Cucsat.G12854.T6 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G12854.T6
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionpentatricopeptide repeat-containing protein At1g14470
Locationctg1838: 5807084 .. 5808251 (-)
RNA-Seq ExpressionCucsat.G12854.T6
SyntenyCucsat.G12854.T6
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTTGGCCGGATCGCGGTGGAGTTTTGAGAGAGAGCAAAGCAACGGCGGAATGACGGTATTTCACTTCTTCAACTGTGCCATTCTCACTTTCGGTCCTCATGCTGTCTACTACTCCGCAACCCCCTTGTAAGGATCTCACTTTCTTCTTTTGATCTCTTCTTCCCAATACTGCCTTTTCTTGAAATTCTACTCTCTTTGCTTTCTTTGAATCCGAATTCGTCTGGAGCTCGTTTTAATATCGGACTGATTCTTTCTGTTGAAACCCCCTCTCTTTGCCTTTTTTCTTTTTTAAATGATTTCTTGATGTTTTGTTTGGGCTGTTCAATTTGCATCTGTATATCAGAGTTATCTTAGATAATCTGTTTAAAAACAAGTCTCAAATCTTGTAAACTACTGAAATGACTATCAAGATTTGATCCGGATGCCCCAATTCTGTTCTTTTGATGACATCAAATTGCAGTAATTAATTAGAGTAGTGGAAACGGGTTTCTATTGAAAGTGCAACGTTCTAATTTCTCCCATGTACGAATTGGTCGCCTTAGCTTCCAAAATAAGCAATATACGTCAGTTAAGACAATTCCACGGGCATCTTGTTCACAATTCCCTCCATTCTCATAACTACTGGGTTTCTCTGCTCCTCATTAACTGTACCCGTCTTCACGCTCATCCTGCCTATGTGGATTCTATTTTTACCTCCTCGCCGTCCCCCGATGCTTCTGTTTACAGTTGTATGCTCAAATATTACTCCCGCATGGGTGCGCACAATCAAGTGGTTTCCCTCTTCAAATGTACGCATTCTCTAAATCTCAGGCCTCAGCCCTTTGTTTACATTTACTTGATCAAGTTAGCTGGTAAGTCTGGCAATATGTTCCATGCTTATGTCCTGAAGTTGGGCCATATTGACGACCACTTCATCCGTAATGCTATCTTGGATATGTATGCTAAAAATGGCCAAGTAGATCTTGCCAGGAATCTGTTTGAGCAAATGGCTGAAAGAACTTTAGCGGACTGGAATTCAATGATTTCTGGCTGTTGGAAATCAGGAAATGAAACTGAAGCGGTTGTGCTGTTTAATATGATGCCTGCTAGGAATATTATTACATGGACCTCCATGGTTACTGGGTATGCCAAGATGGGGGACTTGGAGAGTGCTAGAAGGTATTTTG

Coding sequence (CDS)

ATGTACGAATTGGTCGCCTTAGCTTCCAAAATAAGCAATATACGTCAGTTAAGACAATTCCACGGGCATCTTGTTCACAATTCCCTCCATTCTCATAACTACTGGGTTTCTCTGCTCCTCATTAACTGTACCCGTCTTCACGCTCATCCTGCCTATGTGGATTCTATTTTTACCTCCTCGCCGTCCCCCGATGCTTCTGTTTACAGTTGTATGCTCAAATATTACTCCCGCATGGGTGCGCACAATCAAGTGGTTTCCCTCTTCAAATGTACGCATTCTCTAAATCTCAGGCCTCAGCCCTTTGTTTACATTTACTTGATCAAGTTAGCTGGTAAGTCTGGCAATATGTTCCATGCTTATGTCCTGAAGTTGGGCCATATTGACGACCACTTCATCCGTAATGCTATCTTGGATATGTATGCTAAAAATGGCCAAGTAGATCTTGCCAGGAATCTGTTTGAGCAAATGGCTGAAAGAACTTTAGCGGACTGGAATTCAATGATTTCTGGCTGTTGGAAATCAGGAAATGAAACTGAAGCGGTTGTGCTGTTTAATATGATGCCTGCTAGGAATATTATTACATGGACCTCCATGGTTACTGGGTATGCCAAGATGGGGGACTTGGAGAGTGCTAGAAGGTATTTT

Protein sequence

MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF
Homology
[Close]
BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot
Match: Q9M9R6 (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX=3702 GN=PCMP-A4 PE=2 SV=2)

HSP 1 Score: 183.7 bits (465), Expect = 2.2e-45
Identity = 94/213 (44.13%), Postives = 133/213 (62.44%), Query Frame = 0 

