Cp4.1LG15g00540.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g00540.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG15: 285924 .. 290274 (-)
Sequence length	822
RNA-Seq Expression	Cp4.1LG15g00540.1
Synteny	Cp4.1LG15g00540.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTTTTTATGTTTAGAAACTTGGATTTTGGTGAATCTACAGGTTTTTGATGAAGCTGAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTATCCTTCTTACTTTCACTCACAACCACGCACATTGATATTTTCTTAATCTTGTTAAACCCTAGATTTACCAACTTTGTAGCAGAGCTTTTTTTAACTTCCAACTTCTGTTTTGTTTTCTTCTTTGAACTCCACTGTAGTGAAAGTTGTAGAATGTTTCAGTTGGAAGGGATAGTTGGAATATGGGTTCTACTGTCAATTTGGAGTGGTTTATGATTTATCTTGAACCTTCTTGTTCTTGATAATTTGGCTTACATAGATTTTTCTCTGCTACATTGCTGCTAGAAATTTAATTAATGTTTCGTTTAAAACTGTGTGTGACTATTTTTGTTGCGATGGCTGAAGTACATTGCTACTATTAGTCACGCCAAGGTTCAGTCTGTCCGCCAGTGTACGATAATCGTTTTTCTTGCTTATGTCTCACAACTATCTCCCAACATTTGTTCCTGCAATTGTGTAGTTGTGTAAGCTAACTGAAGAGTTCTGGCAAGCGCGCGCTTGGAGAACCGCTATCCCACTCCCATTTTGAATCTTAAAAAATAGTTAGCTAGTAGATATTGTCCTCTTTGGGTTTTCCCTTTCGAGCTTCCCTTCAAAGTTTTTAAAACGCGTTTGGTAGGGAGAAGTTTCCACACCCTTATAAAGAATGCTTTGTTCTCCTCCCCAACCAGTGTGGGATCTCACAATCCACCCCCCTTCAGGGGCCTAGTGTCTTCGTTGGCACTCGTTCCCTTCTCCAATCAATGTGGGACCTCCAATCCACCCCTCTTCGGGGCTCAGCCTCCTCGCTGGCACATCGTCCGATTTCTAGCTCTGATACCATTTGTAACAGTCTAAGCCCACCACTAGCAGATAATGTCCTCTTTGGGTTTTCCCTTTCGGGCTTCCTCTCAAGGTTTTTAAAACGTGTCTTCTAGGGAGAGGTTTCCACACTCTTATAAATAATGCTTCGTTCTCCTCCTCAACTGATATGGGATCTTCAACTATCATCATTTAAAAAAAAAAAAAAAAAACTAGTATTAAACTCATAGGTTGCTAACGGGCAATTAAATTCCTTGTCATCTGAGCGTTGGGAGGATGCGGTGTTTTCTCTGTATAGTTTTTATTTTTATCATTATTAATAAACAAATCAATTTGAACTATTGACTACTGTCTACTGATGCTGAATGTCCATTCTATTTCATGGCATTATCAGTAGATTTAAACAAATCTTTTGAATGTCCTCTCACATTTATATGGACTGATTCCTACTATTCCTTCTTTCCCCTTTGTTTTGTAGGGGTTGATTCTTGATCTAATAGAATTATTTTGCTGTATCTTGATCTAATAGAATTATTTTTGGTTTATCCAGACTAATATCAATCCAACCCATTTCATGAATAAAATGTGACCAAAACCAAGTGAATATACTTCAACTTTTAACTTGAACTGTTTTTCACATGCACTAGAATGGCATGAACTTAGTCTGATTAAACACTAACTTCTGCTGAACACCAGTATTTTTGGATTTTGTTTCTCATATGCCATTCTTCGGTGCATTATGATATATGCCATCCTTGCGTTTTGGGTTTTGTCTGGGTTTTGTCTTCTTTATCGTTTGAAACGTAATAATATTTACCATCCCTAAACCCTTGCATTTAGGGTTTTTCTTCTTTATTAATTAATAAAAAAATTATATATAGTGCACATTACAAAAGAAAGGTCTTGCTTTTTTATTTTTTTGCTCCTTGCACGACATAAGACTATTGTTCCTTGAGCTTTAAAAAACACTGATTACAACAGAATATGAATATCTTTTATTTGAATAACCATTGTAAAATGTTTGCGATACATTACCAATAGAATCTATAATAGATTATTTTTTCCTTAAGAAATCCATAGAAGCACAATTCCAAAAGATTTTAGCCTTAAATTTAAGCCATCAGGCTGTGAGGGCTTCCAAGAAAAATCGTCAACCAAGCTGGGTTGGCATAAACAGAAACCAGGCTCATTGAACATGAAAGACCACCTCCTATAGAAAAAGGTCAGTGGAGGTAATGGTAATTTTGGGTTTCATCATAGGAATAGCAAAGGAACAAACCAGGGAGAGAACCCAATTTTGAAACTTTTTTTGAGCCGCTTGGGGTGTTGAGGTTTCTTTAAGTAAGTGACCACACAATCAGATTAACCTTCCTGGGGACGTTAAACTTCCAAACTGATTTAACCAAAGGAGTTTTCAGCTTTAGCAAGGTCATAGAGAGTTTAATGAAAGCGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGTATCAATGTGTCCTATAAAGGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACTCCACAATTATCCCCCAATATTACCTATGGTTTTGGTTTAGGCTTCTTTGCCTATCTTTCTGGTTTAACCCCTTGTTGCCAACCATCACTCTTCTCCCTAAGCATTTAAGAATTAGGGCGTTATTTCTCTACTTCTGGAAAGAGCCAATGGAAGGGAAGTCCAACTCCCTTTTAATGGGTGACTCAGGAGTTGGTGAATATTGATTAGATTGCATTAAGAAGTAGGATGTTATTTTCTCTACTTCTGGGAAGAGCCAATTGAAGGAAAGTCCCAACTCCCTTTTATTGGGTGCTTCCACTTAGAGTCGTTTCTCACAAGATGCCTTTATGGGAGAGTTGGGACTCAATTTCATAATTTTAGTTGGTTACCTCTTTTGTGGGAGGATTTCAACTGAGATTATAAACAATGTTTTAAAAAGCTAAAGTCAGCCTTGAGACTTTTCCACCGGTGGAGGCGTGGTGAAAGCCTCAAGGTGGTATGAAGCATAAGACTAATTTAATTAAATTTTTTTTTACCAAGTATTGATAAACAAACTTAGTAATCATAAAAAGTTAAAAAAAAAAAAAACCTATGAAGCATGACACATATGTCCGGACATGCTTTGGCCATGCGATACATGGCTAGACACACCTCTAGATAATATTTAACCCATAAAATAGGGGAAATTTTGAGATTTTCTTATAGATTGAATCTTTAAATATTGATCAATCCTAAAGTATTAGGATGACATGTTCATCCTCTTGCAGCCAACTAATCTTTTTATATGTTTTAAGGTTTCAAATATTGTTAATTGACTTAACTATGGATGTTTTTAGTGAAGCATATTTTATTTTTATGTTTAATTCACATTTTGTCTATTAAAAAAACAGACTAATATACCTATATCGACACATATTTTATATAAAAAAACATGTCCCCAAGGTGCTTGTGTCCTACTTTTTAAGAATTTGATGTGTCTCAGTGTTTATGTCATTGTCTTGTATCTGTGCTTCTTAGATCATTCATGTCAATTGCACCTAAACATAAACTCTAAAGTGATATCATTAACGTCACTATTGTTATCATTAAGAGGAATCACTGTTTGGTTGATTTTGAGTGATTCTCGTGTTTCATAGGTGTGGACATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTTCTGCAAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGGCGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGACGTAGCCTTACTATGTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTTAATATCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCCAACTTTGATAGACGTAGTCATGCAGTTCTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAA

