Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTGGTTGCTCAGATTGCTTCAAATGACCCAATCAGTCAATTGAAGATTGATGGATGCCTCATTTGTCCAAGCAAGTGGATACAAATTCCTGATGTCTCAGAGGTCTGCGTGCAAAATATTGCAAAGTTTGCTGTGGAGGACTACAACCTCGTACATAAGGAGAGTTTCAAATACAAGAGCATTAAATGTGGTTGGTTTATGGAGCTGAAGGGTGAAGACCTGGCCTACCGCCTCCATATTGAGGTGAAAGACTGTTTGGGACGTATTTTTGAATTGAATGTCGTAGTTTCTGAAAAGAAAACATGTGCTGAAAAGATCAGAAAGCTTGAATCGGCAAAACTTATTAAGAAGAATTAA
mRNA sequence
ATGGCAGTGGTTGCTCAGATTGCTTCAAATGACCCAATCAGTCAATTGAAGATTGATGGATGCCTCATTTGTCCAAGCAAGTGGATACAAATTCCTGATGTCTCAGAGGTCTGCGTGCAAAATATTGCAAAGTTTGCTGTGGAGGACTACAACCTCGTACATAAGGAGAGTTTCAAATACAAGAGCATTAAATGTGGTTGGTTTATGGAGCTGAAGGGTGAAGACCTGGCCTACCGCCTCCATATTGAGGTGAAAGACTGTTTGGGACGTATTTTTGAATTGAATGTCGTAGTTTCTGAAAAGAAAACATGTGCTGAAAAGATCAGAAAGCTTGAATCGGCAAAACTTATTAAGAAGAATTAA
Coding sequence (CDS)
ATGGCAGTGGTTGCTCAGATTGCTTCAAATGACCCAATCAGTCAATTGAAGATTGATGGATGCCTCATTTGTCCAAGCAAGTGGATACAAATTCCTGATGTCTCAGAGGTCTGCGTGCAAAATATTGCAAAGTTTGCTGTGGAGGACTACAACCTCGTACATAAGGAGAGTTTCAAATACAAGAGCATTAAATGTGGTTGGTTTATGGAGCTGAAGGGTGAAGACCTGGCCTACCGCCTCCATATTGAGGTGAAAGACTGTTTGGGACGTATTTTTGAATTGAATGTCGTAGTTTCTGAAAAGAAAACATGTGCTGAAAAGATCAGAAAGCTTGAATCGGCAAAACTTATTAAGAAGAATTAA
Protein sequence
MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKYKSIKCGWFMELKGEDLAYRLHIEVKDCLGRIFELNVVVSEKKTCAEKIRKLESAKLIKKN
Homology
BLAST of Csor.00g261660.m01 vs. NCBI nr
Match:
KAG6588758.1 (hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 242 bits (618), Expect = 1.04e-80
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query: 1 MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKY 60
MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKY
Sbjct: 1 MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKY 60
Query: 61 KSIKCGWFMELKGEDLAYRLHIEVKDCLGRIFELNVVVSEKKTCAEKIRKLESAKLIKKN 120
KSIKCGWFMELKGEDLAYRLHIEVKDCLGRIFELNVVVSEKKTCAEKIRKLESAKLIKKN
Sbjct: 61 KSIKCGWFMELKGEDLAYRLHIEVKDCLGRIFELNVVVSEKKTCAEKIRKLESAKLIKKN 120
BLAST of Csor.00g261660.m01 vs. NCBI nr
Match:
KAG6588757.1 (hypothetical protein SDJN03_17322, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 234 bits (597), Expect = 1.66e-77
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 0
Query: 1 MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKY 60
MAVVAQ+A NDPISQLKIDGCLICPSKWIQIPDVSEVCVQN+AKFAVEDYNLVHKESFKY
Sbjct: 1 MAVVAQVALNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNVAKFAVEDYNLVHKESFKY 60
Query: 61 KSIKCGWFMELKGEDLAYRLHIEVKDCLGRIFELNVVVSEKKTCAEKIRKLESAKLIKKN 120
KSIKCGWFMELKGEDLAYRLH+EVKDCLGRIF L+VVVSEKKTCAEKIRKLESAKLIKKN
Sbjct: 61 KSIKCGWFMELKGEDLAYRLHVEVKDCLGRIFVLDVVVSEKKTCAEKIRKLESAKLIKKN 120
BLAST of Csor.00g261660.m01 vs. NCBI nr
Match:
KAG6588759.1 (hypothetical protein SDJN03_17324, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 233 bits (594), Expect = 4.75e-77
Identity = 114/120 (95.00%), Postives = 119/120 (99.17%), Query Frame = 0
Query: 1 MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKY 60
MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAV+DYNL+HKESFKY
Sbjct: 1 MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKY 60
Query: 61 KSIKCGWFMELKGEDLAYRLHIEVKDCLGRIFELNVVVSEKKTCAEKIRKLESAKLIKKN 120
+SIKCGWFMELKGEDLA+RLHI VKDCLGRIFEL+VVVSEKKTCAEKIRKLESAKLIKKN
