CsaV3_1G033020 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G033020
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 20064626 .. 20064815 (-)
RNA-Seq Expression	CsaV3_1G033020
Synteny	CsaV3_1G033020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACTTGAACATCCCTATCTTAGAAAAGATCAAAAGGAAACTAGAACTAGAAGTAAAGGTGACGAGGTAGCTATAGTTTTAAGAGGTGTTCCATCAAGTAACTATGGAACAAGAAAACTTCCAGGGAGACCCAAATTTCCAAGAGACCTTTGTTTGCCTCATCTGCAACGCATGCTTGGATTATGGA

mRNA sequence

ATGTTACTTGAACATCCCTATCTTAGAAAAGATCAAAAGGAAACTAGAACTAGAAGTAAAGGTGACGAGGTAGCTATAGTTTTAAGAGGTGTTCCATCAAGTAACTATGGAACAAGAAAACTTCCAGGGAGACCCAAATTTCCAAGAGACCTTTGTTTGCCTCATCTGCAACGCATGCTTGGATTATGGA

Coding sequence (CDS)

ATGTTACTTGAACATCCCTATCTTAGAAAAGATCAAAAGGAAACTAGAACTAGAAGTAAAGGTGACGAGGTAGCTATAGTTTTAAGAGGTGTTCCATCAAGTAACTATGGAACAAGAAAACTTCCAGGGAGACCCAAATTTCCAAGAGACCTTTGTTTGCCTCATCTGCAACGCATGCTTGGATTATGGA

Protein sequence

MLLEHPYLRKDQKETRTRSKGDEVAIVLRGVPSSNYGTRKLPGRPKFPRDLCLPHLQRMLGLWX

Homology

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BLAST of CsaV3_1G033020 vs. NCBI nr
Match: KAE8653206.1 (hypothetical protein Csa_019527, partial [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 6.9e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MLLEHPYLRKDQKETRTRSKGDEVAIVLRGVPSSNYGTRKLPGRPKFPRDLCLPHLQRML 60
          MLLEHPYLRKDQKETRTRSKGDEVAIVLRGVPSSNYGTRKLPGRPKFPRDLCLPHLQRML
Sbjct: 1  MLLEHPYLRKDQKETRTRSKGDEVAIVLRGVPSSNYGTRKLPGRPKFPRDLCLPHLQRML 60

Query: 61 GLW 64
          GLW
Sbjct: 61 GLW 63

The following BLAST results are available for this feature:

BLAST of CsaV3_1G033020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653206.1	6.9e-29	100.00	hypothetical protein Csa_019527, partial [Cucumis sativus]	[more]

BLAST of CsaV3_1G033020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G033020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G033020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G033020.1	CsaV3_1G033020.1	mRNA