CsaV3_5G020050.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G020050.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 14718314 .. 14719868 (+)
Sequence length	207
RNA-Seq Expression	CsaV3_5G020050.1
Synteny	CsaV3_5G020050.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCCTCAGTTCACCAGTACAAGCCACACATTAGTACAACCTACACCCAATCGAGTCAAAGTCACAAGCTCACATCCAAAATTTTATACAACACAATCAATTAAGATCATCCTGCCTACATCCACCTACATATTTAATTCCAGACAATCCCCATATGCATTCAACATCAAGTCTACGTCAATTTATGTACATATATAAATTCAGTTAGACGTATACCCTCCACATAAGAGTCAACCATCCTCAGTTCAGTCAACAAACATTTTAATTTAGTCATTTCCATGAACACACATAAAACTATTTAAAGCCATTAAGTCCCTTTAACCACGTCAACTTATACTTAAGAGTCATACCCTTTACGTTTAGTCAAGTCCCAGTCAAATCTTGAAATTCACAAGAAAGTTCCTTAACTCAAGGTTGCTCAATCTTTCAAACAGCTAAATCCCATGAAGGACACCTAACCATAAGGACAAAATAACTCCGATACTTTCACTTTCACCACACATACTCCACTTAATTTCCTCAATGCAAGTTCTAACTTACTAAGGTATTGGTGAACCGAACTCAAAGTTCACAAATTTGTCGTGATTCAACGTTATTTCCAACTCCTTCAAGAATCAAACAACAGATTAATCAACCATTCCAACCATAACATTTGAACATCAGAAACAATTACAACCCATACTTAAATTGTTACCAACAAGGCAACTTCAAAAAATCACTGTAAAACAGAGGCGGCGACACACCACGACGCACGACTGTCGGACGCATGGAAAACCCTTAAGTGTGAGTCGATCGGCAGCCGTCGGCTAAGGGAGACGTGGCGAGTGAGCTTCATGGATGGAGACCGACGCGAATGAAGCTACAGACCTGAACTGGCACGGCGAGTCGACTACCCCTGTTCAAGGCAGTGCAGACCAAATGTTTCAGTTGGAAGTTTGGGCTATGTTCGGACGGTCAACGACGTGACTATTGGGGGTGGAGCACGGTGGCTAGTCGAGATTTGAGGCGAATGAAATCCACCGAAGGCAGGCGCAAACGGACTGTCGGGCTCGGCTGGAGGACTATGCAACCCGAATGGACGACGACTTCAGGCGAACGGTACAGTAGCGACAGAACGAGGAGAAGAGATCGGACGTCGGCGTGCTTGCGTGGACGAAGCTTGGACTCGGCGGGATCTTGGCTTCGTCGGAAGTATAGACAGTTGGCAGTGGTTTGAACGGAAGAGAAAAACGAAAGAGAAGGAAGAAAAATAGGGGCGGCGGCCGTGGATCGGAGAAGAAAAGAAGGAGAAGAGTGGTGGGGCGGCTCGACGGGCACGGTGAAAGAAGAGAAGAAAAAGAAAGAGAAAAAACGAAAAAAAAAGGAAAATAAATAGGGGAGGGGCACGCGAGAGAGAGAGAGGGAGAGAGAAGGATTTTTTTTTTTTTTTATATATAAATAATAATTATAATAATAAAAATAAATAAATATTATTATTATTATTATAACATTTCCAATCATTTTCTCCCCTAACTTCTTTTCTTTAAAAAAATAAATCTTCAAACTAAAATGTAAT

mRNA sequence

ATGAAATCCACCGAAGGCAGGCGCAAACGGACTGTCGGGCTCGGCTGGAGGACTATGCAACCCGAATGGACGACGACTTCAGGCGAACGGTACAGTAGCGACAGAACGAGGAGAAGAGATCGGACGTCGGCGTGCTTGCGTGGACGAAGCTTGGACTCGGCGGGATCTTGGCTTCGTCGGAAGTATAGACAGTTGGCAGTGGTTTGA

Coding sequence (CDS)

ATGAAATCCACCGAAGGCAGGCGCAAACGGACTGTCGGGCTCGGCTGGAGGACTATGCAACCCGAATGGACGACGACTTCAGGCGAACGGTACAGTAGCGACAGAACGAGGAGAAGAGATCGGACGTCGGCGTGCTTGCGTGGACGAAGCTTGGACTCGGCGGGATCTTGGCTTCGTCGGAAGTATAGACAGTTGGCAGTGGTTTGA

Protein sequence

MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRRKYRQLAVV*

Homology

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BLAST of CsaV3_5G020050.1 vs. NCBI nr
Match: KAE8648332.1 (hypothetical protein Csa_023077 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRR 60
          MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRR
Sbjct: 1  MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRR 60

Query: 61 KYRQLAVV 69
          KYRQLAVV
Sbjct: 61 KYRQLAVV 68

The following BLAST results are available for this feature:

BLAST of CsaV3_5G020050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648332.1	2.0e-29	100.00	hypothetical protein Csa_023077 [Cucumis sativus]	[more]

BLAST of CsaV3_5G020050.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G020050.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G020050.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_5G020050	CsaV3_5G020050	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G020050.1.exon1	CsaV3_5G020050.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G020050.1.cds1	CsaV3_5G020050.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G020050.1	CsaV3_5G020050.1-protein	polypeptide