CsaV3_5G020050.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G020050.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 14718314 .. 14719868 (+)
Sequence length207
RNA-Seq ExpressionCsaV3_5G020050.1
SyntenyCsaV3_5G020050.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCCTCAGTTCACCAGTACAAGCCACACATTAGTACAACCTACACCCAATCGAGTCAAAGTCACAAGCTCACATCCAAAATTTTATACAACACAATCAATTAAGATCATCCTGCCTACATCCACCTACATATTTAATTCCAGACAATCCCCATATGCATTCAACATCAAGTCTACGTCAATTTATGTACATATATAAATTCAGTTAGACGTATACCCTCCACATAAGAGTCAACCATCCTCAGTTCAGTCAACAAACATTTTAATTTAGTCATTTCCATGAACACACATAAAACTATTTAAAGCCATTAAGTCCCTTTAACCACGTCAACTTATACTTAAGAGTCATACCCTTTACGTTTAGTCAAGTCCCAGTCAAATCTTGAAATTCACAAGAAAGTTCCTTAACTCAAGGTTGCTCAATCTTTCAAACAGCTAAATCCCATGAAGGACACCTAACCATAAGGACAAAATAACTCCGATACTTTCACTTTCACCACACATACTCCACTTAATTTCCTCAATGCAAGTTCTAACTTACTAAGGTATTGGTGAACCGAACTCAAAGTTCACAAATTTGTCGTGATTCAACGTTATTTCCAACTCCTTCAAGAATCAAACAACAGATTAATCAACCATTCCAACCATAACATTTGAACATCAGAAACAATTACAACCCATACTTAAATTGTTACCAACAAGGCAACTTCAAAAAATCACTGTAAAACAGAGGCGGCGACACACCACGACGCACGACTGTCGGACGCATGGAAAACCCTTAAGTGTGAGTCGATCGGCAGCCGTCGGCTAAGGGAGACGTGGCGAGTGAGCTTCATGGATGGAGACCGACGCGAATGAAGCTACAGACCTGAACTGGCACGGCGAGTCGACTACCCCTGTTCAAGGCAGTGCAGACCAAATGTTTCAGTTGGAAGTTTGGGCTATGTTCGGACGGTCAACGACGTGACTATTGGGGGTGGAGCACGGTGGCTAGTCGAGATTTGAGGCGAATGAAATCCACCGAAGGCAGGCGCAAACGGACTGTCGGGCTCGGCTGGAGGACTATGCAACCCGAATGGACGACGACTTCAGGCGAACGGTACAGTAGCGACAGAACGAGGAGAAGAGATCGGACGTCGGCGTGCTTGCGTGGACGAAGCTTGGACTCGGCGGGATCTTGGCTTCGTCGGAAGTATAGACAGTTGGCAGTGGTTTGAACGGAAGAGAAAAACGAAAGAGAAGGAAGAAAAATAGGGGCGGCGGCCGTGGATCGGAGAAGAAAAGAAGGAGAAGAGTGGTGGGGCGGCTCGACGGGCACGGTGAAAGAAGAGAAGAAAAAGAAAGAGAAAAAACGAAAAAAAAAGGAAAATAAATAGGGGAGGGGCACGCGAGAGAGAGAGAGGGAGAGAGAAGGATTTTTTTTTTTTTTTATATATAAATAATAATTATAATAATAAAAATAAATAAATATTATTATTATTATTATAACATTTCCAATCATTTTCTCCCCTAACTTCTTTTCTTTAAAAAAATAAATCTTCAAACTAAAATGTAAT

mRNA sequence

ATGAAATCCACCGAAGGCAGGCGCAAACGGACTGTCGGGCTCGGCTGGAGGACTATGCAACCCGAATGGACGACGACTTCAGGCGAACGGTACAGTAGCGACAGAACGAGGAGAAGAGATCGGACGTCGGCGTGCTTGCGTGGACGAAGCTTGGACTCGGCGGGATCTTGGCTTCGTCGGAAGTATAGACAGTTGGCAGTGGTTTGA

Coding sequence (CDS)

ATGAAATCCACCGAAGGCAGGCGCAAACGGACTGTCGGGCTCGGCTGGAGGACTATGCAACCCGAATGGACGACGACTTCAGGCGAACGGTACAGTAGCGACAGAACGAGGAGAAGAGATCGGACGTCGGCGTGCTTGCGTGGACGAAGCTTGGACTCGGCGGGATCTTGGCTTCGTCGGAAGTATAGACAGTTGGCAGTGGTTTGA

Protein sequence

MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRRKYRQLAVV*
Homology
[Close]
BLAST of CsaV3_5G020050.1 vs. NCBI nr
Match: KAE8648332.1 (hypothetical protein Csa_023077 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRR 60
          MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRR
Sbjct: 1  MKSTEGRRKRTVGLGWRTMQPEWTTTSGERYSSDRTRRRDRTSACLRGRSLDSAGSWLRR 60

Query: 61 KYRQLAVV 69
          KYRQLAVV
Sbjct: 61 KYRQLAVV 68

The following BLAST results are available for this feature:
BLAST of CsaV3_5G020050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648332.12.0e-29100.00hypothetical protein Csa_023077 [Cucumis sativus][more]
BLAST of CsaV3_5G020050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G020050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G020050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_5G020050CsaV3_5G020050gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G020050.1.exon1CsaV3_5G020050.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G020050.1.cds1CsaV3_5G020050.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_5G020050.1CsaV3_5G020050.1-proteinpolypeptide