Sbjct: 61 QSIKCGWFMELKGEDLAFRLHIVVKDCLGRIFELDVVVSEKKTCAEKIRKLESAKLIKKN 120
BLAST of Csor.00g261660.m01 vs. NCBI nr
Match:
KAG6588755.1 (hypothetical protein SDJN03_17320, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 231 bits (589), Expect = 2.75e-76
Identity = 112/120 (93.33%), Postives = 118/120 (98.33%), Query Frame = 0
Query: 1 MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKY 60
MAVVAQI SNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAV+DYNL+HKESFKY
Sbjct: 1 MAVVAQITSNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKY 60
Query: 61 KSIKCGWFMELKGEDLAYRLHIEVKDCLGRIFELNVVVSEKKTCAEKIRKLESAKLIKKN 120
+SIKCGWFMELKGEDLA+RLHI VKDCLGRIFEL+VVVSEKKTCAEK+RKLESAKLIKKN
Sbjct: 61 QSIKCGWFMELKGEDLAFRLHIVVKDCLGRIFELDVVVSEKKTCAEKVRKLESAKLIKKN 120
BLAST of Csor.00g261660.m01 vs. NCBI nr
Match:
XP_023522970.1 (uncharacterized protein LOC111787034 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 229 bits (585), Expect = 1.12e-75
Identity = 111/120 (92.50%), Postives = 116/120 (96.67%), Query Frame = 0
Query: 1 MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKY 60
MAVVA IASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAV+DYNL+HKESFKY
Sbjct: 1 MAVVAHIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKY 60
Query: 61 KSIKCGWFMELKGEDLAYRLHIEVKDCLGRIFELNVVVSEKKTCAEKIRKLESAKLIKKN 120
KSIKCGWFMELKGEDLA+ LHIEVKDCLGRIFEL+VVVSEKK C EK+RKLESAKLIKKN
Sbjct: 61 KSIKCGWFMELKGEDLAFHLHIEVKDCLGRIFELDVVVSEKKACGEKVRKLESAKLIKKN 120
BLAST of Csor.00g261660.m01 vs. ExPASy TrEMBL
Match:
A0A6J1EIQ8 (uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC111434517 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 1.28e-18
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 0
Query: 27 KWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKYKSIKCGWFMELKGEDLAYRLHIEVKD 86
KWI+IPDV+ C+Q +AKFAVE +N H + Y SI GW++EL +L YRLHI+ D
Sbjct: 16 KWIKIPDVNGHCLQQVAKFAVEKFNAEHGDCLIYNSIFEGWYLELGSNNLKYRLHIKAVD 75
Query: 87 CLGRIFELNVVVSEKKTCAEKIRKLESAKLI 117
LGR+ VVV E+K E+IRKL S +I
Sbjct: 76 FLGRLLIYEVVVFEEKPDKERIRKLISFVII 106
BLAST of Csor.00g261660.m01 vs. ExPASy TrEMBL
Match:
A0A6J1ELQ9 (uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC111434515 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 9.39e-18
Identity = 46/87 (52.87%), Postives = 55/87 (63.22%), Query Frame = 0
Query: 27 KWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKYKSIKCGWFMELKGEDLAYRLHIEVKD 86
KWI+IPDVS CVQ +AK AVE +N+ H S KY+SI GWF EL +L YRLHI D
Sbjct: 16 KWIKIPDVSSHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWFCELGQNNLKYRLHIRAID 75
Query: 87 CLGRIFELNVVVSEKKTCAEKIRKLES 113
L R +V E+K E+IRKL S
Sbjct: 76 FLQRSLLYEALVFEEKPKLERIRKLIS 102
BLAST of Csor.00g261660.m01 vs. ExPASy TrEMBL
Match:
A0A6J1EQ39 (uncharacterized protein LOC111434636 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434636 PE=4 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 1.76e-17
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 0
Query: 16 LKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKYKSIKCGWFMELKGED 75
+K+ G + KWI+IPDVS CVQ +AK AVE +N+ H S KY+SI GW+ EL +
Sbjct: 5 VKVCGQVPAEEKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCELGQNN 64
