|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCCGTTTTTATGTTTAGAAACTTGGATTTTGGTGAATCTACAGGTTTTTGATGAAGCTGAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTATCCTTCTTACTTTCACTCACAACCACGCACATTGATATTTTCTTAATCTTGTTAAACCCTAGATTTACCAACTTTGTAGCAGAGCTTTTTTTAACTTCCAACTTCTGTTTTGTTTTCTTCTTTGAACTCCACTGTAGTGAAAGTTGTAGAATGTTTCAGTTGGAAGGGATAGTTGGAATATGGGTTCTACTGTCAATTTGGAGTGGTTTATGATTTATCTTGAACCTTCTTGTTCTTGATAATTTGGCTTACATAGATTTTTCTCTGCTACATTGCTGCTAGAAATTTAATTAATGTTTCGTTTAAAACTGTGTGTGACTATTTTTGTTGCGATGGCTGAAGTACATTGCTACTATTAGTCACGCCAAGGTTCAGTCTGTCCGCCAGTGTACGATAATCGTTTTTCTTGCTTATGTCTCACAACTATCTCCCAACATTTGTTCCTGCAATTGTGTAGTTGTGTAAGCTAACTGAAGAGTTCTGGCAAGCGCGCGCTTGGAGAACCGCTATCCCACTCCCATTTTGAATCTTAAAAAATAGTTAGCTAGTAGATATTGTCCTCTTTGGGTTTTCCCTTTCGAGCTTCCCTTCAAAGTTTTTAAAACGCGTTTGGTAGGGAGAAGTTTCCACACCCTTATAAAGAATGCTTTGTTCTCCTCCCCAACCAGTGTGGGATCTCACAATCCACCCCCCTTCAGGGGCCTAGTGTCTTCGTTGGCACTCGTTCCCTTCTCCAATCAATGTGGGACCTCCAATCCACCCCTCTTCGGGGCTCAGCCTCCTCGCTGGCACATCGTCCGATTTCTAGCTCTGATACCATTTGTAACAGTCTAAGCCCACCACTAGCAGATAATGTCCTCTTTGGGTTTTCCCTTTCGGGCTTCCTCTCAAGGTTTTTAAAACGTGTCTTCTAGGGAGAGGTTTCCACACTCTTATAAATAATGCTTCGTTCTCCTCCTCAACTGATATGGGATCTTCAACTATCATCATTTAAAAAAAAAAAAAAAAAACTAGTATTAAACTCATAGGTTGCTAACGGGCAATTAAATTCCTTGTCATCTGAGCGTTGGGAGGATGCGGTGTTTTCTCTGTATAGTTTTTATTTTTATCATTATTAATAAACAAATCAATTTGAACTATTGACTACTGTCTACTGATGCTGAATGTCCATTCTATTTCATGGCATTATCAGTAGATTTAAACAAATCTTTTGAATGTCCTCTCACATTTATATGGACTGATTCCTACTATTCCTTCTTTCCCCTTTGTTTTGTAGGGGTTGATTCTTGATCTAATAGAATTATTTTGCTGTATCTTGATCTAATAGAATTATTTTTGGTTTATCCAGACTAATATCAATCCAACCCATTTCATGAATAAAATGTGACCAAAACCAAGTGAATATACTTCAACTTTTAACTTGAACTGTTTTTCACATGCACTAGAATGGCATGAACTTAGTCTGATTAAACACTAACTTCTGCTGAACACCAGTATTTTTGGATTTTGTTTCTCATATGCCATTCTTCGGTGCATTATGATATATGCCATCCTTGCGTTTTGGGTTTTGTCTGGGTTTTGTCTTCTTTATCGTTTGAAACGTAATAATATTTACCATCCCTAAACCCTTGCATTTAGGGTTTTTCTTCTTTATTAATTAATAAAAAAATTATATATAGTGCACATTACAAAAGAAAGGTCTTGCTTTTTTATTTTTTTGCTCCTTGCACGACATAAGACTATTGTTCCTTGAGCTTTAAAAAACACTGATTACAACAGAATATGAATATCTTTTATTTGAATAACCATTGTAAAATGTTTGCGATACATTACCAATAGAATCTATAATAGATTATTTTTTCCTTAAGAAATCCATAGAAGCACAATTCCAAAAGATTTTAGCCTTAAATTTAAGCCATCAGGCTGTGAGGGCTTCCAAGAAAAATCGTCAACCAAGCTGGGTTGGCATAAACAGAAACCAGGCTCATTGAACATGAAAGACCACCTCCTATAGAAAAAGGTCAGTGGAGGTAATGGTAATTTTGGGTTTCATCATAGGAATAGCAAAGGAACAAACCAGGGAGAGAACCCAATTTTGAAACTTTTTTTGAGCCGCTTGGGGTGTTGAGGTTTCTTTAAGTAAGTGACCACACAATCAGATTAACCTTCCTGGGGACGTTAAACTTCCAAACTGATTTAACCAAAGGAGTTTTCAGCTTTAGCAAGGTCATAGAGAGTTTAATGAAAGCGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGTATCAATGTGTCCTATAAAGGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACTCCACAATTATCCCCCAATATTACCTATGGTTTTGGTTTAGGCTTCTTTGCCTATCTTTCTGGTTTAACCCCTTGTTGCCAACCATCACTCTTCTCCCTAAGCATTTAAGAATTAGGGCGTTATTTCTCTACTTCTGGAAAGAGCCAATGGAAGGGAAGTCCAACTCCCTTTTAATGGGTGACTCAGGAGTTGGTGAATATTGATTAGATTGCATTAAGAAGTAGGATGTTATTTTCTCTACTTCTGGGAAGAGCCAATTGAAGGAAAGTCCCAACTCCCTTTTATTGGGTGCTTCCACTTAGAGTCGTTTCTCACAAGATGCCTTTATGGGAGAGTTGGGACTCAATTTCATAATTTTAGTTGGTTACCTCTTTTGTGGGAGGATTTCAACTGAGATTATAAACAATGTTTTAAAAAGCTAAAGTCAGCCTTGAGACTTTTCCACCGGTGGAGGCGTGGTGAAAGCCTCAAGGTGGTATGAAGCATAAGACTAATTTAATTAAATTTTTTTTTACCAAGTATTGATAAACAAACTTAGTAATCATAAAAAGTTAAAAAAAAAAAAAACCTATGAAGCATGACACATATGTCCGGACATGCTTTGGCCATGCGATACATGGCTAGACACACCTCTAGATAATATTTAACCCATAAAATAGGGGAAATTTTGAGATTTTCTTATAGATTGAATCTTTAAATATTGATCAATCCTAAAGTATTAGGATGACATGTTCATCCTCTTGCAGCCAACTAATCTTTTTATATGTTTTAAGGTTTCAAATATTGTTAATTGACTTAACTATGGATGTTTTTAGTGAAGCATATTTTATTTTTATGTTTAATTCACATTTTGTCTATTAAAAAAACAGACTAATATACCTATATCGACACATATTTTATATAAAAAAACATGTCCCCAAGGTGCTTGTGTCCTACTTTTTAAGAATTTGATGTGTCTCAGTGTTTATGTCATTGTCTTGTATCTGTGCTTCTTAGATCATTCATGTCAATTGCACCTAAACATAAACTCTAAAGTGATATCATTAACGTCACTATTGTTATCATTAAGAGGAATCACTGTTTGGTTGATTTTGAGTGATTCTCGTGTTTCATAGGTGTGGACATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTTCTGCAAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGGCGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGACGTAGCCTTACTATGTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTTAATATCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCCAACTTTGATAGACGTAGTCATGCAGTTCTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAA mRNA sequence ATGGCCAAATCCATAGAAGCACAATTCCAAAAGATTTTAGCCTTAAATTTAAGCCATCAGGCTGTGAGGGCTTCCAAGAAAAATCGTCAACCAAGCTGGCAAGGTCATAGAGAGTTTAATGAAAGCGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACTCCACAATTATCCCCCAATATTACCTATGCTAAAGTCAGCCTTGAGACTTTTCCACCGGTGGAGGCGTGGTGAAAGCCTCAAGGTGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTTCTGCAAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGGCGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGCCTTACTATGTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTTAATATCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCCAACTTTGATAGACGTAGTCATGCAGTTCTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAA Coding sequence (CDS) ATGGCCAAATCCATAGAAGCACAATTCCAAAAGATTTTAGCCTTAAATTTAAGCCATCAGGCTGTGAGGGCTTCCAAGAAAAATCGTCAACCAAGCTGGCAAGGTCATAGAGAGTTTAATGAAAGCGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACTCCACAATTATCCCCCAATATTACCTATGCTAAAGTCAGCCTTGAGACTTTTCCACCGGTGGAGGCGTGGTGAAAGCCTCAAGGTGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTTCTGCAAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGGCGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGCCTTACTATGTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTTAATATCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCCAACTTTGATAGACGTAGTCATGCAGTTCTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAA Protein sequence MAKSIEAQFQKILALNLSHQAVRASKKNRQPSWQGHREFNESDLEEKQLNESMYSTSLGQLLIETLYNYQFLYEKSEQALHNYPPILPMLKSALRLFHRWRRGESLKVRHRGSSRRNQLQVRVVLVFMPILMVIFCKSTCVYRIIYYPLSNVLLMHFYTLLQLQGSLWDVDEDVGVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDALLCFFDAWGLLLIYTLNIITMIKLWHVSRLESRLLSSNFDRRSHAVLKLVTMKDYCVKSFL
