Cp4.1LG17g10970.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g10970.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG17: 8262372 .. 8268061 (+)
Sequence length	249
RNA-Seq Expression	Cp4.1LG17g10970.1
Synteny	Cp4.1LG17g10970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGTACTATAAATAGCATAGCATATTACAAGAACAGGTATTGCAAAACTCAACTTAATATCTGAGAGATAGTAACGTAAAGAGAAAGAGGCAACAATGGTGCAACTTCCGAAGTCTGCCGTGCTCAAATCAAAGTACAACCACAACTATTTGCGCTTCGTGAATGAAGCGTGTTCACCGGTGCGTACATTCATGCAGTACTCGGGGAAGGAGATTCTTAGTCCATTTACTCAGTTTGAGTTCGAGCAAGCTAAATGTGACCCATCTTTATACCATATAAAATGTTGTTACAACAACAAGTATTGGGTTAGTTTGGCTCGTGACCATCATTTTATTGTAGCGGGGGCTGACCAGAAAGATGAAGACAAATCCAAATGGACATGCACTCTATTTCGTCCGGTTTATGACAGTTGTCATCAATCGTTTCGGTTTTGTCATGTCCATCTTGGTTTAAATGTAGTCTTGTGGAGGGTTGGTCCCCCTTATGGAGAATGCTTACGTGCACAGTGGTCGGTTCCTGATAAAGATCTCTGCGATCTCAGTGTAGTTATTGACTCGGAATCACTGTGGTCATTACCTAAATTTATTGCCTTTAGAGGTGATAATGGTTCTTATCTCAGTGCTCGGTCAATTGACAATCATTCATATCTACAATTTTCATCCAACAATATTGACGATCCTACCGTTCAGATGGAGACCTTCATCACAAATGATGGAAAAATTCGTGTGAAGTCAGCTCACTTCCAAAAATTTTGGAGACGTGACACTTCTAATTGGATTTTCGCTGACTCTTGTGAGACCACTGCTCAAAATCTCGATACTTTGTTTTCGCCAACTAAACTTGCGTCCCACATTGTTGCTCTACGTAACTTGGGTAATAACAACTTTGTTAAAAGGTACACTTCAGCGAGCAAAGTAAGTTGTCTCATGGCAGCCGTGAAAAATATCGATGAATTTTCACACTTACAAATGGTTGAGCTTGTTCTTTCACGACAAATCAACAATGTCGTGTTTTATCTTTCTGATGCTAGAATCCGTGATCAAGTTGCTATCGTATTAGCAACTGCAGAAGCTGCAAATAGTTCGAACGTACCCAACACTGTCTGCTTGATTTTCTCGCATACAAACACCAGATCTAGCACATGGGATTCTTCTGTTTCTACGAAATTGGACGTCAAGACAATAATCGAAACAGGAGTTCCCCTCATTGTCGATGGAAAGACAATCGAAACATCGTCGACTAAGTTCGTTGGAGAATACAAATGGGGAGAAACTATAACAACATCCAAGATACAAGAGATCAAATATGAGGTAACTATACCACCGATGAGCAGTATTGTCGTTACCTTAAATGCAACTAAGGGCTCATGTGACGTTCCATTCTCATACAAACAAGTCGACATCCTCAAAGGTGGTAAAAAAGTTGAATATTGTTTGGACGATGGCGTTTACCATGGCACCAACTACTATAACCTTAAATACGAAACTAAAACGAAACCAATTTGTGGATGCCCAAACTAATAACAACGGTTCGACCTGAATAAAAATAACTATCTTTCAAATGTGTGCGCGTTTTCGGTTGTATTATGTAAAAGAATAAAATTATTGTAGTTTTGTCTACAATATCTATAAAGTTACGTGTATCATTATTTTCAATATTATCCGACCTTGTTTTTAGTTATTATATTGCAACAACAATAATAATTATAATAAAAAAAAAGGGTGTCACGAGGTGTGTCGGTTGTGGCCGCATGTCGGATGTTTCGATCATGTTTGTCTAGGGCATGTTGTCCATAGCTGCATGCCCGACCCAAACCCCTTTTACTGCTTTCATGTGTAGTTAGGTCTTTATTATCCATGTCATGTCAATACGGGAGGTGTATAACCATTTACCTTTTCTACTCGAGTTATATGCTATCAAAGTTGTAATCGTTGCTGATTCGCTTTTAGCCTGTAATATTGATTTATTTCAAATCATTTTCAACGCGTTCCTCGTTCACGTTTTATAAAACATTTTCTGTCAAACGTGACTCGAGATTCGATCATACTGACTTGTTCACAAACTCAAAACTCACGACTTTTCGAAAAGGGTTCGATGAGGTATCCTTAGCAAAACGACATGTGGAATCAAACTAATTTTTTATTCTTCCTAAGAATATTCATGAATAAAAGAAAATGAGAATATTTTCACTTTTTCGTAGAAAGGGATAATGATACGCTTCAGGTAAGAAAATAAGTTGTCTCATGACGGCCGTGTAAAATATTGATGAGCTTTCTCGTTGGACAAATGATTGAGCTTGTTCTTTCACCATAATTCAACAATGTCGTGTTTCGTCTCTCTGATACGGGAATTCGTGATCAAGTTATTATCATACCAGCGAATACACAAACGGAAAATAATTGAACGGGAAATACTTGTTCGACTTTCTTATATATAAACACCAAATCGAGCACATGAGCTTCTTCATTCTCAACGAATCCAATAAGAAACCGGTTCAATTGAACTTGTCAACTTCATCATCTTTATTGGTTCTAAGCAACTGCACCTTTTTTTTTGTTGCCTTTATTCCGTGATTTTAATGCAACAAGAATCATAAAGAACGATCAGGTCGAGAAAAATATCATGACAATTTAATATTATAAATAAAATATAACTTACGAGACTTTAAGATATAAAGTCTAAATACTTCAAATTTGGACCTTATAACAAAAATAGATGCCCGTCTTTGCCCGTCTTTTTCACTTTTAATATAATAAAGATAAGGACAAGATAAAAATATGCGTAAAGTGAGATGCGGAATCTGATCAATACATAGCAAAACGACATTTTTTTACCTTTTCTTTTTGTAGAAAAGATAACGAGAATATTTACGTGCAATTAGTAAAATGTATGCTTCTCGAGCTATAAATAGCATAGCACGTAACAAGGAAAAGTATAGCAACTCAACTTAGTGTCGACAAAGAGACAAGGATGGTGCAATTTCCGAGGTATGTAGTCCTCAAATCGAAGTATAATCACAACTACTTACGCTATTTGGATGGAACTTGTTCACGGGTGCATAAATTTCTACGGTACTCGGGAAAGGAGATTCTTACCCCATACACAAAGTTTGAGTTCGAACAAGCTAAATGTGACCCGTCGTTATTCCACATAAGGTGTTGTTACAATAACAAGTACTGGACTAGTTGGGCTTGTGACAAGCATTTTATTGTAGCGGGAGCTGACAAGAAAGAAGAAGACAAATCGAAATGGTCATGCACACTATTTCGTCCCGTTTATGACAGTTCTCATCAATCATTTCGATTTTGTCACGTTGGTCTTGGTTTCAACGTAGTCATATGGAGAGTTGGTCCTCCTTATGGAGGATGCTTACGTGCACAATGGTCCGTTCCTGATAGAGATCTCTGCGATCTCAGTATAGTTATTGATTGGGATTCACTGTGGTTATTGCCTAAATTTATTGCTTTTAAAGGTGATAATGGTTCTTATCTTAGTGCTCGGTCAATCGATTATCAACCATATCTACAATTTTCGTCCAAAAGTATCGACGATCCTAGCATTCAGATGGAGACATTCATTACAAACGATGGAAAAATTCGCATAAAATCAATTTTCTTCCAAAATTTTTGGAAACGCGGTACTTCTAATTGGATTTTTGCTGATTCTACTGATGATAGCTCGGAAAATCTCGATACTTTATTTTCGCCGACTCAGGTGTCTTCCACCGTTGTTGCTTTACGTAACTTAGGTAATGGCAACTTTGTCAAACGATACAGTCTTGCTAGCAAAGCAAACTTTCTCAACGCTGGAGCCAAAGAAATTGATAGCTTTTCACACTTACAAATGGTCGAGCCTATTCTTTCAAGAGAAATCAGCAACGTAATGTTTTATCTCTCCGAGGCTAGAATCTATGATGAAGCTGTTATCGTGTTAGCAACTAAAGAAGTCACAAATAATCTCCACATACCAAGCACTCTATGCATCCCGTTCTCATATACAAACACCAGATATAGCAAATGGGCTTCTTCAATCTCAATGAAATTAGATGTCAAGACAACAATTGACTCGGGAGTTCCCGTCATTGTTAACAGAAAGAAGATCGAGACATTATCAACTAAGTTTTCAGGAGAATACAAATGGGGAGAAACCATAACAATATCAAAGACAAAAGAGATAAAATACGAGGTAACTGTACCACCAACGAGCACGAGTATCGTTACCTTATATGCAACTAAGGGCTCGTGTGACGTTCCGTTCTCATACAAACAAGTTGACATCCTCATCGGCGGGAAAGAAGTTGAATCTTATTTAGCTGACGGTATTTACCATGGCACCAACTACTACAATCTTAAATATGAAGTTAAACCTAAACAAAACTGTGGATGTCCTAACGAAGACTGATACTATCATGATAATATAGACTCGAGGTAAAAGTGATGTCTTTAGATGTCCGTGTATGACTTACGTTGTAATATCTAAAAGAATAAAATTATTACCGTTTTCATCTACACGATCCTAATTACATTATTTAAGGACTATATGGCCAAAGATGAATTTTTGAAGAAAAGGATTAGACACATAATTAAACGCTTAATTATTTTAACAAGTACTGACTAGTTGGGCTAGTGACAAACATTTTATTGTAGCGGGAGCTAACGAGAAAGAAGAAGACAAATTCAAATGGTTGTGCACACTATTTCGTCCCGTTTATGACAGTTCTCATCAATCATTTTGATTTTGTCACGTTGGTCTTGGTTTTAACGTAGTCGTATGGCGAGTTGATCCTCTTTATGGAGGATGTTTATGTGCACAATGGTCGATTCCTAATAGAGATCTCTACGATCTCAGTATAGTTATTAGTTGGGAATTACTGTGGTCATTACCTAAATTTATTGCTTTTAAAGGTGATAATGGTTCTTATCTTAGTGTTCGCTCAATTGATAATCGTCCATATCTACAATTTTCATCCAACAATATTGACGATCCTACCATTCAGATGAAGACTTTCATCATAAATGATGGAAAAATTTGCATCAAGTCAGTTTACTTCCAGAAATTTTGGAGACGTGACGCTTCTAATTGGATTTTTGCTGAATATTGTGAGACGACGACTCAAAATCTCGATACTTTATTTTTGCCCACTAAAGTTTCACCCGACGTTGTTGCTCTTTGTAACTTGGGTAATGACAACTTTGTTAAAAGATATACTATAGGTAGCAAAATAAGTTATCTCATGGAAGCCATGAAAAATATCGATGAATTTTCACGCTTACATATGGTTGAACTTGTTCTTTCACGACAAATCAACAATGTCGTATTTTGTCTTTTTGATGCTAGGATCCATGATCAAGTTGTTATCGTATTAGCAACTACAAAAGTTGCAAATAATTCGAACGTAAACAATACTGAATGTGTGACTTTCTCATACACAAACAATGGATCGAGCACATGGGCTTCTTCAATCTCAACACAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGACAATGGATCGAGCATATAGGCTTCTTCAATCTTAACAAAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGATGGAAAGATGATTGAAACATTGTCAGCTAAGTTTGTAAGACTCAAGAGATGGTATATGAGGTTACTATACCACCATTGA

mRNA sequence

ATGCTGAAAGAGGCAACAATGGTGCAACTTCCGAAGTCTGCCGTGCTCAAATCAAAGTACAACCACAACTATTTGCGCTTCGTGAATGAAGCGTGTTCACCGGCTTCTTCAATCTTAACAAAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGATGGAAAGATGATTGAAACATTGTCAGCTAAGTTTGTAAGACTCAAGAGATGGTATATGAGGTTACTATACCACCATTGA

Coding sequence (CDS)

ATGCTGAAAGAGGCAACAATGGTGCAACTTCCGAAGTCTGCCGTGCTCAAATCAAAGTACAACCACAACTATTTGCGCTTCGTGAATGAAGCGTGTTCACCGGCTTCTTCAATCTTAACAAAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGATGGAAAGATGATTGAAACATTGTCAGCTAAGTTTGTAAGACTCAAGAGATGGTATATGAGGTTACTATACCACCATTGA

Protein sequence

MLKEATMVQLPKSAVLKSKYNHNYLRFVNEACSPASSILTKLDVKTTIEANIPLIVDGKMIETLSAKFVRLKRWYMRLLYHH

Homology

[Close]

BLAST of Cp4.1LG17g10970.1 vs. NCBI nr
Match: KAG6592983.1 (hypothetical protein SDJN03_12459, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 5.13e-09
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLPKSAVLKSKYNHNYLRFVNEACSP  + +
Sbjct: 1  MVQLPKSAVLKSKYNHNYLRFVNEACSPVRTFM 33

[Close]

BLAST of Cp4.1LG17g10970.1 vs. NCBI nr
Match: XP_023514586.1 (uncharacterized protein LOC111778837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.4 bits (150), Expect = 5.13e-09
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLPKSAVLKSKYNHNYLRFVNEACSP  + +
Sbjct: 1  MVQLPKSAVLKSKYNHNYLRFVNEACSPVRTFM 33

[Close]

BLAST of Cp4.1LG17g10970.1 vs. NCBI nr
Match: XP_022960506.1 (uncharacterized protein LOC111461222 [Cucurbita moschata])

HSP 1 Score: 60.8 bits (146), Expect = 7.75e-09
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLPKS VLKSKYNHNYLRFVNEACSP  + +
Sbjct: 1  MVQLPKSVVLKSKYNHNYLRFVNEACSPVRTFM 33

[Close]

BLAST of Cp4.1LG17g10970.1 vs. NCBI nr
Match: KAG6592984.1 (hypothetical protein SDJN03_12460, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 2.23e-07
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 35  ASSILTKLDVKTTIEANIPLIVDGKMIETLSAKF 68
           ASS+ TKLDVKT IEANIPLIVDGKMIET SAKF
Sbjct: 679 ASSVSTKLDVKTMIEANIPLIVDGKMIETSSAKF 712

[Close]

BLAST of Cp4.1LG17g10970.1 vs. NCBI nr
Match: XP_022960406.1 (uncharacterized protein LOC111461141 [Cucurbita moschata])

HSP 1 Score: 52.8 bits (125), Expect = 1.27e-05
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLP+ A LKSKYN NYLR++NE CSP  S L
Sbjct: 1  MVQLPRFAALKSKYNDNYLRYINETCSPVRSFL 33

[Close]

BLAST of Cp4.1LG17g10970.1 vs. ExPASy TrEMBL
Match: A0A6J1H7S9 (uncharacterized protein LOC111461222 OS=Cucurbita moschata OX=3662 GN=LOC111461222 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.75e-09
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLPKS VLKSKYNHNYLRFVNEACSP  + +
Sbjct: 1  MVQLPKSVVLKSKYNHNYLRFVNEACSPVRTFM 33

[Close]

BLAST of Cp4.1LG17g10970.1 vs. ExPASy TrEMBL
Match: A0A6J1H7H4 (uncharacterized protein LOC111461141 OS=Cucurbita moschata OX=3662 GN=LOC111461141 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.13e-06
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 7  MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
          MVQLP+ A LKSKYN NYLR++NE CSP  S L
Sbjct: 1  MVQLPRFAALKSKYNDNYLRYINETCSPVRSFL 33

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g10970.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g10970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592983.1	5.13e-09	84.85	hypothetical protein SDJN03_12459, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023514586.1	5.13e-09	84.85	uncharacterized protein LOC111778837 [Cucurbita pepo subsp. pepo]	[more]
XP_022960506.1	7.75e-09	81.82	uncharacterized protein LOC111461222 [Cucurbita moschata]	[more]
KAG6592984.1	2.23e-07	88.24	hypothetical protein SDJN03_12460, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022960406.1	1.27e-05	69.70	uncharacterized protein LOC111461141 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG17g10970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7S9	3.75e-09	81.82	uncharacterized protein LOC111461222 OS=Cucurbita moschata OX=3662 GN=LOC1114612...	[more]
A0A6J1H7H4	6.13e-06	69.70	uncharacterized protein LOC111461141 OS=Cucurbita moschata OX=3662 GN=LOC1114611...	[more]

BLAST of Cp4.1LG17g10970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG17g10970	Cp4.1LG17g10970	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g10970.1:exon:001	Cp4.1LG17g10970.1:exon:001	exon
Cp4.1LG17g10970.1:exon:002	Cp4.1LG17g10970.1:exon:002	exon
Cp4.1LG17g10970.1:exon:003	Cp4.1LG17g10970.1:exon:003	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g10970.1:cds:001	Cp4.1LG17g10970.1:cds:001	CDS
Cp4.1LG17g10970.1:cds:002	Cp4.1LG17g10970.1:cds:002	CDS
Cp4.1LG17g10970.1:cds:003	Cp4.1LG17g10970.1:cds:003	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g10970.1	Cp4.1LG17g10970.1-protein	polypeptide