Query: 4   LVALASKISNIRQLRQFHGHL-VHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPS 63
           L A+AS+     QL Q H  L V NSL   +YW S ++  CTRL A   Y   IF S   
Sbjct: 9   LAAIASQALTFPQLNQIHAQLIVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDSVTF 68

Query: 64  PDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVL 123
           P+  V + M KY+S+M   N V+ L++      + P  F +  +IK AG+ G +F A V 
Sbjct: 69  PNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRFGILFQALVE 128

Query: 124 KLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVV 183
           KLG   D ++RN I+DMY K+  V+ AR +F+Q+++R  +DWN MISG WK GN+ EA  
Sbjct: 129 KLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACK 188

Query: 184 LFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
           LF+MMP  ++++WT M+TG+AK+ DLE+AR+YF
Sbjct: 189 LFDMMPENDVVSWTVMITGFAKVKDLENARKYF 221

[Close]
BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot
Match: Q9FFG8 (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.4e-22
Identity = 56/218 (25.69%), Postives = 107/218 (49.08%), Query Frame = 0 

Query: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHA-HPAYVDSIFTSSPS 63
           L++      N+ Q++Q HGH++   L    Y ++ L+   T+L      Y   +      
Sbjct: 52  LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111

Query: 64  PDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-----KSGNMF 123
            +  +++ +++ Y+  G  ++ ++++ C     + P  F +  L+K  G       G  F
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171

Query: 124 HAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNE 183
           HA   +L      ++ N ++DMY K   +D AR +F++M ER +  W  +I+   + GN 
Sbjct: 172 HAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNM 231

Query: 184 TEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
             A  LF  +P ++++ WT+MVTG+A+    + A  YF
Sbjct: 232 ECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYF 269

[Close]
BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot
Match: Q9CA54 (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.8e-22
Identity = 60/222 (27.03%), Postives = 109/222 (49.10%), Query Frame = 0 

Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCT-RLHAHPAYVDSIFTS 60
           ++  ++L +   N+R L Q HG  +   + + +Y+   L+++C   +     Y   +   
Sbjct: 5   IHHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLC 64

Query: 61  SPSPDASVYSCMLKYYSRMG-AHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-----KS 120
            P PDA +++ +++ YS     HN V    +      + P  F + ++IK        ++
Sbjct: 65  FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 124

Query: 121 GNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWK 180
           G   H   LK G     F+   ++ MY   G V+ AR +F++M +  L  WN++I+ C++
Sbjct: 125 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 184

Query: 181 SGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
             +   A  +F+ M  RN  +W  M+ GY K G+LESA+R F
Sbjct: 185 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIF 226

[Close]
BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-21
Identity = 57/219 (26.03%), Postives = 112/219 (51.14%), Query Frame = 0 

Query: 5   VALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAH---PAYVDSIFTSSP 64
           ++L      ++ LR  H  ++   LH+ NY +S L+  C  L  H     Y  S+F +  
Sbjct: 37  LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCI-LSPHFEGLPYAISVFKTIQ 96

Query: 65  SPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKS-----GNM 124
            P+  +++ M + ++        + L+ C  SL L P  + + +++K   KS     G  
Sbjct: 97  EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 156

Query: 125 FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGN 184
            H +VLKLG   D ++  +++ MY +NG+++ A  +F++   R +  + ++I G    G 
Sbjct: 157 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 216

Query: 185 ETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
              A  LF+ +P +++++W +M++GYA+ G+ + A   F
Sbjct: 217 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELF 254

[Close]
BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot
Match: Q9LXF2 (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-20
Identity = 60/209 (28.71%), Postives = 107/209 (51.20%), Query Frame = 0 

Query: 13  NIRQLRQFHGHLVHNSLHSHNYWVSLLLINCT-RLHAHPAYVDSIFTSSPSPDASVYSCM 72
           NIR L+Q H  +V N L S+   V  L+ + +  +     Y   +F   P PD S+ + +
Sbjct: 24  NIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHV 83

Query: 73  LKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK-----SGNMFHAYVLKLGH 132
           L+  ++     + VSL+       + P  + + +++K   K     +G  FH  V++ G 
Sbjct: 84  LRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGF 143

Query: 133 IDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNM 192
           + + +++NA++  +A  G + +A  LF+  A+     W+SM SG  K G   EA+ LF+ 
Sbjct: 144 VLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDE 203

Query: 193 MPARNIITWTSMVTGYAKMGDLESARRYF 216
           MP ++ + W  M+TG  K  +++SAR  F
Sbjct: 204 MPYKDQVAWNVMITGCLKCKEMDSARELF 232

