Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTTACTTGAACATCCCTATCTTAGAAAAGATCAAAAGGAAACTAGAACTAGAAGTAAAGGTGACGAGGTAGCTATAGTTTTAAGAGGTGTTCCATCAAGTAACTATGGAACAAGAAAACTTCCAGGGAGACCCAAATTTCCAAGAGACCTTTGTTTGCCTCATCTGCAACGCATGCTTGGATTATGGA mRNA sequence ATGTTACTTGAACATCCCTATCTTAGAAAAGATCAAAAGGAAACTAGAACTAGAAGTAAAGGTGACGAGGTAGCTATAGTTTTAAGAGGTGTTCCATCAAGTAACTATGGAACAAGAAAACTTCCAGGGAGACCCAAATTTCCAAGAGACCTTTGTTTGCCTCATCTGCAACGCATGCTTGGATTATGGA Coding sequence (CDS) ATGTTACTTGAACATCCCTATCTTAGAAAAGATCAAAAGGAAACTAGAACTAGAAGTAAAGGTGACGAGGTAGCTATAGTTTTAAGAGGTGTTCCATCAAGTAACTATGGAACAAGAAAACTTCCAGGGAGACCCAAATTTCCAAGAGACCTTTGTTTGCCTCATCTGCAACGCATGCTTGGATTATGGA Protein sequence MLLEHPYLRKDQKETRTRSKGDEVAIVLRGVPSSNYGTRKLPGRPKFPRDLCLPHLQRMLGLWX
Homology
BLAST of CsaV3_1G033020.1 vs. NCBI nr
Match: KAE8653206.1 (hypothetical protein Csa_019527, partial [Cucumis sativus]) HSP 1 Score: 136.7 bits (343), Expect = 6.9e-29 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
Query: 1 MLLEHPYLRKDQKETRTRSKGDEVAIVLRGVPSSNYGTRKLPGRPKFPRDLCLPHLQRML 60
MLLEHPYLRKDQKETRTRSKGDEVAIVLRGVPSSNYGTRKLPGRPKFPRDLCLPHLQRML
Sbjct: 1 MLLEHPYLRKDQKETRTRSKGDEVAIVLRGVPSSNYGTRKLPGRPKFPRDLCLPHLQRML 60
Query: 61 GLW 64
GLW
Sbjct: 61 GLW 63
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8653206.1 | 6.9e-29 | 100.00 | hypothetical protein Csa_019527, partial [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..20 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_1G033020.1.exon1 | CsaV3_1G033020.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_1G033020.1.cds1 | CsaV3_1G033020.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_1G033020.1 | CsaV3_1G033020.1-protein | polypeptide |
|
