Cucsat.G1016.T2 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G1016.T2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	serine/arginine-rich splicing factor RS31-like
Location	ctg1: 6735178 .. 6739008 (+)
RNA-Seq Expression	Cucsat.G1016.T2
Synteny	Cucsat.G1016.T2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCAAATCTCCAAAATACCCTTTAGGGAGTAAGGGTGAAATCTGGGTCGACGGTAGTCTTGCATAGGAAAGTCAGATAATCGGACGGTGTGAAAGGAAGAACATCAAGAGTACCGGTTTTGCTTTGCGGTTTAAAATGAATCGATTTGCGTCATTAGGGCTTCTTTGAAAAAAGAAAAGACACAGCCTTTCTCTTCCTCTCTCTCCTAGGGTTTCTCTGTTCTGTTCGAATCCGAGAATCTCCAAGGTTTGTTCTCTTCAATCCTTTGGTAATTGATCCAATCGATCGTTTTACTTTTCGTTTCTGGTCAAACCCCCAAACTAAGTTATTTCCTTTCTTTCATCGTTTGATTCGAAAGAACATAGGTCGATTCATGTCGATGAAGTTGTTTATTATATATATATATACACACACATATATGGAGGAAGCTGTTATCTTTTTTTCACTTTTCGTCTGATTAACGTTCGAGCTTATTGATTTCGCTTTGTTTCGGTTTCGTATTTTCTACAGTACGATCTTTTGTAGCAACGATGAGGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGCTTATTCTCTAAATATGGGAGAGTTGAAAGGATCGACATGAAATCTGGTATATTGCAATTTCTTTAATGTAGTATGCCATTTTTAACAAAGATGTTAGTAAGTGGGTCATAACTTGTGCAGATTGTATTGTACGAAGGATCCCTTCTGTGGTCAGCTTTGAGTGAATTGATTGTCTTGAATATTGCTCTTAAAACCTTTTTTTTTTTGGTATTGCCATCGGTGGAATGAGTGTGTTGTAATGTGAAACTGTATTAAGATAATAGATGCACCAAAATGATCATGTTCATTTTGGTGTCATACGCATTGGATGTTGCATCTGGATTATTGATGTGTGTTTTAATCTGAAATCTTTGATGTTCTTGAAGAACCATACTCCTCTTGGCTCACAGTTGTCTGCATGTATGCATTGATGGTTAGTATTGTCAAGTATAATTCCTACTTTTAAGCTTCATAGCTTGGAGTTTTGTTTGGTTTTTTTTTTTTCTAACATTCTTACATGTGGATGTTTGTGCATTCACTGGAATCAGCTTACGTTTTCCTTGCTAACTGAAATTGCTTACTTTGGGCATGAGTTTTAAATGATCTTTATTTTCTGGAAAATATCCTTGGTCCTCACCCACCTTGCCTTACATCGTATGAAGTTATATGTAAATCAACGATTTTGGAAATTTTGGCTATAGGGTTTATTAAATTGTGGTATTATAGTGCAAGGCTTCTCCACAGATACTAACACTAAGTGTAAAAGTAATATCACGTTTTTATGATTAATACTAAAACCGATGTTTTTTACATAATAAAATCCAGTTCAGTGACATGGATGCATAGCTATTATGCTGTGAATATCATCCAATGGTCCATTTTTCTGATGAAAACTTAATGGCAGGCACAATTGCTATTTTTATGGGGAAAACCTCCATATAAGATGTTTCTTTTGACGCAGGAATTTCTTCTAAGGAAAATGAGCCAAGCTCCTATCTGGGCTCACCACCATGACACCATCTGTGCATTAAAATTAATTTGGAAGGAAACTTCCTGCTTGCCTGCTTACCTTCACCTACAGATAGCATCATCCTGATTTTTCTTCAATCAATCATTCGTCATTCATCTACCTCATCACTTAAGTTGCAATACACCAGAATCGTCTTAATGGATTGATCTTTATCTCATGCCTCATCAATTAAGTTGCAATTCATCAGAATCGTGTTAATGGATTGATCTTTATCTCATGCCTTGCCTATCTATCACCACTGATCATAGGACATCACTGAAATCTGATCATGCCTTCCATATGATAATAGTGGCTGAATGAAATCTATCATGCCTTCCATTTGATAATAGTGGCTGAATGAAATCTGTCATGCCATGCCTTCCATATCTGAACTCGTGCTGTGTGAAGGTGAAGGATAGTTGAATTTTTGGATTAAAACCTTAAGTAGGCAACCATCTTAGTCCATCATGCAACGTCTCTACCGCTATATGTGCATCAGTCCTCCCATATTTGCAGGTGTTGTATTTTTTATAGTTTATCCCAGGGAGAGAATTCAAGGGGCTGAGTGACAATACCTGCTTAATGGATGATGCTTCAACAGCTTACCAGTTTTGTATGTCTAATTGTTATTATTTGGCAGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCCATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGGCGCAGATTGTCTGTGGAATGGGCCAGGGTAGACCTCTCTCACTACGTTTTTCTGTGCCCTTCGTTCTTCCTTTTGAGTTTATGCATGTTAGAAGCTGTTTTTTTTTTTTCATGATTAGTAGATAGGTATTTTGTTCTAACTTTTGGGTTGGGTTGGTTTAGGGTGAACGAGGTCGTCATCGCGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATAAATTTCGACCCCATACGTACAAGAGTACGTGATATTGAAAGACACTTCGAACCTTATGGGAAAGTTCTCAATGTTCGGATCAGAAGGAACTTTGCATTTGTACAATTTGAAACGCAGGAGGATGCCACAAAAGCCCTTGAGTGTACCCACATGAGGTAAGCTTTGTCTTGATTCTCCTGCATGCGTGCTCTTTCTATTTGGTGTATTTATTTTCTTCTCTCTTATGGACGTGAAGTATTTGTACTGTGCCTTATAATTTTGCAGCAAGATACTAGACAGGGTTGTATCAGTTGAATATGCTTTGAGGGATGATGGTGAGAGGGGTGATCCTTTTGATGAAAGCCCTCGAAGAGCAGGTGGTTATGGGCGACCAGGGGATAGTCCCTACCGGAGGTCTCCAAGTCCGGTGTTTCGCCGTCGACCAAGTCCTGACTATGGGCGAGCTCATAGCCCTGCTTATGACAGATATAATGGACCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAATCGAAGCCCTGAATACGGTGGTAGATTTCGCAGGTATTTATTGTTCTTTGATAGTTTGCACAGCCTGCCTTTTGAGTTACCATAGCTTGTAGTTGAAGCTAACTGTCCGTTTTCCTGATGTCTTTGTTGGCAGCCGTTCACCCATTCGAAGGTCAAGAACCTGAAGGAAATCTATTGTTGAATTTTCAGTAGTTATGTTCTTAGGTTTAGGTCTGTGGAGTGTGTTAAGAGATGGTTACAAGTTCCTGTACAACCCTCGTATTTTTAACTCTTTGGAAAAACAACTGTTGGTAGATTTGAGATGTTGAAGGAAACACTTTCTATCTGTTTTTAACTAGTGGGTTTTATCCAACAAGTTCCGGCTATCACGTCTTCCCAATTGTTCACTTATCAACAATCAAATCCAGCATCAATGCAATTGAAGTGTTAATTCCTGTATCGAAATATAGGGGTTTCTACAAATATTTTGCATTGATTTTGAATATGCTAGAAAATACAGTTTTGATTACTTTGTATCATTGATAGACGGGTTTGAAGAAATTATAATCTATCTCTTATGGCTCAACCTTCATAAATTGAAGGTGTTTGAAGGATAAGGTGGCAGTAGAGATTTTAATGTAGATGTAAGCAAAACAGTGCAATAGGTCCCATCTTAATTTGCCTCTCCATCAATCTGAATGGTCACCTGCTTCTTCTTTCAGTCTCTCTGAATGGCCAAACTTCTTTGAGTGTTACATTTTGTGTTCATTGCATGCATATAAGTTTCTTATATTATGT

Coding sequence (CDS)

ATGGATGATGCTTCAACAGCTTACCAGTTTTGTATGTCTAATTGTTATTATTTGGCAGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCCATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGGCGCAGATTGTCTGTGGAATGGGCCAGGGGTGAACGAGGTCGTCATCGCGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATAAATTTCGACCCCATACGTACAAGAGTACGTGATATTGAAAGACACTTCGAACCTTATGGGAAAGTTCTCAATGTTCGGATCAGAAGGAACTTTGCATTTGTACAATTTGAAACGCAGGAGGATGCCACAAAAGCCCTTGAGTGTACCCACATGAGCAAGATACTAGACAGGGTTGTATCAGTTGAATATGCTTTGAGGGATGATGGTGAGAGGGGTGATCCTTTTGATGAAAGCCCTCGAAGAGCAGGTGGTTATGGGCGACCAGGGGATAGTCCCTACCGGAGGTCTCCAAGTCCGGTGTTTCGCCGTCGACCAAGTCCTGACTATGGGCGAGCTCATAGCCCTGCTTATGACAGATATAATGGACCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAATCGAAGCCCTGAATACGGTGGTAGATTTCGCAGCCGTTCACCCATTCGAAGGTCAAGAACCTGA

Protein sequence

MDDASTAYQFCMSNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT

Homology

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BLAST of Cucsat.G1016.T2 vs. ExPASy Swiss-Prot
Match: P92964 (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2)

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-77
Identity = 161/230 (70.00%), Postives = 178/230 (77.39%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +G+AFVYFEDERDAEDAIR LDN PFGY++RRLSVEWA+GERGR R  +K+ +N +PTKT
Sbjct: 35  SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 138
           LFVINFDPIRT+  DIE+HFEPYGKV NVRIRRNF+FVQFETQEDATKALE T  SKILD
Sbjct: 95  LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILD 154

Query: 139 RVVSVEYALRDDGERGD-PFDESPRRAGG--YGRPGDSPYRRSPSPVFRRRPSPDYGRAH 198
           RVVSVEYAL+DD ER D     SPRR+    Y R     Y R PSP   RRPSPDYGRA 
Sbjct: 155 RVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRAR 214

Query: 199 SPAYDRYNGP--YERRRSPDYGRNRSPEYG-------GRFRSRSPIRRSR 237
           SP YDRY GP  YERRRSPDYGR RS +YG        R+RSRSP+ R R
Sbjct: 215 SPEYDRYKGPAAYERRRSPDYGR-RSSDYGRQRSPGYDRYRSRSPVPRGR 263

[Close]

BLAST of Cucsat.G1016.T2 vs. ExPASy Swiss-Prot
Match: Q9ZPX8 (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.3e-75
Identity = 159/230 (69.13%), Postives = 179/230 (77.83%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRP 78
           +G+AFVYFEDERDAEDAIR  DN  FGY RR+LSVEWA+   GERG+ RDG K+++NQRP
Sbjct: 35  SGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRP 94

Query: 79  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSK 138
           TKTLFVINFDPIRTR RD+ERHFEPYGKVLNVR+RRNFAFVQF TQEDATKAL+ TH SK
Sbjct: 95  TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 154

Query: 139 ILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAH 198
           +LD+VVSVEYALR+ GER D +  S R             RRSPSPV+RRRPSPDY R  
Sbjct: 155 LLDKVVSVEYALREAGEREDRYAGSRR-------------RRSPSPVYRRRPSPDYTRRR 214

Query: 199 SPAYDRYNG--PYERRRSPDYGRNRSPEYG-------GRFRSRSPIRRSR 237
           SP YDRY G  PYERR+SPDYGR RS +YG       G  RSRSPI+R+R
Sbjct: 215 SPEYDRYKGPAPYERRKSPDYGR-RSSDYGRARARSPGYDRSRSPIQRAR 249

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BLAST of Cucsat.G1016.T2 vs. ExPASy Swiss-Prot
Match: P92966 (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2)

HSP 1 Score: 214.9 bits (546), Expect = 9.6e-55
Identity = 121/221 (54.75%), Postives = 146/221 (66.06%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER---GRHRDGSKSMANQRP 78
           AGFAFVY EDERDAEDAIR LD   +G   RRL VEW + +R   GR     +S +  RP
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRP 94

Query: 79  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSK 138
           +KTLFVINFD   TR RD+ERHFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK
Sbjct: 95  SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSK 154

Query: 139 ILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAH 198
           ++D+V+SVEYA++DD  RG+ +    RR     R      RRSPSP  R R SPDYGR  
Sbjct: 155 LMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDR-----RRRSPSPYRRERGSPDYGRGA 214

Query: 199 SPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSR 237
           SP   +       R SPDYGR R        RS SP +R+R
Sbjct: 215 SPVAHK-----RERTSPDYGRGR--------RSPSPYKRAR 237

[Close]

BLAST of Cucsat.G1016.T2 vs. ExPASy Swiss-Prot
Match: P92965 (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2)

HSP 1 Score: 212.6 bits (540), Expect = 4.8e-54
Identity = 134/232 (57.76%), Postives = 161/232 (69.40%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERG---RHRDGS-KSMANQR 78
           AGFAFVY EDERDAEDAIR LD   FG   RRL VEW + ERG   R   GS +S ++ R
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMR 94

Query: 79  PTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMS 138
           P+KTLFVINFD   TR RD+E+HFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ ++ S
Sbjct: 95  PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNS 154

Query: 139 KILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSP--YRRSPSPVFRRRPSPDYG 198
           K++D+V+SVEYA++DD  RG+    SP R     R   SP   RRSPSP  R R SPDYG
Sbjct: 155 KLMDKVISVEYAVKDDDARGN--GHSPER-----RRDRSPERRRRSPSPYKRERGSPDYG 214

Query: 199 RAHSP--AY--DRYNGPYERRRSPD-YGRNR--SPEYG-GRFRSRSPIRRSR 237
           R  SP  AY  +R +  Y RRRSP  Y ++R  SPEYG  R  + SP RR R
Sbjct: 215 RGASPVAAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRER 259

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BLAST of Cucsat.G1016.T2 vs. ExPASy Swiss-Prot
Match: Q5PPI1 (Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus OX=10116 GN=Srsf9 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 53/171 (30.99%), Postives = 79/171 (46.20%), Query Frame = 0


Query: 12  MSNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMA 71
           + N + L  FAFV FED RDAEDAI G +   +G  R R+    A G RG     S++  
Sbjct: 45  LKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRAYGGRGGWPRASRNGP 104

Query: 72  NQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRN-FAFVQFETQEDATKALEC 131
             R +    +++  P     +D++ H    G V    ++++    V++  +ED   AL  
Sbjct: 105 PTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRK 164

Query: 132 THMSKILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSP 182
              +K         Y +R   ERG  +  S  R+G  GR  DSPY+   SP
Sbjct: 165 LDDTKFRSHEGETSY-IRVYPERGTSYGCSRSRSGSRGR--DSPYQSRGSP 212

[Close]

BLAST of Cucsat.G1016.T2 vs. NCBI nr
Match: XP_011650664.1 (serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis sativus])

HSP 1 Score: 482 bits (1240), Expect = 1.05e-171
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MDDASTAYQFCMSNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER 60
           MDDASTAYQFCMSNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER
Sbjct: 1   MDDASTAYQFCMSNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER 60

Query: 61  GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET 120
           GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET
Sbjct: 61  GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET 120

Query: 121 QEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPS 180
           QEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPS
Sbjct: 121 QEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPS 180

Query: 181 PVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 237
           PVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT
Sbjct: 181 PVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 237

[Close]

BLAST of Cucsat.G1016.T2 vs. NCBI nr
Match: XP_038893498.1 (serine/arginine-rich splicing factor RS31 isoform X2 [Benincasa hispida])

HSP 1 Score: 466 bits (1199), Expect = 1.87e-165
Identity = 234/238 (98.32%), Postives = 235/238 (98.74%), Query Frame = 0


Query: 1   MDDASTAYQFCMSNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER 60
           MDDASTAYQFC+SNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER
Sbjct: 1   MDDASTAYQFCISNCYYLAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER 60

Query: 61  GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET 120
           GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET
Sbjct: 61  GRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFET 120

Query: 121 QEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPS 180
           QEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAG YGRPGDSPYRRSPS
Sbjct: 121 QEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAG-YGRPGDSPYRRSPS 180

Query: 181 PVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG-RFRSRSPIRRSRT 237
           PVFRRRPSPDYGRA SPAYDRYNGPYERRRSPDYGRNRSPEYGG RFRSRSPIRRSRT
Sbjct: 181 PVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGGGRFRSRSPIRRSRT 237

[Close]

BLAST of Cucsat.G1016.T2 vs. NCBI nr
Match: XP_011650665.1 (serine/arginine-rich splicing factor RS31 isoform X3 [Cucumis sativus] >XP_016899085.1 PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X2 [Cucumis melo])

HSP 1 Score: 443 bits (1140), Expect = 1.66e-156
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 138
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 135

Query: 139 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 198
           RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA
Sbjct: 136 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 195

Query: 199 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 237
           YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT
Sbjct: 196 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 234

[Close]

BLAST of Cucsat.G1016.T2 vs. NCBI nr
Match: XP_004133800.1 (serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus] >XP_008437857.1 PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Cucumis melo] >KAA0048868.1 serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis melo var. makuwa] >TYK20820.1 serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 442 bits (1137), Expect = 9.46e-156
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 138
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 154

Query: 139 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 198
           RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA
Sbjct: 155 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 214

Query: 199 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 237
           YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT
Sbjct: 215 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 253

[Close]

BLAST of Cucsat.G1016.T2 vs. NCBI nr
Match: XP_038893575.1 (serine/arginine-rich splicing factor RS31 isoform X3 [Benincasa hispida])

HSP 1 Score: 429 bits (1103), Expect = 7.24e-151
Identity = 217/220 (98.64%), Postives = 217/220 (98.64%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 138
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 135

Query: 139 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 198
           RVVSVEYALRDDGERGDPFDESPRRAG YGRPGDSPYRRSPSPVFRRRPSPDYGRA SPA
Sbjct: 136 RVVSVEYALRDDGERGDPFDESPRRAG-YGRPGDSPYRRSPSPVFRRRPSPDYGRARSPA 195

Query: 199 YDRYNGPYERRRSPDYGRNRSPEYGG-RFRSRSPIRRSRT 237
           YDRYNGPYERRRSPDYGRNRSPEYGG RFRSRSPIRRSRT
Sbjct: 196 YDRYNGPYERRRSPDYGRNRSPEYGGGRFRSRSPIRRSRT 234

[Close]

BLAST of Cucsat.G1016.T2 vs. ExPASy TrEMBL
Match: A0A1S4DTR0 (serine/arginine-rich splicing factor RS31-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483164 PE=4 SV=1)

HSP 1 Score: 443 bits (1140), Expect = 8.04e-157
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 138
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 135

Query: 139 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 198
           RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA
Sbjct: 136 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 195

Query: 199 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 237
           YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT
Sbjct: 196 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 234

[Close]

BLAST of Cucsat.G1016.T2 vs. ExPASy TrEMBL
Match: A0A5D3DBI0 (Serine/arginine-rich splicing factor RS31 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00820 PE=4 SV=1)

HSP 1 Score: 442 bits (1137), Expect = 4.58e-156
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 138
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 154

Query: 139 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 198
           RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA
Sbjct: 155 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 214

Query: 199 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 237
           YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT
Sbjct: 215 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 253

[Close]

BLAST of Cucsat.G1016.T2 vs. ExPASy TrEMBL
Match: A0A0A0L8H4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119350 PE=4 SV=1)

HSP 1 Score: 442 bits (1137), Expect = 4.58e-156
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 138
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 154

Query: 139 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 198
           RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA
Sbjct: 155 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 214

Query: 199 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 237
           YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT
Sbjct: 215 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 253

[Close]

BLAST of Cucsat.G1016.T2 vs. ExPASy TrEMBL
Match: A0A1S3AUZ7 (serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483164 PE=4 SV=1)

HSP 1 Score: 442 bits (1137), Expect = 4.58e-156
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 138
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 154

Query: 139 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 198
           RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA
Sbjct: 155 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 214

Query: 199 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 237
           YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT
Sbjct: 215 YDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 253

[Close]

BLAST of Cucsat.G1016.T2 vs. ExPASy TrEMBL
Match: A0A6J1D289 (serine/arginine-rich splicing factor RS31-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016334 PE=4 SV=1)

HSP 1 Score: 413 bits (1061), Expect = 8.52e-145
Identity = 211/220 (95.91%), Postives = 213/220 (96.82%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           AGFAFVYFEDERDAEDAIRGLDN+ FGYDRRRLSVEWARGERGRHRDGSKS+ANQRPTKT
Sbjct: 16  AGFAFVYFEDERDAEDAIRGLDNMAFGYDRRRLSVEWARGERGRHRDGSKSIANQRPTKT 75

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 138
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 135

Query: 139 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDS-PYRRSPSPVFRRRPSPDYGRAHSP 198
           RVVSVEYALRDDGERGDPFDESPRRA  YGRPGDS PYRRSPSP FRRRPSPDYGRA SP
Sbjct: 136 RVVSVEYALRDDGERGDPFDESPRRAA-YGRPGDSSPYRRSPSPAFRRRPSPDYGRARSP 195

Query: 199 AYDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT 237
           AYDRYNGPYERRRSPDYGRNRSPEYG RFRSRSPIRRSRT
Sbjct: 196 AYDRYNGPYERRRSPDYGRNRSPEYG-RFRSRSPIRRSRT 233

[Close]

BLAST of Cucsat.G1016.T2 vs. TAIR 10
Match: AT3G61860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-78
Identity = 161/230 (70.00%), Postives = 178/230 (77.39%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78
           +G+AFVYFEDERDAEDAIR LDN PFGY++RRLSVEWA+GERGR R  +K+ +N +PTKT
Sbjct: 35  SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKT 94

Query: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 138
           LFVINFDPIRT+  DIE+HFEPYGKV NVRIRRNF+FVQFETQEDATKALE T  SKILD
Sbjct: 95  LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILD 154

Query: 139 RVVSVEYALRDDGERGD-PFDESPRRAGG--YGRPGDSPYRRSPSPVFRRRPSPDYGRAH 198
           RVVSVEYAL+DD ER D     SPRR+    Y R     Y R PSP   RRPSPDYGRA 
Sbjct: 155 RVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRAR 214

Query: 199 SPAYDRYNGP--YERRRSPDYGRNRSPEYG-------GRFRSRSPIRRSR 237
           SP YDRY GP  YERRRSPDYGR RS +YG        R+RSRSP+ R R
Sbjct: 215 SPEYDRYKGPAAYERRRSPDYGR-RSSDYGRQRSPGYDRYRSRSPVPRGR 263

[Close]

BLAST of Cucsat.G1016.T2 vs. TAIR 10
Match: AT2G46610.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 285.4 bits (729), Expect = 4.1e-77
Identity = 160/230 (69.57%), Postives = 179/230 (77.83%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRP 78
           AG+AFVYFEDERDAEDAIR  DN  FGY RR+LSVEWA+   GERG+ RDG K+++NQRP
Sbjct: 9   AGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRP 68

Query: 79  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSK 138
           TKTLFVINFDPIRTR RD+ERHFEPYGKVLNVR+RRNFAFVQF TQEDATKAL+ TH SK
Sbjct: 69  TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 128

Query: 139 ILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAH 198
           +LD+VVSVEYALR+ GER D +  S R             RRSPSPV+RRRPSPDY R  
Sbjct: 129 LLDKVVSVEYALREAGEREDRYAGSRR-------------RRSPSPVYRRRPSPDYTRRR 188

Query: 199 SPAYDRYNG--PYERRRSPDYGRNRSPEYG-------GRFRSRSPIRRSR 237
           SP YDRY G  PYERR+SPDYGR RS +YG       G  RSRSPI+R+R
Sbjct: 189 SPEYDRYKGPAPYERRKSPDYGR-RSSDYGRARARSPGYDRSRSPIQRAR 223

[Close]

BLAST of Cucsat.G1016.T2 vs. TAIR 10
Match: AT2G46610.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 284.3 bits (726), Expect = 9.2e-77
Identity = 159/230 (69.13%), Postives = 179/230 (77.83%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRP 78
           +G+AFVYFEDERDAEDAIR  DN  FGY RR+LSVEWA+   GERG+ RDG K+++NQRP
Sbjct: 35  SGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRP 94

Query: 79  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSK 138
           TKTLFVINFDPIRTR RD+ERHFEPYGKVLNVR+RRNFAFVQF TQEDATKAL+ TH SK
Sbjct: 95  TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 154

Query: 139 ILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAH 198
           +LD+VVSVEYALR+ GER D +  S R             RRSPSPV+RRRPSPDY R  
Sbjct: 155 LLDKVVSVEYALREAGEREDRYAGSRR-------------RRSPSPVYRRRPSPDYTRRR 214

Query: 199 SPAYDRYNG--PYERRRSPDYGRNRSPEYG-------GRFRSRSPIRRSR 237
           SP YDRY G  PYERR+SPDYGR RS +YG       G  RSRSPI+R+R
Sbjct: 215 SPEYDRYKGPAPYERRKSPDYGR-RSSDYGRARARSPGYDRSRSPIQRAR 249

[Close]

BLAST of Cucsat.G1016.T2 vs. TAIR 10
Match: AT5G52040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 214.9 bits (546), Expect = 6.9e-56
Identity = 121/221 (54.75%), Postives = 146/221 (66.06%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER---GRHRDGSKSMANQRP 78
           AGFAFVY EDERDAEDAIR LD   +G   RRL VEW + +R   GR     +S +  RP
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRP 94

Query: 79  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSK 138
           +KTLFVINFD   TR RD+ERHFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK
Sbjct: 95  SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSK 154

Query: 139 ILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAH 198
           ++D+V+SVEYA++DD  RG+ +    RR     R      RRSPSP  R R SPDYGR  
Sbjct: 155 LMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDR-----RRRSPSPYRRERGSPDYGRGA 214

Query: 199 SPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSR 237
           SP   +       R SPDYGR R        RS SP +R+R
Sbjct: 215 SPVAHK-----RERTSPDYGRGR--------RSPSPYKRAR 237

[Close]

BLAST of Cucsat.G1016.T2 vs. TAIR 10
Match: AT5G52040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 214.9 bits (546), Expect = 6.9e-56
Identity = 121/221 (54.75%), Postives = 146/221 (66.06%), Query Frame = 0


Query: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER---GRHRDGSKSMANQRP 78
           AGFAFVY EDERDAEDAIR LD   +G   RRL VEW + +R   GR     +S +  RP
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRP 94

Query: 79  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSK 138
           +KTLFVINFD   TR RD+ERHFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK
Sbjct: 95  SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSK 154