[Close]
BLAST of Cucsat.G12854.T6 vs. NCBI nr
Match: KAE8651312.1 (hypothetical protein Csa_002264 [Cucumis sativus])

HSP 1 Score: 441 bits (1133), Expect = 4.64e-150
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 0 

Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF
Sbjct: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215

[Close]
BLAST of Cucsat.G12854.T6 vs. NCBI nr
Match: XP_004147828.2 (pentatricopeptide repeat-containing protein At1g14470, partial [Cucumis sativus])

HSP 1 Score: 441 bits (1133), Expect = 2.94e-148
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 0 

Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS
Sbjct: 9   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 68

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN+FHAY
Sbjct: 69  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAY 128

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA
Sbjct: 129 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 188

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF
Sbjct: 189 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 223

[Close]
BLAST of Cucsat.G12854.T6 vs. NCBI nr
Match: XP_008454670.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g14470 [Cucumis melo])

HSP 1 Score: 413 bits (1062), Expect = 1.12e-137
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0 

Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]
BLAST of Cucsat.G12854.T6 vs. NCBI nr
Match: KAA0057172.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK27155.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 413 bits (1062), Expect = 1.28e-135
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0 

Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]
BLAST of Cucsat.G12854.T6 vs. NCBI nr
Match: XP_038898615.1 (pentatricopeptide repeat-containing protein At1g14470 [Benincasa hispida])

HSP 1 Score: 390 bits (1002), Expect = 1.13e-128
Identity = 190/215 (88.37%), Postives = 201/215 (93.49%), Query Frame = 0 

Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           M EL A+ASKISNIRQLRQ HGHLV NSLHSHNYWVSLLLINCTRLHAHPAYV SIFTSS
Sbjct: 1   MSELGAIASKISNIRQLRQLHGHLVLNSLHSHNYWVSLLLINCTRLHAHPAYVASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSP+ SVYSCMLKYYSRMGAHN+VVSLF+C  SL+LRPQPFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  PSPNGSVYSCMLKYYSRMGAHNEVVSLFRCMQSLDLRPQPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGH+DD FIRNAILDMYAK GQVDLAR LF QMAERTLADWNSMISGCWKSGNET+A
Sbjct: 121 VLKLGHVDDQFIRNAILDMYAKYGQVDLARKLFAQMAERTLADWNSMISGCWKSGNETDA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFN MP RNIITWT+MVTGYAKMGDLE+ARRYF
Sbjct: 181 VMLFNEMPDRNIITWTAMVTGYAKMGDLETARRYF 215

[Close]
BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL
Match: A0A1S3BZ59 (pentatricopeptide repeat-containing protein At1g14470 OS=Cucumis melo OX=3656 GN=LOC103495023 PE=3 SV=1)

HSP 1 Score: 413 bits (1062), Expect = 5.41e-138
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0 

Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]
BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL
Match: A0A5D3DV14 (Transmembrane protein 147 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00350 PE=3 SV=1)

HSP 1 Score: 413 bits (1062), Expect = 6.19e-136
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0 

Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]
BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL
Match: A0A6J1BVU9 (pentatricopeptide repeat-containing protein At1g14470-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005962 PE=4 SV=1)

HSP 1 Score: 356 bits (914), Expect = 3.57e-122
Identity = 174/215 (80.93%), Postives = 188/215 (87.44%), Query Frame = 0 

Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           M +L A+ +KIS I QLRQ H HLV NSLHSHNYWVSLL+  CT L AHPAY  SIFTSS
Sbjct: 1   MSKLGAIVTKISYISQLRQLHAHLVLNSLHSHNYWVSLLITLCTHLQAHPAYAASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
            SP  SVYSCMLKYYSRMGAHN+VVS+F+C   L+LRP PFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  TSPSVSVYSCMLKYYSRMGAHNEVVSIFRCMQCLDLRPHPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHF+RNAILDMYAK GQVDLAR LFEQMA+RTLADWNSMISG WKSG E +A
Sbjct: 121 VLKLGHIDDHFVRNAILDMYAKYGQVDLARKLFEQMADRTLADWNSMISGYWKSGKEADA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWT+MVTGYAKM DLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTAMVTGYAKMKDLESARRYF 215

[Close]
BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL
Match: A0A6J1BWI0 (pentatricopeptide repeat-containing protein At1g14470-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005962 PE=3 SV=1)

HSP 1 Score: 356 bits (914), Expect = 8.09e-116
Identity = 174/215 (80.93%), Postives = 188/215 (87.44%), Query Frame = 0 

Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           M +L A+ +KIS I QLRQ H HLV NSLHSHNYWVSLL+  CT L AHPAY  SIFTSS
Sbjct: 1   MSKLGAIVTKISYISQLRQLHAHLVLNSLHSHNYWVSLLITLCTHLQAHPAYAASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
            SP  SVYSCMLKYYSRMGAHN+VVS+F+C   L+LRP PFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  TSPSVSVYSCMLKYYSRMGAHNEVVSIFRCMQCLDLRPHPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHF+RNAILDMYAK GQVDLAR LFEQMA+RTLADWNSMISG WKSG E +A
Sbjct: 121 VLKLGHIDDHFVRNAILDMYAKYGQVDLARKLFEQMADRTLADWNSMISGYWKSGKEADA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWT+MVTGYAKM DLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTAMVTGYAKMKDLESARRYF 215

[Close]
BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL
Match: A0A6J1FMC6 (pentatricopeptide repeat-containing protein At1g14470 OS=Cucurbita moschata OX=3662 GN=LOC111446708 PE=3 SV=1)

HSP 1 Score: 355 bits (910), Expect = 3.20e-115
Identity = 173/215 (80.47%), Postives = 188/215 (87.44%), Query Frame = 0 

Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MY+LVA+A+KISNI QLRQ H HLV NSL S NYWVSLLL  CTRLHAHP+Y  SIFTSS
Sbjct: 1   MYDLVAIATKISNISQLRQLHAHLVLNSLQSQNYWVSLLLTICTRLHAHPSYAASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           P P+ASVYSCMLKYYSRMGAH++VVSLF+C   L+LRP P VYIYLIKLAGKSGN+FHA 
Sbjct: 61  PYPNASVYSCMLKYYSRMGAHDEVVSLFRCMQCLDLRPHPSVYIYLIKLAGKSGNLFHAS 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHFIRNA+LDMYAK GQVDLAR LFEQM  RTLADWNSMISGCW SGNE +A
Sbjct: 121 VLKLGHIDDHFIRNAVLDMYAKYGQVDLARKLFEQMPNRTLADWNSMISGCWNSGNEADA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMP RN I+WT+MVTGYAK  DLESARRYF
Sbjct: 181 VMLFNMMPDRNTISWTAMVTGYAKRRDLESARRYF 215

The following BLAST results are available for this feature:
BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M9R62.2e-4544.13Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX... [more]
Q9FFG84.4e-2225.69Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX... [more]
Q9CA549.8e-2227.03Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX... [more]
Q9LN012.8e-2126.03Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q9LXF22.4e-2028.71Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX... [more]
BLAST of Cucsat.G12854.T6 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651312.14.64e-15099.53hypothetical protein Csa_002264 [Cucumis sativus][more]
XP_004147828.22.94e-14899.53pentatricopeptide repeat-containing protein At1g14470, partial [Cucumis sativus][more]
XP_008454670.11.12e-13793.02PREDICTED: pentatricopeptide repeat-containing protein At1g14470 [Cucumis melo][more]
KAA0057172.11.28e-13593.02pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK27155... [more]
XP_038898615.11.13e-12888.37pentatricopeptide repeat-containing protein At1g14470 [Benincasa hispida][more]
BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BZ595.41e-13893.02pentatricopeptide repeat-containing protein At1g14470 OS=Cucumis melo OX=3656 GN... [more]
A0A5D3DV146.19e-13693.02Transmembrane protein 147 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1BVU93.57e-12280.93pentatricopeptide repeat-containing protein At1g14470-like isoform X2 OS=Momordi... [more]
A0A6J1BWI08.09e-11680.93pentatricopeptide repeat-containing protein At1g14470-like isoform X1 OS=Momordi... [more]
A0A6J1FMC63.20e-11580.47pentatricopeptide repeat-containing protein At1g14470 OS=Cucurbita moschata OX=3... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 8..123
e-value: 1.7E-6
score: 29.5
coord: 124..215
e-value: 1.7E-21
score: 78.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 193..215
e-value: 1.9E-4
score: 21.5
coord: 134..159
e-value: 1.6E-4
score: 21.7
coord: 164..192
e-value: 4.9E-6
score: 26.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 193..215
e-value: 7.8E-4
score: 17.5
coord: 164..192
e-value: 4.9E-4
score: 18.1
coord: 134..158
e-value: 1.3E-4
score: 19.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 129..163
score: 9.437737
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 191..215
score: 9.20755
NoneNo IPR availablePANTHERPTHR47924:SF29PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 112..215
coord: 15..187
NoneNo IPR availablePANTHERPTHR47924PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 112..215
coord: 15..187

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G12854Cucsat.G12854gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12854.T6.E1Cucsat.G12854.T6.E1exon
Cucsat.G12854.T6.E2Cucsat.G12854.T6.E2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12854.T6.C1Cucsat.G12854.T6.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G12854.T6Cucsat.G12854.T6-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding