Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACGGTGGGAGCTAGTGCGGTGGTGCAAAATGGTCGAAATGTGGGAAAATGTCCAAATTAATAAAACTAATTGCATGGCTAAATTAATAAAAATAATATTAATTTTACATTTTATCCATTTTATCCATTTTTTTTAATAATTATTTAAAAAATAAATTACGTCGTCGAGGTTACACTTCCTCCGTTCGTTTCTTCCTCGGAAATCTGTGCGATTGTGTTTCTCTCTTTGCGTCTCATTCCATGGCGTTTTCTGTGCATTCCAGAGCAAGAAGTACTACACTAAGGTGCTGAGTCTGTCGGAATCATTCAGTGGTATCAAGGATGTTAATCTGCACCTGGCAGCAACCACTTCAAAGGAACTTGTTGAAGATCCTCTGAAATCAGTAGAGCAATCCAAGCGCTGGAAGATTAAGAGTTGCTATGGTGATATTGGCTTTCAGTACAGAGACGATGAGACGATTGCTTACGTCGCCTCCCGTTCTTAA
mRNA sequence
ATGGCGACGGTGGGAGCTAGTGCGGTGGTGCAAAATGGTCGAAATAGCAAGAAGTACTACACTAAGGTGCTGAGTCTGTCGGAATCATTCAGTGGTATCAAGGATGTTAATCTGCACCTGGCAGCAACCACTTCAAAGGAACTTGTTGAAGATCCTCTGAAATCAGTAGAGCAATCCAAGCGCTGGAAGATTAAGAGTTGCTATGGTGATATTGGCTTTCAGTACAGAGACGATGAGACGATTGCTTACGTCGCCTCCCGTTCTTAA
Coding sequence (CDS)
ATGGCGACGGTGGGAGCTAGTGCGGTGGTGCAAAATGGTCGAAATAGCAAGAAGTACTACACTAAGGTGCTGAGTCTGTCGGAATCATTCAGTGGTATCAAGGATGTTAATCTGCACCTGGCAGCAACCACTTCAAAGGAACTTGTTGAAGATCCTCTGAAATCAGTAGAGCAATCCAAGCGCTGGAAGATTAAGAGTTGCTATGGTGATATTGGCTTTCAGTACAGAGACGATGAGACGATTGCTTACGTCGCCTCCCGTTCTTAA
Protein sequence
MATVGASAVVQNGRNSKKYYTKVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETIAYVASRS
Homology
BLAST of Csor.00g275050.m01 vs. NCBI nr
Match:
KAG6579574.1 (hypothetical protein SDJN03_24022, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 174 bits (442), Expect = 7.08e-55
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
Query: 1 MATVGASAVVQNGRNSKKYYTKVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSK 60
MATVGASAVVQNGRNSKKYYTKVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSK
Sbjct: 1 MATVGASAVVQNGRNSKKYYTKVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSK 60
Query: 61 RWKIKSCYGDIGFQYRDDETIAYVASRS 88
RWKIKSCYGDIGFQYRDDETIAYVASRS
Sbjct: 61 RWKIKSCYGDIGFQYRDDETIAYVASRS 88
BLAST of Csor.00g275050.m01 vs. NCBI nr
Match:
KAG7017034.1 (hypothetical protein SDJN02_22146, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 169 bits (428), Expect = 1.44e-51
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0
Query: 1 MATVGASAVVQNGRNSKKYYTKVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSK 60
MATVGASAVVQNGRNSKKYY KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSK
Sbjct: 18 MATVGASAVVQNGRNSKKYYNKVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSK 77
Query: 61 RWKIKSCYGDIGFQYRDDETIAYVAS 86
RWKIKSCYGDIGFQYRDDETIAYVAS
Sbjct: 78 RWKIKSCYGDIGFQYRDDETIAYVAS 103
BLAST of Csor.00g275050.m01 vs. NCBI nr
Match:
XP_022957994.1 (methyltransferase-like protein 17, mitochondrial isoform X2 [Cucurbita moschata])
HSP 1 Score: 127 bits (320), Expect = 1.21e-32
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0
Query: 22 KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 81
KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54 KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113
Query: 82 AYVASR 87
AYVASR
Sbjct: 114 AYVASR 119
BLAST of Csor.00g275050.m01 vs. NCBI nr
Match:
XP_022957993.1 (methyltransferase-like protein 17, mitochondrial isoform X1 [Cucurbita moschata] >KAG6605595.1 Methyltransferase-like protein 17, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 127 bits (320), Expect = 2.23e-32
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0
Query: 22 KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 81
KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54 KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113
Query: 82 AYVASR 87
AYVASR
Sbjct: 114 AYVASR 119
BLAST of Csor.00g275050.m01 vs. NCBI nr
Match:
KAG7035505.1 (Methyltransferase-like protein 17, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 127 bits (320), Expect = 2.23e-32
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0
Query: 22 KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 81
KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54 KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113
Query: 82 AYVASR 87
AYVASR
Sbjct: 114 AYVASR 119
BLAST of Csor.00g275050.m01 vs. ExPASy TrEMBL
Match:
A0A6J1H3Q3 (methyltransferase-like protein 17, mitochondrial isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459357 PE=4 SV=1)
HSP 1 Score: 127 bits (320), Expect = 5.84e-33
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0
Query: 22 KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 81
KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54 KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113
Query: 82 AYVASR 87
AYVASR
Sbjct: 114 AYVASR 119
BLAST of Csor.00g275050.m01 vs. ExPASy TrEMBL
Match:
A0A6J1E0U3 (methyltransferase-like protein 17, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026114 PE=4 SV=1)
HSP 1 Score: 127 bits (320), Expect = 1.08e-32
