CsGy6G019823.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G019823.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	CCHC-type domain-containing protein
Location	Gy14Chr6: 20419624 .. 20420030 (-)
Sequence length	306
RNA-Seq Expression	CsGy6G019823.1
Synteny	CsGy6G019823.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATTGTGTTTAGCAATATGGTCAGGAGGTTCGAGACAGATGAGAAAGGAATGTGTTGGGGAAGAATTACGAGAGTTAGAGTGAGTATTGATGTGAAAAAGCCTTTGAGAAGAGTGGTAAAGTGAAGTTGAAAGTTGGATCTATGGGAGAAGAAGTTTTTATACCTATCTCTTGTCAAAAGCTCATGGATTTCTGCTATGAATGTGGAAAGCTGGGGCACGTCCTTGAAGACTGCAGTTCTTCTTCTGATACAGCAGAGGAACAAGATTGCAATTCTCGTTTTGGTACTGGAGTGGAAGACTTGAGCTATGAAGACTGGCCTGGAGGGGTGAGAAAGGGAGGGGATGAGAAGTATAGAGAGTTGAGAATAGAAAACAGAGGAGGGCTGGGAAGGCTACTATAA

mRNA sequence

ATGGCCATTGTGTTTAGCAATATGGTCAGGAGGTTCGAGACAGATGAGAAAGGAATGTGTTGGGGAAGAATTACGAGAGTTAGACTCATGGATTTCTGCTATGAATGTGGAAAGCTGGGGCACGTCCTTGAAGACTGCAGTTCTTCTTCTGATACAGCAGAGGAACAAGATTGCAATTCTCGTTTTGGTACTGGAGTGGAAGACTTGAGCTATGAAGACTGGCCTGGAGGGGTGAGAAAGGGAGGGGATGAGAAGTATAGAGAGTTGAGAATAGAAAACAGAGGAGGGCTGGGAAGGCTACTATAA

Coding sequence (CDS)

ATGGCCATTGTGTTTAGCAATATGGTCAGGAGGTTCGAGACAGATGAGAAAGGAATGTGTTGGGGAAGAATTACGAGAGTTAGACTCATGGATTTCTGCTATGAATGTGGAAAGCTGGGGCACGTCCTTGAAGACTGCAGTTCTTCTTCTGATACAGCAGAGGAACAAGATTGCAATTCTCGTTTTGGTACTGGAGTGGAAGACTTGAGCTATGAAGACTGGCCTGGAGGGGTGAGAAAGGGAGGGGATGAGAAGTATAGAGAGTTGAGAATAGAAAACAGAGGAGGGCTGGGAAGGCTACTATAA

Protein sequence

MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRLL*

Homology

[Close]

BLAST of CsGy6G019823.1 vs. NCBI nr
Match: KGN47724.1 (hypothetical protein Csa_018306 [Cucumis sativus])

HSP 1 Score: 215 bits (547), Expect = 1.80e-70
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNS 60
           MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNS
Sbjct: 1   MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNS 60

Query: 61  RFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRLL 101
           RFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRLL
Sbjct: 61  RFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRLL 101

[Close]

BLAST of CsGy6G019823.1 vs. NCBI nr
Match: OMP01185.1 (Zinc finger, CCHC-type [Corchorus olitorius])

HSP 1 Score: 54.7 bits (130), Expect = 8.11e-07
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 0


Query: 8  MVRRFETD--EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTG 67
          +V+ F TD  ++G  W  +   RL DFCY CGKLGH  + C     + E+ + + RFG G
Sbjct: 7  LVKGFWTDRFDRGRVWVDLKYERLGDFCYNCGKLGHTDKSCDKEIKSFEQAERDGRFGPG 66

Query: 68 VEDLSYEDW 74
          +      DW
Sbjct: 67 MRVAPIRDW 75

[Close]

BLAST of CsGy6G019823.1 vs. NCBI nr
Match: KAA0059920.1 (hypothetical protein E6C27_scaffold108G002250 [Cucumis melo var. makuwa] >TYK24867.1 hypothetical protein E5676_scaffold184G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 3.18e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 38  KLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDL 69
           KLGH+ EDCSSS D AEE+DCNSRFGTG ED 
Sbjct: 94  KLGHIFEDCSSS-DIAEEKDCNSRFGTGEEDF 124

[Close]

BLAST of CsGy6G019823.1 vs. ExPASy TrEMBL
Match: A0A0A0KFU3 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385080 PE=4 SV=1)

HSP 1 Score: 215 bits (547), Expect = 8.73e-71
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNS 60
           MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNS
Sbjct: 1   MAIVFSNMVRRFETDEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNS 60

Query: 61  RFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRLL 101
           RFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRLL
Sbjct: 61  RFGTGVEDLSYEDWPGGVRKGGDEKYRELRIENRGGLGRLL 101

[Close]

BLAST of CsGy6G019823.1 vs. ExPASy TrEMBL
Match: A0A1R3K269 (Zinc finger, CCHC-type OS=Corchorus olitorius OX=93759 GN=COLO4_12085 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.92e-07
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 0


Query: 8  MVRRFETD--EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTG 67
          +V+ F TD  ++G  W  +   RL DFCY CGKLGH  + C     + E+ + + RFG G
Sbjct: 7  LVKGFWTDRFDRGRVWVDLKYERLGDFCYNCGKLGHTDKSCDKEIKSFEQAERDGRFGPG 66

Query: 68 VEDLSYEDW 74
          +      DW
Sbjct: 67 MRVAPIRDW 75

[Close]

BLAST of CsGy6G019823.1 vs. ExPASy TrEMBL
Match: A0A5D3DML9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001360 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.54e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 38  KLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDL 69
           KLGH+ EDCSSS D AEE+DCNSRFGTG ED 
Sbjct: 94  KLGHIFEDCSSS-DIAEEKDCNSRFGTGEEDF 124

The following BLAST results are available for this feature:

BLAST of CsGy6G019823.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G019823.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47724.1	1.80e-70	100.00	hypothetical protein Csa_018306 [Cucumis sativus]	[more]
OMP01185.1	8.11e-07	37.68	Zinc finger, CCHC-type [Corchorus olitorius]	[more]
KAA0059920.1	3.18e-06	78.13	hypothetical protein E6C27_scaffold108G002250 [Cucumis melo var. makuwa] >TYK248...	[more]

BLAST of CsGy6G019823.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFU3	8.73e-71	100.00	CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385080 P...	[more]
A0A1R3K269	3.92e-07	37.68	Zinc finger, CCHC-type OS=Corchorus olitorius OX=93759 GN=COLO4_12085 PE=4 SV=1	[more]
A0A5D3DML9	1.54e-06	78.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsGy6G019823.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 33..47 e-value: 3.0E-4 score: 20.7
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 33..46 score: 9.834029
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 28..52

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G019823	CsGy6G019823	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G019823.1.exon2	CsGy6G019823.1.exon2	exon
CsGy6G019823.1.exon1	CsGy6G019823.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy6G019823.1	cds.CsGy6G019823.1_2	CDS
cds.CsGy6G019823.1	cds.CsGy6G019823.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G019823.1	CsGy6G019823.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding