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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCTGGTACTATAAATAGCATAGCATATTACAAGAACAGGTATTGCAAAACTCAACTTAATATCTGAGAGATAGTAACGTAAAGAGAAAGAGGCAACAATGGTGCAACTTCCGAAGTCTGCCGTGCTCAAATCAAAGTACAACCACAACTATTTGCGCTTCGTGAATGAAGCGTGTTCACCGGTGCGTACATTCATGCAGTACTCGGGGAAGGAGATTCTTAGTCCATTTACTCAGTTTGAGTTCGAGCAAGCTAAATGTGACCCATCTTTATACCATATAAAATGTTGTTACAACAACAAGTATTGGGTTAGTTTGGCTCGTGACCATCATTTTATTGTAGCGGGGGCTGACCAGAAAGATGAAGACAAATCCAAATGGACATGCACTCTATTTCGTCCGGTTTATGACAGTTGTCATCAATCGTTTCGGTTTTGTCATGTCCATCTTGGTTTAAATGTAGTCTTGTGGAGGGTTGGTCCCCCTTATGGAGAATGCTTACGTGCACAGTGGTCGGTTCCTGATAAAGATCTCTGCGATCTCAGTGTAGTTATTGACTCGGAATCACTGTGGTCATTACCTAAATTTATTGCCTTTAGAGGTGATAATGGTTCTTATCTCAGTGCTCGGTCAATTGACAATCATTCATATCTACAATTTTCATCCAACAATATTGACGATCCTACCGTTCAGATGGAGACCTTCATCACAAATGATGGAAAAATTCGTGTGAAGTCAGCTCACTTCCAAAAATTTTGGAGACGTGACACTTCTAATTGGATTTTCGCTGACTCTTGTGAGACCACTGCTCAAAATCTCGATACTTTGTTTTCGCCAACTAAACTTGCGTCCCACATTGTTGCTCTACGTAACTTGGGTAATAACAACTTTGTTAAAAGGTACACTTCAGCGAGCAAAGTAAGTTGTCTCATGGCAGCCGTGAAAAATATCGATGAATTTTCACACTTACAAATGGTTGAGCTTGTTCTTTCACGACAAATCAACAATGTCGTGTTTTATCTTTCTGATGCTAGAATCCGTGATCAAGTTGCTATCGTATTAGCAACTGCAGAAGCTGCAAATAGTTCGAACGTACCCAACACTGTCTGCTTGATTTTCTCGCATACAAACACCAGATCTAGCACATGGGATTCTTCTGTTTCTACGAAATTGGACGTCAAGACAATAATCGAAACAGGAGTTCCCCTCATTGTCGATGGAAAGACAATCGAAACATCGTCGACTAAGTTCGTTGGAGAATACAAATGGGGAGAAACTATAACAACATCCAAGATACAAGAGATCAAATATGAGGTAACTATACCACCGATGAGCAGTATTGTCGTTACCTTAAATGCAACTAAGGGCTCATGTGACGTTCCATTCTCATACAAACAAGTCGACATCCTCAAAGGTGGTAAAAAAGTTGAATATTGTTTGGACGATGGCGTTTACCATGGCACCAACTACTATAACCTTAAATACGAAACTAAAACGAAACCAATTTGTGGATGCCCAAACTAATAACAACGGTTCGACCTGAATAAAAATAACTATCTTTCAAATGTGTGCGCGTTTTCGGTTGTATTATGTAAAAGAATAAAATTATTGTAGTTTTGTCTACAATATCTATAAAGTTACGTGTATCATTATTTTCAATATTATCCGACCTTGTTTTTAGTTATTATATTGCAACAACAATAATAATTATAATAAAAAAAAAGGGTGTCACGAGGTGTGTCGGTTGTGGCCGCATGTCGGATGTTTCGATCATGTTTGTCTAGGGCATGTTGTCCATAGCTGCATGCCCGACCCAAACCCCTTTTACTGCTTTCATGTGTAGTTAGGTCTTTATTATCCATGTCATGTCAATACGGGAGGTGTATAACCATTTACCTTTTCTACTCGAGTTATATGCTATCAAAGTTGTAATCGTTGCTGATTCGCTTTTAGCCTGTAATATTGATTTATTTCAAATCATTTTCAACGCGTTCCTCGTTCACGTTTTATAAAACATTTTCTGTCAAACGTGACTCGAGATTCGATCATACTGACTTGTTCACAAACTCAAAACTCACGACTTTTCGAAAAGGGTTCGATGAGGTATCCTTAGCAAAACGACATGTGGAATCAAACTAATTTTTTATTCTTCCTAAGAATATTCATGAATAAAAGAAAATGAGAATATTTTCACTTTTTCGTAGAAAGGGATAATGATACGCTTCAGGTAAGAAAATAAGTTGTCTCATGACGGCCGTGTAAAATATTGATGAGCTTTCTCGTTGGACAAATGATTGAGCTTGTTCTTTCACCATAATTCAACAATGTCGTGTTTCGTCTCTCTGATACGGGAATTCGTGATCAAGTTATTATCATACCAGCGAATACACAAACGGAAAATAATTGAACGGGAAATACTTGTTCGACTTTCTTATATATAAACACCAAATCGAGCACATGAGCTTCTTCATTCTCAACGAATCCAATAAGAAACCGGTTCAATTGAACTTGTCAACTTCATCATCTTTATTGGTTCTAAGCAACTGCACCTTTTTTTTTGTTGCCTTTATTCCGTGATTTTAATGCAACAAGAATCATAAAGAACGATCAGGTCGAGAAAAATATCATGACAATTTAATATTATAAATAAAATATAACTTACGAGACTTTAAGATATAAAGTCTAAATACTTCAAATTTGGACCTTATAACAAAAATAGATGCCCGTCTTTGCCCGTCTTTTTCACTTTTAATATAATAAAGATAAGGACAAGATAAAAATATGCGTAAAGTGAGATGCGGAATCTGATCAATACATAGCAAAACGACATTTTTTTACCTTTTCTTTTTGTAGAAAAGATAACGAGAATATTTACGTGCAATTAGTAAAATGTATGCTTCTCGAGCTATAAATAGCATAGCACGTAACAAGGAAAAGTATAGCAACTCAACTTAGTGTCGACAAAGAGACAAGGATGGTGCAATTTCCGAGGTATGTAGTCCTCAAATCGAAGTATAATCACAACTACTTACGCTATTTGGATGGAACTTGTTCACGGGTGCATAAATTTCTACGGTACTCGGGAAAGGAGATTCTTACCCCATACACAAAGTTTGAGTTCGAACAAGCTAAATGTGACCCGTCGTTATTCCACATAAGGTGTTGTTACAATAACAAGTACTGGACTAGTTGGGCTTGTGACAAGCATTTTATTGTAGCGGGAGCTGACAAGAAAGAAGAAGACAAATCGAAATGGTCATGCACACTATTTCGTCCCGTTTATGACAGTTCTCATCAATCATTTCGATTTTGTCACGTTGGTCTTGGTTTCAACGTAGTCATATGGAGAGTTGGTCCTCCTTATGGAGGATGCTTACGTGCACAATGGTCCGTTCCTGATAGAGATCTCTGCGATCTCAGTATAGTTATTGATTGGGATTCACTGTGGTTATTGCCTAAATTTATTGCTTTTAAAGGTGATAATGGTTCTTATCTTAGTGCTCGGTCAATCGATTATCAACCATATCTACAATTTTCGTCCAAAAGTATCGACGATCCTAGCATTCAGATGGAGACATTCATTACAAACGATGGAAAAATTCGCATAAAATCAATTTTCTTCCAAAATTTTTGGAAACGCGGTACTTCTAATTGGATTTTTGCTGATTCTACTGATGATAGCTCGGAAAATCTCGATACTTTATTTTCGCCGACTCAGGTGTCTTCCACCGTTGTTGCTTTACGTAACTTAGGTAATGGCAACTTTGTCAAACGATACAGTCTTGCTAGCAAAGCAAACTTTCTCAACGCTGGAGCCAAAGAAATTGATAGCTTTTCACACTTACAAATGGTCGAGCCTATTCTTTCAAGAGAAATCAGCAACGTAATGTTTTATCTCTCCGAGGCTAGAATCTATGATGAAGCTGTTATCGTGTTAGCAACTAAAGAAGTCACAAATAATCTCCACATACCAAGCACTCTATGCATCCCGTTCTCATATACAAACACCAGATATAGCAAATGGGCTTCTTCAATCTCAATGAAATTAGATGTCAAGACAACAATTGACTCGGGAGTTCCCGTCATTGTTAACAGAAAGAAGATCGAGACATTATCAACTAAGTTTTCAGGAGAATACAAATGGGGAGAAACCATAACAATATCAAAGACAAAAGAGATAAAATACGAGGTAACTGTACCACCAACGAGCACGAGTATCGTTACCTTATATGCAACTAAGGGCTCGTGTGACGTTCCGTTCTCATACAAACAAGTTGACATCCTCATCGGCGGGAAAGAAGTTGAATCTTATTTAGCTGACGGTATTTACCATGGCACCAACTACTACAATCTTAAATATGAAGTTAAACCTAAACAAAACTGTGGATGTCCTAACGAAGACTGATACTATCATGATAATATAGACTCGAGGTAAAAGTGATGTCTTTAGATGTCCGTGTATGACTTACGTTGTAATATCTAAAAGAATAAAATTATTACCGTTTTCATCTACACGATCCTAATTACATTATTTAAGGACTATATGGCCAAAGATGAATTTTTGAAGAAAAGGATTAGACACATAATTAAACGCTTAATTATTTTAACAAGTACTGACTAGTTGGGCTAGTGACAAACATTTTATTGTAGCGGGAGCTAACGAGAAAGAAGAAGACAAATTCAAATGGTTGTGCACACTATTTCGTCCCGTTTATGACAGTTCTCATCAATCATTTTGATTTTGTCACGTTGGTCTTGGTTTTAACGTAGTCGTATGGCGAGTTGATCCTCTTTATGGAGGATGTTTATGTGCACAATGGTCGATTCCTAATAGAGATCTCTACGATCTCAGTATAGTTATTAGTTGGGAATTACTGTGGTCATTACCTAAATTTATTGCTTTTAAAGGTGATAATGGTTCTTATCTTAGTGTTCGCTCAATTGATAATCGTCCATATCTACAATTTTCATCCAACAATATTGACGATCCTACCATTCAGATGAAGACTTTCATCATAAATGATGGAAAAATTTGCATCAAGTCAGTTTACTTCCAGAAATTTTGGAGACGTGACGCTTCTAATTGGATTTTTGCTGAATATTGTGAGACGACGACTCAAAATCTCGATACTTTATTTTTGCCCACTAAAGTTTCACCCGACGTTGTTGCTCTTTGTAACTTGGGTAATGACAACTTTGTTAAAAGATATACTATAGGTAGCAAAATAAGTTATCTCATGGAAGCCATGAAAAATATCGATGAATTTTCACGCTTACATATGGTTGAACTTGTTCTTTCACGACAAATCAACAATGTCGTATTTTGTCTTTTTGATGCTAGGATCCATGATCAAGTTGTTATCGTATTAGCAACTACAAAAGTTGCAAATAATTCGAACGTAAACAATACTGAATGTGTGACTTTCTCATACACAAACAATGGATCGAGCACATGGGCTTCTTCAATCTCAACACAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGACAATGGATCGAGCATATAGGCTTCTTCAATCTTAACAAAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGATGGAAAGATGATTGAAACATTGTCAGCTAAGTTTGTAAGACTCAAGAGATGGTATATGAGGTTACTATACCACCATTGA mRNA sequence ATGCTGAAAGAGGCAACAATGGTGCAACTTCCGAAGTCTGCCGTGCTCAAATCAAAGTACAACCACAACTATTTGCGCTTCGTGAATGAAGCGTGTTCACCGGCTTCTTCAATCTTAACAAAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGATGGAAAGATGATTGAAACATTGTCAGCTAAGTTTGTAAGACTCAAGAGATGGTATATGAGGTTACTATACCACCATTGA Coding sequence (CDS) ATGCTGAAAGAGGCAACAATGGTGCAACTTCCGAAGTCTGCCGTGCTCAAATCAAAGTACAACCACAACTATTTGCGCTTCGTGAATGAAGCGTGTTCACCGGCTTCTTCAATCTTAACAAAATTGGACGTCAAGACAACGATCGAAGCAAATATTCCGCTCATTGTTGATGGAAAGATGATTGAAACATTGTCAGCTAAGTTTGTAAGACTCAAGAGATGGTATATGAGGTTACTATACCACCATTGA Protein sequence MLKEATMVQLPKSAVLKSKYNHNYLRFVNEACSPASSILTKLDVKTTIEANIPLIVDGKMIETLSAKFVRLKRWYMRLLYHH
Homology
BLAST of Cp4.1LG17g10970.1 vs. NCBI nr
Match: KAG6592983.1 (hypothetical protein SDJN03_12459, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 62.4 bits (150), Expect = 5.13e-09 Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0
Query: 7 MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
MVQLPKSAVLKSKYNHNYLRFVNEACSP + +
Sbjct: 1 MVQLPKSAVLKSKYNHNYLRFVNEACSPVRTFM 33
BLAST of Cp4.1LG17g10970.1 vs. NCBI nr
Match: XP_023514586.1 (uncharacterized protein LOC111778837 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 62.4 bits (150), Expect = 5.13e-09 Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0
Query: 7 MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
MVQLPKSAVLKSKYNHNYLRFVNEACSP + +
Sbjct: 1 MVQLPKSAVLKSKYNHNYLRFVNEACSPVRTFM 33
BLAST of Cp4.1LG17g10970.1 vs. NCBI nr
Match: XP_022960506.1 (uncharacterized protein LOC111461222 [Cucurbita moschata]) HSP 1 Score: 60.8 bits (146), Expect = 7.75e-09 Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0
Query: 7 MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
MVQLPKS VLKSKYNHNYLRFVNEACSP + +
Sbjct: 1 MVQLPKSVVLKSKYNHNYLRFVNEACSPVRTFM 33
BLAST of Cp4.1LG17g10970.1 vs. NCBI nr
Match: KAG6592984.1 (hypothetical protein SDJN03_12460, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 57.8 bits (138), Expect = 2.23e-07 Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0
Query: 35 ASSILTKLDVKTTIEANIPLIVDGKMIETLSAKF 68
ASS+ TKLDVKT IEANIPLIVDGKMIET SAKF
Sbjct: 679 ASSVSTKLDVKTMIEANIPLIVDGKMIETSSAKF 712
BLAST of Cp4.1LG17g10970.1 vs. NCBI nr
Match: XP_022960406.1 (uncharacterized protein LOC111461141 [Cucurbita moschata]) HSP 1 Score: 52.8 bits (125), Expect = 1.27e-05 Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0
Query: 7 MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
MVQLP+ A LKSKYN NYLR++NE CSP S L
Sbjct: 1 MVQLPRFAALKSKYNDNYLRYINETCSPVRSFL 33
BLAST of Cp4.1LG17g10970.1 vs. ExPASy TrEMBL
Match: A0A6J1H7S9 (uncharacterized protein LOC111461222 OS=Cucurbita moschata OX=3662 GN=LOC111461222 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 3.75e-09 Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0
Query: 7 MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
MVQLPKS VLKSKYNHNYLRFVNEACSP + +
Sbjct: 1 MVQLPKSVVLKSKYNHNYLRFVNEACSPVRTFM 33
BLAST of Cp4.1LG17g10970.1 vs. ExPASy TrEMBL
Match: A0A6J1H7H4 (uncharacterized protein LOC111461141 OS=Cucurbita moschata OX=3662 GN=LOC111461141 PE=4 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 6.13e-06 Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0
Query: 7 MVQLPKSAVLKSKYNHNYLRFVNEACSPASSIL 39
MVQLP+ A LKSKYN NYLR++NE CSP S L
Sbjct: 1 MVQLPRFAALKSKYNDNYLRYINETCSPVRSFL 33
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6592983.1 | 5.13e-09 | 84.85 | hypothetical protein SDJN03_12459, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023514586.1 | 5.13e-09 | 84.85 | uncharacterized protein LOC111778837 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022960506.1 | 7.75e-09 | 81.82 | uncharacterized protein LOC111461222 [Cucurbita moschata] | [more] |
| KAG6592984.1 | 2.23e-07 | 88.24 | hypothetical protein SDJN03_12460, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022960406.1 | 1.27e-05 | 69.70 | uncharacterized protein LOC111461141 [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1H7S9 | 3.75e-09 | 81.82 | uncharacterized protein LOC111461222 OS=Cucurbita moschata OX=3662 GN=LOC1114612... | [more] |
| A0A6J1H7H4 | 6.13e-06 | 69.70 | uncharacterized protein LOC111461141 OS=Cucurbita moschata OX=3662 GN=LOC1114611... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Cp4.1LG17g10970.1:exon:001 | Cp4.1LG17g10970.1:exon:001 | exon |
| Cp4.1LG17g10970.1:exon:002 | Cp4.1LG17g10970.1:exon:002 | exon |
| Cp4.1LG17g10970.1:exon:003 | Cp4.1LG17g10970.1:exon:003 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Cp4.1LG17g10970.1:cds:001 | Cp4.1LG17g10970.1:cds:001 | CDS |
| Cp4.1LG17g10970.1:cds:002 | Cp4.1LG17g10970.1:cds:002 | CDS |
| Cp4.1LG17g10970.1:cds:003 | Cp4.1LG17g10970.1:cds:003 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Cp4.1LG17g10970.1 | Cp4.1LG17g10970.1-protein | polypeptide |
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