mRNA sequence

ATGGCCAAATCCATAGAAGCACAATTCCAAAAGATTTTAGCCTTAAATTTAAGCCATCAGGCTGTGAGGGCTTCCAAGAAAAATCGTCAACCAAGCTGGCAAGGTCATAGAGAGTTTAATGAAAGCGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACTCCACAATTATCCCCCAATATTACCTATGCTAAAGTCAGCCTTGAGACTTTTCCACCGGTGGAGGCGTGGTGAAAGCCTCAAGGTGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTTCTGCAAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGGCGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGCCTTACTATGTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTTAATATCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCCAACTTTGATAGACGTAGTCATGCAGTTCTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAA

Coding sequence (CDS)

ATGGCCAAATCCATAGAAGCACAATTCCAAAAGATTTTAGCCTTAAATTTAAGCCATCAGGCTGTGAGGGCTTCCAAGAAAAATCGTCAACCAAGCTGGCAAGGTCATAGAGAGTTTAATGAAAGCGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACTCCACAATTATCCCCCAATATTACCTATGCTAAAGTCAGCCTTGAGACTTTTCCACCGGTGGAGGCGTGGTGAAAGCCTCAAGGTGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTTCTGCAAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGGCGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGCCTTACTATGTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTTAATATCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCCAACTTTGATAGACGTAGTCATGCAGTTCTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAA

Protein sequence

MAKSIEAQFQKILALNLSHQAVRASKKNRQPSWQGHREFNESDLEEKQLNESMYSTSLGQLLIETLYNYQFLYEKSEQALHNYPPILPMLKSALRLFHRWRRGESLKVRHRGSSRRNQLQVRVVLVFMPILMVIFCKSTCVYRIIYYPLSNVLLMHFYTLLQLQGSLWDVDEDVGVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDALLCFFDAWGLLLIYTLNIITMIKLWHVSRLESRLLSSNFDRRSHAVLKLVTMKDYCVKSFL

Homology

[Close]

BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match: KAG6593429.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147 bits (370), Expect = 1.10e-39
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 135 FCKSTCVYRIIYYPLSNVLLMHFYTLLQLQGSLWDVDEDVGVGAVVVVDARFVAVVSSFE 194
           FC+STCVYRIIYYPLSNVLL HFYTLLQLQGSLWDVDEDV VGAVVVVDARFVAVVSSFE
Sbjct: 94  FCESTCVYRIIYYPLSNVLLKHFYTLLQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFE 153

Query: 195 TGSVNTCIVAKDSEFSDAL 213
           TGSVNTCIVAKDSEFSD +
Sbjct: 154 TGSVNTCIVAKDSEFSDGI 172

[Close]

BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match: KAG6571478.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.46e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 162 QLQGSLWDVDEDVGVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD 211
           QLQGSLWDVDEDV VGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD
Sbjct: 69  QLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD 118

[Close]

BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match: KAG6606428.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 7.51e-09
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 163 LQGSLWDVDEDVGVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD 211
           LQGSLW VDED  VG VVVVDARFVAV S+F+  SVNTCI+ K  EFSD
Sbjct: 70  LQGSLWGVDEDEAVGVVVVVDARFVAV-SNFDLRSVNTCILGKVCEFSD 117

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g00540.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g00540.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593429.1	1.10e-39	93.67	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6571478.1	1.46e-19	98.00	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6606428.1	7.51e-09	73.47	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Cp4.1LG15g00540.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g00540.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG15g00540	Cp4.1LG15g00540	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g00540.1:exon:001	Cp4.1LG15g00540.1:exon:001	exon
Cp4.1LG15g00540.1:exon:002	Cp4.1LG15g00540.1:exon:002	exon
Cp4.1LG15g00540.1:exon:003	Cp4.1LG15g00540.1:exon:003	exon
Cp4.1LG15g00540.1:exon:004	Cp4.1LG15g00540.1:exon:004	exon
Cp4.1LG15g00540.1:exon:005	Cp4.1LG15g00540.1:exon:005	exon
Cp4.1LG15g00540.1:exon:006	Cp4.1LG15g00540.1:exon:006	exon
Cp4.1LG15g00540.1:exon:007	Cp4.1LG15g00540.1:exon:007	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g00540.1:cds:001	Cp4.1LG15g00540.1:cds:001	CDS
Cp4.1LG15g00540.1:cds:002	Cp4.1LG15g00540.1:cds:002	CDS
Cp4.1LG15g00540.1:cds:003	Cp4.1LG15g00540.1:cds:003	CDS
Cp4.1LG15g00540.1:cds:004	Cp4.1LG15g00540.1:cds:004	CDS
Cp4.1LG15g00540.1:cds:005	Cp4.1LG15g00540.1:cds:005	CDS
Cp4.1LG15g00540.1:cds:006	Cp4.1LG15g00540.1:cds:006	CDS
Cp4.1LG15g00540.1:cds:007	Cp4.1LG15g00540.1:cds:007	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g00540.1	Cp4.1LG15g00540.1-protein	polypeptide