Homology
BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match: KAG6593429.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 147 bits (370), Expect = 1.10e-39 Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0
Query: 135 FCKSTCVYRIIYYPLSNVLLMHFYTLLQLQGSLWDVDEDVGVGAVVVVDARFVAVVSSFE 194
FC+STCVYRIIYYPLSNVLL HFYTLLQLQGSLWDVDEDV VGAVVVVDARFVAVVSSFE
Sbjct: 94 FCESTCVYRIIYYPLSNVLLKHFYTLLQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFE 153
Query: 195 TGSVNTCIVAKDSEFSDAL 213
TGSVNTCIVAKDSEFSD +
Sbjct: 154 TGSVNTCIVAKDSEFSDGI 172
BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match: KAG6571478.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 96.7 bits (239), Expect = 1.46e-19 Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0
Query: 162 QLQGSLWDVDEDVGVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD 211
QLQGSLWDVDEDV VGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD
Sbjct: 69 QLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD 118
BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match: KAG6606428.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 66.6 bits (161), Expect = 7.51e-09 Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0
Query: 163 LQGSLWDVDEDVGVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD 211
LQGSLW VDED VG VVVVDARFVAV S+F+ SVNTCI+ K EFSD
Sbjct: 70 LQGSLWGVDEDEAVGVVVVVDARFVAV-SNFDLRSVNTCILGKVCEFSD 117
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6593429.1 | 1.10e-39 | 93.67 | Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so... | [more] |
| KAG6571478.1 | 1.46e-19 | 98.00 | Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so... | [more] |
| KAG6606428.1 | 7.51e-09 | 73.47 | Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Cp4.1LG15g00540.1:exon:001 | Cp4.1LG15g00540.1:exon:001 | exon |
| Cp4.1LG15g00540.1:exon:002 | Cp4.1LG15g00540.1:exon:002 | exon |
| Cp4.1LG15g00540.1:exon:003 | Cp4.1LG15g00540.1:exon:003 | exon |
| Cp4.1LG15g00540.1:exon:004 | Cp4.1LG15g00540.1:exon:004 | exon |
| Cp4.1LG15g00540.1:exon:005 | Cp4.1LG15g00540.1:exon:005 | exon |
| Cp4.1LG15g00540.1:exon:006 | Cp4.1LG15g00540.1:exon:006 | exon |
| Cp4.1LG15g00540.1:exon:007 | Cp4.1LG15g00540.1:exon:007 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Cp4.1LG15g00540.1:cds:001 | Cp4.1LG15g00540.1:cds:001 | CDS |
| Cp4.1LG15g00540.1:cds:002 | Cp4.1LG15g00540.1:cds:002 | CDS |
| Cp4.1LG15g00540.1:cds:003 | Cp4.1LG15g00540.1:cds:003 | CDS |
| Cp4.1LG15g00540.1:cds:004 | Cp4.1LG15g00540.1:cds:004 | CDS |
| Cp4.1LG15g00540.1:cds:005 | Cp4.1LG15g00540.1:cds:005 | CDS |
| Cp4.1LG15g00540.1:cds:006 | Cp4.1LG15g00540.1:cds:006 | CDS |
| Cp4.1LG15g00540.1:cds:007 | Cp4.1LG15g00540.1:cds:007 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Cp4.1LG15g00540.1 | Cp4.1LG15g00540.1-protein | polypeptide |
|
