Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. CGCCCTCAGTTCACCAGTACAAGCCACACATTAGTACAACCTACACCCAATCGAGTCAAAGTCACAAGCTCACATCCAAAATTTTATACAACACAATCAATTAAGATCATCCTGCCTACATCCACCTACATATTTAATTCCAGACAATCCCCATATGCATTCAACATCAAGTCTACGTCAATTTATGTACATATATAAATTCAGTTAGACGTATACCCTCCACATAAGAGTCAACCATCCTCAGTTCAGTCAACAAACATTTTAATTTAGTCATTTCCATGAACACACATAAAACTATTTAAAGCCATTAAGTCCCTTTAACCACGTCAACTTATACTTAAGAGTCATACCCTTTACGTTTAGTCAAGTCCCAGTCAAATCTTGAAATTCACAAGAAAGTTCCTTAACTCAAGGTTGCTCAATCTTTCAAACAGCTAAATCCCATGAAGGACACCTAACCATAAGGACAAAATAACTCCGATACTTTCACTTTCACCACACATACTCCACTTAATTTCCTCAATGCAAGTTCTAACTTACTAAGGTATTGGTGAACCGAACTCAAAGTTCACAAATTTGTCGTGATTCAACGTTATTTCCAACTCCTTCAAGAATCAAACAACAGATTAATCAACCATTCCAACCATAACATTTGAACATCAGAAACAATTACAACCCATACTTAAATTGTTACCAACAAGGCAACTTCAAAAAATCACTGTAAAACAGAGGCGGCGACACACCACGACGCACGACTGTCGGACGCATGGAAAACCCTTAAGTGTGAGTCGATCGGCAGCCGTCGGCTAAGGGAGACGTGGCGAGTGAGCTTCATGGATGGAGACCGACGCGAATGAAGCTACAGACCTGAACTGGCACGGCGAGTCGACTACCCCTGTTCAAGGCAGTGCAGACCAAATGTTTCAGTTGGAAGTTTGGGCTATGTTCGGACGGTCAACGACGTGACTATTGGGGGTGGAGCACGGTGGCTAGTCGAGATTTGAGGCGAATGAAATCCACCGAAGGCAGGCGCAAACGGACTGTCGGGCTCGGCTGGAGGACTATGCAACCCGAATGGACGACGACTTCAGGCGAACGGTACAGTAGCGACAGAACGAGGAGAAGAGATCGGACGTCGGCGTGCTTGCGTGGACGAAGCTTGGACTCGGCGGGATCTTGGCTTCGTCGGAAGTATAGACAGTTGGCAGTGGTTTGAACGGAAGAGAAAAACGAAAGAGAAGGAAGAAAAATAGGGGCGGCGGCCGTGGATCGGAGAAGAAAAGAAGGAGAAGAGTGGTGGGGCGGCTCGACGGGCACGGTGAAAGAAGAGAAGAAAAAGAAAGAGAAAAAACGAAAAAAAAAGGAAAATAAATAGGGGAGGGGCACGCGAGAGAGAGAGAGGGAGAGAGAAGGATTTTTTTTTTTTTTTATATATAAATAATAATTATAATAATAAAAATAAATAAATATTATTATTATTATTATAACATTTCCAATCATTTTCTCCCCTAACTTCTTTTCTTTAAAAAAATAAATCTTCAAACTAAAATGTAAT mRNA sequence ATGAAATCCACCGAAGGCAGGCGCAAACGGACTGTCGGGCTCGGCTGGAGGACTATGCAACCCGAATGGACGACGACTTCAGGCGAACGGTACAGTAGCGACAGAACGAGGAGAAGAGATCGGACGTCGGCGTGCTTGCGTGGACGAAGCTTGGACTCGGCGGGATCTTGGCTTCGTCGGAAGTATAGACAGTTGGCAGTGGTTTGA Coding sequence (CDS) ATGAAATCCACCGAAGGCAGGCGCAAACGGACTGTCGGGCTCGGCTGGAGGACTATGCAACCCGAATGGACGACGACTTCAGGCGAACGGTACAGTAGCGACAGAACGAGGAGAAGAGATCGGACGTCGGCGTGCTTGCGTGGACGAAGCTTGGACTCGGCGGGATCTTGGCTTCGTCGGAAGTATAGACAGTTGGCAGTGGTTTGA Protein sequence MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRRKYRQLAVV*
Homology
BLAST of CsaV3_5G020050.1 vs. NCBI nr
Match: KAE8648332.1 (hypothetical protein Csa_023077 [Cucumis sativus]) HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
Query: 1 MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRR 60
MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRR
Sbjct: 1 MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRR 60
Query: 61 KYRQLAVV 69
KYRQLAVV
Sbjct: 61 KYRQLAVV 68
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8648332.1 | 2.0e-29 | 100.00 | hypothetical protein Csa_023077 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..42 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G020050.1.exon1 | CsaV3_5G020050.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G020050.1.cds1 | CsaV3_5G020050.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G020050.1 | CsaV3_5G020050.1-protein | polypeptide |
|
