Sequences
The following sequences are available for this feature:
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATTGTGTTTAGCAATATGGTCAGGAGGTTCGAGACAGATGAGAAAGGAATGTGTTGGGGAAGAATTACGAGAGTTAGA CTCATGGATTTCTGCTATGAATGTGGAAAGCTGGGGCACGTCCTTGAAGACTGCAGTTCTTCTTCTGATACAGCAGAGGAACAAGATTGCAATTCTCGTTTTGGTACTGGAGTGGAAGACTTGAGCTATGAAGACTGGCCTGGAGGGGTGAGAAAGGGAGGGGATGAGAAGTATAGAGAGTTGAGAATAGAAAACAGAGGAGGGCTGGGAAGGCTACTATAA
ATGGCCATTGTGTTTAGCAATATGGTCAGGAGGTTCGAGACAGATGAGAAAGGAATGTGTTGGGGAAGAATTACGAGAGTTAGACTCATGGATTTCTGCTATGAATGTGGAAAGCTGGGGCACGTCCTTGAAGACTGCAGTTCTTCTTCTGATACAGCAGAGGAACAAGATTGCAATTCTCGTTTTGGTACTGGAGTGGAAGACTTGAGCTATGAAGACTGGCCTGGAGGGGTGAGAAAGGGAGGGGATGAGAAGTATAGAGAGTTGAGAATAGAAAACAGAGGAGGGCTGGGAAGGCTACTATAA
ATGGCCATTGTGTTTAGCAATATGGTCAGGAGGTTCGAGACAGATGAGAAAGGAATGTGTTGGGGAAGAATTACGAGAGTTAGACTCATGGATTTCTGCTATGAATGTGGAAAGCTGGGGCACGTCCTTGAAGACTGCAGTTCTTCTTCTGATACAGCAGAGGAACAAGATTGCAATTCTCGTTTTGGTACTGGAGTGGAAGACTTGAGCTATGAAGACTGGCCTGGAGGGGTGAGAAAGGGAGGGGATGAGAAGTATAGAGAGTTGAGAATAGAAAACAGAGGAGGGCTGGGAAGGCTACTATAA
MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRLL*
Homology
BLAST of CsGy6G019823.1 vs. NCBI nr
Match:
KGN47724.1 (hypothetical protein Csa_018306 [Cucumis sativus])
HSP 1 Score: 215 bits (547), Expect = 1.80e-70
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of CsGy6G019823.1 vs. NCBI nr
Match:
OMP01185.1 (Zinc finger, CCHC-type [Corchorus olitorius])
HSP 1 Score: 54.7 bits (130), Expect = 8.11e-07
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 0
BLAST of CsGy6G019823.1 vs. NCBI nr
Match:
KAA0059920.1 (hypothetical protein E6C27_scaffold108G002250 [Cucumis melo var. makuwa] >TYK24867.1 hypothetical protein E5676_scaffold184G001360 [Cucumis melo var. makuwa])
HSP 1 Score: 53.1 bits (126), Expect = 3.18e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0
BLAST of CsGy6G019823.1 vs. ExPASy TrEMBL
Match:
A0A0A0KFU3 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385080 PE=4 SV=1)
HSP 1 Score: 215 bits (547), Expect = 8.73e-71
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of CsGy6G019823.1 vs. ExPASy TrEMBL
Match:
A0A1R3K269 (Zinc finger, CCHC-type OS=Corchorus olitorius OX=93759 GN=COLO4_12085 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 3.92e-07
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 0
BLAST of CsGy6G019823.1 vs. ExPASy TrEMBL
Match:
A0A5D3DML9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001360 PE=4 SV=1)
HSP 1 Score: 53.1 bits (126), Expect = 1.54e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
KGN47724.1 1.80e-70 100.00 hypothetical protein Csa_018306 [Cucumis sativus] [more] OMP01185.1 8.11e-07 37.68 Zinc finger, CCHC-type [Corchorus olitorius] [more] KAA0059920.1 3.18e-06 78.13 hypothetical protein E6C27_scaffold108G002250 [Cucumis melo var. makuwa] >TYK248... [more]
Match Name E-value Identity Description
A0A0A0KFU3 8.73e-71 100.00 CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385080 P... [more] A0A1R3K269 3.92e-07 37.68 Zinc finger, CCHC-type OS=Corchorus olitorius OX=93759 GN=COLO4_12085 PE=4 SV=1 [more] A0A5D3DML9 1.54e-06 78.13 Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
A T G G C C A T T G T G T T T A G C A A T A T G G T C A G G A G G T T C G A G A C A G A T G A G A A A G G A A T G T G T T G G G G A A G A A T T A C G A G A G T T A G A C T C A T G G A T T T C T G C T A T G A A T G T G G A A A G C T G G G G C A C G T C C T T G A A G A C T G C A G T T C T T C T T C T G A T A C A G C A G A G G A A C A A G A T T G C A A T T C T C G T T T T G G T A C T G G A G T G G A A G A C T T G A G C T A T G A A G A C T G G C C T G G A G G G G T G A G A A A G G G A G G G G A T G A G A A G T A T A G A G A G T T G A G A A T A G A A A A C A G A G G A G G G C T G G G A A G G C T A C T A T A A 50 100 150 200 250 300 Expect = 3.0E-4 / Score = 20.7 Score = 9.834029 Score = Sequence PF00098 PS50158 SSF57756
IPR Term IPR Description Source Source Term Source Description Alignment
IPR001878 Zinc finger, CCHC-type PFAM PF00098 zf-CCHC coord: 33..47 IPR001878 Zinc finger, CCHC-type PROSITE PS50158 ZF_CCHC coord: 33..46 IPR036875 Zinc finger, CCHC-type superfamily SUPERFAMILY 57756 Retrovirus zinc finger-like domains coord: 28..52
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
CsGy6G019823.1.exon2 CsGy6G019823.1.exon2 exon CsGy6G019823.1.exon1 CsGy6G019823.1.exon1 exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
cds.CsGy6G019823.1 cds.CsGy6G019823.1_2 CDS cds.CsGy6G019823.1 cds.CsGy6G019823.1 CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
CsGy6G019823.1 CsGy6G019823.1-protein polypeptide
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676 nucleic acid binding
molecular_function
GO:0008270 zinc ion binding
