 134
           LP +LKYVYDHGDESGKKAVARLV+IWEERKVFGSRGQSLKDEMLGKNPPP  LP+SNGK
Sbjct: 87  LPVSLKYVYDHGDESGKKAVARLVDIWEERKVFGSRGQSLKDEMLGKNPPP--LPNSNGK 146

Query: 135 SSNPIKIVKRDAHSVRIR 152
           SSNPIKIVKRDAHSVRI+
Sbjct: 147 SSNPIKIVKRDAHSVRIK 162

The following BLAST results are available for this feature:

BLAST of Cucsat.G13186.T14 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NQG5	1.1e-20	47.32	Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens OX=9...	[more]
Q9CSU0	1.1e-20	47.32	Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus OX=1...	[more]
Q0P5J9	5.9e-19	41.82	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus OX=991...	[more]
Q96P16	5.9e-19	41.82	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens OX=9...	[more]
Q5R8Y3	5.9e-19	41.82	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Pongo abelii OX=9...	[more]

BLAST of Cucsat.G13186.T14 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443180.1	2.13e-89	98.55	PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cuc...	[more]
XP_004136608.1	2.24e-89	98.55	regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >X...	[more]
KAG7027736.1	1.03e-88	91.45	Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita ...	[more]
XP_038904543.1	2.53e-85	94.93	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hisp...	[more]
XP_022152017.1	3.61e-84	94.93	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica char...	[more]

BLAST of Cucsat.G13186.T14 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B7H0	1.03e-89	98.55	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo...	[more]
A0A6J1DF20	1.75e-84	94.93	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica ch...	[more]
A0A6J1J690	3.48e-84	93.48	regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X1 OS=C...	[more]
A0A6J1F335	2.82e-83	92.03	UPF0400 protein C337.03-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1I2G4	9.39e-83	93.48	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita ma...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006569	CID domain	SMART	SM00582	558neu5	coord: 2..119 e-value: 1.9E-29 score: 113.8
IPR006569	CID domain	PFAM	PF04818	CID	coord: 15..109 e-value: 6.8E-31 score: 107.0
IPR006569	CID domain	PROSITE	PS51391	CID	coord: 1..123 score: 34.20245
IPR008942	ENTH/VHS	GENE3D	1.25.40.90		coord: 12..120 e-value: 2.7E-34 score: 119.9
IPR008942	ENTH/VHS	SUPERFAMILY	48464	ENTH/VHS domain	coord: 14..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..138
None	No IPR available	PANTHER	PTHR12460:SF21	RNA POLYMERASE II-BINDING DOMAIN PROTEIN	coord: 15..152
None	No IPR available	PANTHER	PTHR12460	CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN	coord: 15..152
None	No IPR available	CDD	cd16981	CID_RPRD_like	coord: 16..119 e-value: 1.22567E-51 score: 159.283

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G13186	Cucsat.G13186	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13186.T14.E1	Cucsat.G13186.T14.E1	exon
Cucsat.G13186.T14.E2	Cucsat.G13186.T14.E2	exon
Cucsat.G13186.T14.E3	Cucsat.G13186.T14.E3	exon
Cucsat.G13186.T14.E4	Cucsat.G13186.T14.E4	exon
Cucsat.G13186.T14.E5	Cucsat.G13186.T14.E5	exon
Cucsat.G13186.T14.E6	Cucsat.G13186.T14.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13186.T14.C1	Cucsat.G13186.T14.C1	CDS
Cucsat.G13186.T14.C2	Cucsat.G13186.T14.C2	CDS
Cucsat.G13186.T14.C3	Cucsat.G13186.T14.C3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13186.T14	Cucsat.G13186.T14-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031124	mRNA 3'-end processing
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0016591	RNA polymerase II, holoenzyme
molecular_function	GO:0000993	RNA polymerase II complex binding