Query: 139 ILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAH 198
           ++D+V+SVEYA++DD  RG+ +    RR     R      RRSPSP  R R SPDYGR  
Sbjct: 155 LMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDR-----RRRSPSPYRRERGSPDYGRGA 214

Query: 199 SPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSR 237
           SP   +       R SPDYGR R        RS SP +R+R
Sbjct: 215 SPVAHK-----RERTSPDYGRGR--------RSPSPYKRAR 237

The following BLAST results are available for this feature:

BLAST of Cucsat.G1016.T2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92964	1.8e-77	70.00	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS3...	[more]
Q9ZPX8	1.3e-75	69.13	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
P92966	9.6e-55	54.75	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
P92965	4.8e-54	57.76	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
Q5PPI1	1.4e-08	30.99	Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus OX=10116 GN=Srsf9 PE...	[more]

BLAST of Cucsat.G1016.T2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650664.1	1.05e-171	100.00	serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis sativus]	[more]
XP_038893498.1	1.87e-165	98.32	serine/arginine-rich splicing factor RS31 isoform X2 [Benincasa hispida]	[more]
XP_011650665.1	1.66e-156	100.00	serine/arginine-rich splicing factor RS31 isoform X3 [Cucumis sativus] >XP_01689...	[more]
XP_004133800.1	9.46e-156	99.54	serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus] >XP_00843...	[more]
XP_038893575.1	7.24e-151	98.64	serine/arginine-rich splicing factor RS31 isoform X3 [Benincasa hispida]	[more]

BLAST of Cucsat.G1016.T2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DTR0	8.04e-157	100.00	serine/arginine-rich splicing factor RS31-like isoform X2 OS=Cucumis melo OX=365...	[more]
A0A5D3DBI0	4.58e-156	99.54	Serine/arginine-rich splicing factor RS31 isoform X2 OS=Cucumis melo var. makuwa...	[more]
A0A0A0L8H4	4.58e-156	99.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119350 PE=4 SV=1	[more]
A0A1S3AUZ7	4.58e-156	99.54	serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucumis melo OX=365...	[more]
A0A6J1D289	8.52e-145	95.91	serine/arginine-rich splicing factor RS31-like isoform X2 OS=Momordica charantia...	[more]

BLAST of Cucsat.G1016.T2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61860.1	1.3e-78	70.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46610.2	4.1e-77	69.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46610.1	9.2e-77	69.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G52040.1	6.9e-56	54.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G52040.2	6.9e-56	54.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 78..144 e-value: 3.3E-17 score: 73.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 19..43 e-value: 9.4E-5 score: 22.2 coord: 79..141 e-value: 2.8E-12 score: 46.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 77..148 score: 15.220978
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 20..58 score: 9.200421
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 17..70 e-value: 1.7E-9 score: 39.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 71..155 e-value: 3.5E-19 score: 70.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..223
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 13..235
None	No IPR available	CDD	cd12466	RRM2_AtRSp31_like	coord: 78..147 e-value: 1.10581E-42 score: 137.295
IPR029537	Arginine/serine-rich-splicing factor RSP31/31A	PANTHER	PTHR23147:SF146	SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED	coord: 13..235
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 19..150

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G1016	Cucsat.G1016	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1016.T2.E1	Cucsat.G1016.T2.E1	exon
Cucsat.G1016.T2.E2	Cucsat.G1016.T2.E2	exon
Cucsat.G1016.T2.E3	Cucsat.G1016.T2.E3	exon
Cucsat.G1016.T2.E4	Cucsat.G1016.T2.E4	exon
Cucsat.G1016.T2.E5	Cucsat.G1016.T2.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1016.T2.C1	Cucsat.G1016.T2.C1	CDS
Cucsat.G1016.T2.C2	Cucsat.G1016.T2.C2	CDS
Cucsat.G1016.T2.C3	Cucsat.G1016.T2.C3	CDS
Cucsat.G1016.T2.C4	Cucsat.G1016.T2.C4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1016.T2	Cucsat.G1016.T2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0003723	RNA binding