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0
Query: 22 KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 81
KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54 KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113
Query: 82 AYVASR 87
AYVASR
Sbjct: 114 AYVASR 119
BLAST of Csor.00g275050.m01 vs. ExPASy TrEMBL
Match:
A0A6J1H1V3 (methyltransferase-like protein 17, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459357 PE=4 SV=1)
HSP 1 Score: 127 bits (320), Expect = 1.08e-32
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0
Query: 22 KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 81
KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54 KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113
Query: 82 AYVASR 87
AYVASR
Sbjct: 114 AYVASR 119
BLAST of Csor.00g275050.m01 vs. ExPASy TrEMBL
Match:
A0A6J1E517 (methyltransferase-like protein 17, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026114 PE=4 SV=1)
HSP 1 Score: 127 bits (320), Expect = 1.09e-32
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0
Query: 22 KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 81
KVL LSESFSGIKDVNL LAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54 KVLRLSESFSGIKDVNLQLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 113
Query: 82 AYVASR 87
AYVASR
Sbjct: 114 AYVASR 119
BLAST of Csor.00g275050.m01 vs. ExPASy TrEMBL
Match:
A0A6J1KA52 (methyltransferase-like protein 17, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111491494 PE=4 SV=1)
HSP 1 Score: 124 bits (311), Expect = 2.07e-31
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0
Query: 22 KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 81
KVL LS+SFSGIKDVNL LAATTSKELVEDPLKSV QSKRWKIKSCYGDIGFQYRDDETI
Sbjct: 54 KVLRLSDSFSGIKDVNLQLAATTSKELVEDPLKSVAQSKRWKIKSCYGDIGFQYRDDETI 113
Query: 82 AYVASR 87
AYVASR
Sbjct: 114 AYVASR 119
BLAST of Csor.00g275050.m01 vs. TAIR 10
Match:
AT1G64600.1 (methyltransferases;copper ion binding )
HSP 1 Score: 74.3 bits (181), Expect = 5.4e-14
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 0
Query: 22 KVLSLSESFSGIKDVNLHLAATTSKELVEDPLKSVEQSKRWKIKSCYGDIGFQYRDDETI 81
KV LSESF IKD NL L TT+K L D + S+E +KRWKI++ YGD G QYRD ET
Sbjct: 49 KVRQLSESFQEIKDTNLQLPETTAKSLA-DSMNSLE-TKRWKIQTVYGDSGLQYRDGETA 108
Query: 82 AYVASR 88
AY+ASR
Sbjct: 109 AYIASR 112
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6579574.1 | 7.08e-55 | 100.00 | hypothetical protein SDJN03_24022, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7017034.1 | 1.44e-51 | 98.84 | hypothetical protein SDJN02_22146, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022957994.1 | 1.21e-32 | 96.97 | methyltransferase-like protein 17, mitochondrial isoform X2 [Cucurbita moschata] | [more] |
XP_022957993.1 | 2.23e-32 | 96.97 | methyltransferase-like protein 17, mitochondrial isoform X1 [Cucurbita moschata]... | [more] |
KAG7035505.1 | 2.23e-32 | 96.97 | Methyltransferase-like protein 17, mitochondrial, partial [Cucurbita argyrosperm... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1H3Q3 | 5.84e-33 | 96.97 | methyltransferase-like protein 17, mitochondrial isoform X2 OS=Cucurbita moschat... | [more] |
A0A6J1E0U3 | 1.08e-32 | 96.97 | methyltransferase-like protein 17, mitochondrial isoform X2 OS=Momordica charant... | [more] |
A0A6J1H1V3 | 1.08e-32 | 96.97 | methyltransferase-like protein 17, mitochondrial isoform X1 OS=Cucurbita moschat... | [more] |
A0A6J1E517 | 1.09e-32 | 96.97 | methyltransferase-like protein 17, mitochondrial isoform X1 OS=Momordica charant... | [more] |
A0A6J1KA52 | 2.07e-31 | 93.94 | methyltransferase-like protein 17, mitochondrial OS=Cucurbita maxima OX=3661 GN=... | [more] |
Match Name | E-value | Identity | Description | |
AT1G64600.1 | 5.4e-14 | 60.61 | methyltransferases;copper ion binding | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g275050.m01.CDS02 | Csor.00g275050.m01.CDS02 | CDS |
Csor.00g275050.m01.CDS01 | Csor.00g275050.m01.CDS01 | CDS |
The following initial feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g275050.m01.initial01 | Csor.00g275050.m01.initial01 | initial |
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g275050.m01.start_codon01 | Csor.00g275050.m01.start_codon01 | start_codon |
The following intron feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g275050.m01.intron01 | Csor.00g275050.m01.intron01 | intron |
The following terminal feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g275050.m01.terminal01 | Csor.00g275050.m01.terminal01 | terminal |
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g275050.m01.stop_codon01 | Csor.00g275050.m01.stop_codon01 | stop_codon |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Csor.00g275050.m01 | Csor.00g275050.m01-protein | polypeptide |