Query: 76 LAYRLHIEVKDCLGRIFELNVVVSEKKTCAEKIRKLES 113
L YRLHI D L R +V E+K E+IRKL S
Sbjct: 65 LKYRLHIRAIDFLQRSLLYEALVFEEKPKFERIRKLIS 102
BLAST of Csor.00g261660.m01 vs. ExPASy TrEMBL
Match:
A0A6J1EI90 (uncharacterized protein LOC111434592 OS=Cucurbita moschata OX=3662 GN=LOC111434592 PE=4 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 1.76e-17
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 0
Query: 16 LKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKYKSIKCGWFMELKGED 75
+K+ G + KWI+IPDVS CVQ +AK AVE +N+ H S KY+SI GW+ EL +
Sbjct: 5 VKVCGQVPAEEKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCELGQNN 64
Query: 76 LAYRLHIEVKDCLGRIFELNVVVSEKKTCAEKIRKLES 113
L YRLHI D L R +V E+K E+IRKL S
Sbjct: 65 LKYRLHIRAIDFLQRSLLYEALVFEEKPKFERIRKLIS 102
BLAST of Csor.00g261660.m01 vs. ExPASy TrEMBL
Match:
A0A6J1EJ75 (uncharacterized protein LOC111434636 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434636 PE=4 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 1.77e-17
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 0
Query: 16 LKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKYKSIKCGWFMELKGED 75
+K+ G + KWI+IPDVS CVQ +AK AVE +N+ H S KY+SI GW+ EL +
Sbjct: 5 VKVCGQVPAEEKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCELGQNN 64
Query: 76 LAYRLHIEVKDCLGRIFELNVVVSEKKTCAEKIRKLES 113
L YRLHI D L R +V E+K E+IRKL S
Sbjct: 65 LKYRLHIRAIDFLQRSLLYEALVFEEKPKFERIRKLIS 102
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6588758.1 | 1.04e-80 | 100.00 | hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6588757.1 | 1.66e-77 | 95.00 | hypothetical protein SDJN03_17322, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6588759.1 | 4.75e-77 | 95.00 | hypothetical protein SDJN03_17324, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6588755.1 | 2.75e-76 | 93.33 | hypothetical protein SDJN03_17320, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023522970.1 | 1.12e-75 | 92.50 | uncharacterized protein LOC111787034 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1EIQ8 | 1.28e-18 | 50.55 | uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC1114345... | [more] |
A0A6J1ELQ9 | 9.39e-18 | 52.87 | uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC1114345... | [more] |
A0A6J1EQ39 | 1.76e-17 | 47.96 | uncharacterized protein LOC111434636 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1EI90 | 1.76e-17 | 47.96 | uncharacterized protein LOC111434592 OS=Cucurbita moschata OX=3662 GN=LOC1114345... | [more] |
A0A6J1EJ75 | 1.77e-17 | 47.96 | uncharacterized protein LOC111434636 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g261660.m01.CDS01 | Csor.00g261660.m01.CDS01 | CDS |
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g261660.m01.stop_codon01 | Csor.00g261660.m01.stop_codon01 | stop_codon |
The following single feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g261660.m01.single01 | Csor.00g261660.m01.single01 | single |
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g261660.m01.start_codon01 | Csor.00g261660.m01.start_codon01 | start_codon |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Csor.00g261660.m01 | Csor.00g261660.m01-protein | polypeptide |