Cp4.1LG15g00540.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG15g00540.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG15: 285924 .. 290274 (-)
Sequence length822
RNA-Seq ExpressionCp4.1LG15g00540.1
SyntenyCp4.1LG15g00540.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTTTTTATGTTTAGAAACTTGGATTTTGGTGAATCTACAGGTTTTTGATGAAGCTGAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTATCCTTCTTACTTTCACTCACAACCACGCACATTGATATTTTCTTAATCTTGTTAAACCCTAGATTTACCAACTTTGTAGCAGAGCTTTTTTTAACTTCCAACTTCTGTTTTGTTTTCTTCTTTGAACTCCACTGTAGTGAAAGTTGTAGAATGTTTCAGTTGGAAGGGATAGTTGGAATATGGGTTCTACTGTCAATTTGGAGTGGTTTATGATTTATCTTGAACCTTCTTGTTCTTGATAATTTGGCTTACATAGATTTTTCTCTGCTACATTGCTGCTAGAAATTTAATTAATGTTTCGTTTAAAACTGTGTGTGACTATTTTTGTTGCGATGGCTGAAGTACATTGCTACTATTAGTCACGCCAAGGTTCAGTCTGTCCGCCAGTGTACGATAATCGTTTTTCTTGCTTATGTCTCACAACTATCTCCCAACATTTGTTCCTGCAATTGTGTAGTTGTGTAAGCTAACTGAAGAGTTCTGGCAAGCGCGCGCTTGGAGAACCGCTATCCCACTCCCATTTTGAATCTTAAAAAATAGTTAGCTAGTAGATATTGTCCTCTTTGGGTTTTCCCTTTCGAGCTTCCCTTCAAAGTTTTTAAAACGCGTTTGGTAGGGAGAAGTTTCCACACCCTTATAAAGAATGCTTTGTTCTCCTCCCCAACCAGTGTGGGATCTCACAATCCACCCCCCTTCAGGGGCCTAGTGTCTTCGTTGGCACTCGTTCCCTTCTCCAATCAATGTGGGACCTCCAATCCACCCCTCTTCGGGGCTCAGCCTCCTCGCTGGCACATCGTCCGATTTCTAGCTCTGATACCATTTGTAACAGTCTAAGCCCACCACTAGCAGATAATGTCCTCTTTGGGTTTTCCCTTTCGGGCTTCCTCTCAAGGTTTTTAAAACGTGTCTTCTAGGGAGAGGTTTCCACACTCTTATAAATAATGCTTCGTTCTCCTCCTCAACTGATATGGGATCTTCAACTATCATCATTTAAAAAAAAAAAAAAAAAACTAGTATTAAACTCATAGGTTGCTAACGGGCAATTAAATTCCTTGTCATCTGAGCGTTGGGAGGATGCGGTGTTTTCTCTGTATAGTTTTTATTTTTATCATTATTAATAAACAAATCAATTTGAACTATTGACTACTGTCTACTGATGCTGAATGTCCATTCTATTTCATGGCATTATCAGTAGATTTAAACAAATCTTTTGAATGTCCTCTCACATTTATATGGACTGATTCCTACTATTCCTTCTTTCCCCTTTGTTTTGTAGGGGTTGATTCTTGATCTAATAGAATTATTTTGCTGTATCTTGATCTAATAGAATTATTTTTGGTTTATCCAGACTAATATCAATCCAACCCATTTCATGAATAAAATGTGACCAAAACCAAGTGAATATACTTCAACTTTTAACTTGAACTGTTTTTCACATGCACTAGAATGGCATGAACTTAGTCTGATTAAACACTAACTTCTGCTGAACACCAGTATTTTTGGATTTTGTTTCTCATATGCCATTCTTCGGTGCATTATGATATATGCCATCCTTGCGTTTTGGGTTTTGTCTGGGTTTTGTCTTCTTTATCGTTTGAAACGTAATAATATTTACCATCCCTAAACCCTTGCATTTAGGGTTTTTCTTCTTTATTAATTAATAAAAAAATTATATATAGTGCACATTACAAAAGAAAGGTCTTGCTTTTTTATTTTTTTGCTCCTTGCACGACATAAGACTATTGTTCCTTGAGCTTTAAAAAACACTGATTACAACAGAATATGAATATCTTTTATTTGAATAACCATTGTAAAATGTTTGCGATACATTACCAATAGAATCTATAATAGATTATTTTTTCCTTAAGAAATCCATAGAAGCACAATTCCAAAAGATTTTAGCCTTAAATTTAAGCCATCAGGCTGTGAGGGCTTCCAAGAAAAATCGTCAACCAAGCTGGGTTGGCATAAACAGAAACCAGGCTCATTGAACATGAAAGACCACCTCCTATAGAAAAAGGTCAGTGGAGGTAATGGTAATTTTGGGTTTCATCATAGGAATAGCAAAGGAACAAACCAGGGAGAGAACCCAATTTTGAAACTTTTTTTGAGCCGCTTGGGGTGTTGAGGTTTCTTTAAGTAAGTGACCACACAATCAGATTAACCTTCCTGGGGACGTTAAACTTCCAAACTGATTTAACCAAAGGAGTTTTCAGCTTTAGCAAGGTCATAGAGAGTTTAATGAAAGCGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGTATCAATGTGTCCTATAAAGGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACTCCACAATTATCCCCCAATATTACCTATGGTTTTGGTTTAGGCTTCTTTGCCTATCTTTCTGGTTTAACCCCTTGTTGCCAACCATCACTCTTCTCCCTAAGCATTTAAGAATTAGGGCGTTATTTCTCTACTTCTGGAAAGAGCCAATGGAAGGGAAGTCCAACTCCCTTTTAATGGGTGACTCAGGAGTTGGTGAATATTGATTAGATTGCATTAAGAAGTAGGATGTTATTTTCTCTACTTCTGGGAAGAGCCAATTGAAGGAAAGTCCCAACTCCCTTTTATTGGGTGCTTCCACTTAGAGTCGTTTCTCACAAGATGCCTTTATGGGAGAGTTGGGACTCAATTTCATAATTTTAGTTGGTTACCTCTTTTGTGGGAGGATTTCAACTGAGATTATAAACAATGTTTTAAAAAGCTAAAGTCAGCCTTGAGACTTTTCCACCGGTGGAGGCGTGGTGAAAGCCTCAAGGTGGTATGAAGCATAAGACTAATTTAATTAAATTTTTTTTTACCAAGTATTGATAAACAAACTTAGTAATCATAAAAAGTTAAAAAAAAAAAAAACCTATGAAGCATGACACATATGTCCGGACATGCTTTGGCCATGCGATACATGGCTAGACACACCTCTAGATAATATTTAACCCATAAAATAGGGGAAATTTTGAGATTTTCTTATAGATTGAATCTTTAAATATTGATCAATCCTAAAGTATTAGGATGACATGTTCATCCTCTTGCAGCCAACTAATCTTTTTATATGTTTTAAGGTTTCAAATATTGTTAATTGACTTAACTATGGATGTTTTTAGTGAAGCATATTTTATTTTTATGTTTAATTCACATTTTGTCTATTAAAAAAACAGACTAATATACCTATATCGACACATATTTTATATAAAAAAACATGTCCCCAAGGTGCTTGTGTCCTACTTTTTAAGAATTTGATGTGTCTCAGTGTTTATGTCATTGTCTTGTATCTGTGCTTCTTAGATCATTCATGTCAATTGCACCTAAACATAAACTCTAAAGTGATATCATTAACGTCACTATTGTTATCATTAAGAGGAATCACTGTTTGGTTGATTTTGAGTGATTCTCGTGTTTCATAGGTGTGGACATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTTCTGCAAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGGCGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGACGTAGCCTTACTATGTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTTAATATCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCCAACTTTGATAGACGTAGTCATGCAGTTCTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAA

mRNA sequence

ATGGCCAAATCCATAGAAGCACAATTCCAAAAGATTTTAGCCTTAAATTTAAGCCATCAGGCTGTGAGGGCTTCCAAGAAAAATCGTCAACCAAGCTGGCAAGGTCATAGAGAGTTTAATGAAAGCGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACTCCACAATTATCCCCCAATATTACCTATGCTAAAGTCAGCCTTGAGACTTTTCCACCGGTGGAGGCGTGGTGAAAGCCTCAAGGTGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTTCTGCAAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGGCGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGCCTTACTATGTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTTAATATCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCCAACTTTGATAGACGTAGTCATGCAGTTCTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAA

Coding sequence (CDS)

ATGGCCAAATCCATAGAAGCACAATTCCAAAAGATTTTAGCCTTAAATTTAAGCCATCAGGCTGTGAGGGCTTCCAAGAAAAATCGTCAACCAAGCTGGCAAGGTCATAGAGAGTTTAATGAAAGCGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACTCCACAATTATCCCCCAATATTACCTATGCTAAAGTCAGCCTTGAGACTTTTCCACCGGTGGAGGCGTGGTGAAAGCCTCAAGGTGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTTCTGCAAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGGCGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGCCTTACTATGTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTTAATATCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCCAACTTTGATAGACGTAGTCATGCAGTTCTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAA

Protein sequence

MAKSIEAQFQKILALNLSHQAVRASKKNRQPSWQGHREFNESDLEEKQLNESMYSTSLGQLLIETLYNYQFLYEKSEQALHNYPPILPMLKSALRLFHRWRRGESLKVRHRGSSRRNQLQVRVVLVFMPILMVIFCKSTCVYRIIYYPLSNVLLMHFYTLLQLQGSLWDVDEDVGVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDALLCFFDAWGLLLIYTLNIITMIKLWHVSRLESRLLSSNFDRRSHAVLKLVTMKDYCVKSFL
Homology
[Close]
BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match: KAG6593429.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147 bits (370), Expect = 1.10e-39
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0 

Query: 135 FCKSTCVYRIIYYPLSNVLLMHFYTLLQLQGSLWDVDEDVGVGAVVVVDARFVAVVSSFE 194
           FC+STCVYRIIYYPLSNVLL HFYTLLQLQGSLWDVDEDV VGAVVVVDARFVAVVSSFE
Sbjct: 94  FCESTCVYRIIYYPLSNVLLKHFYTLLQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFE 153

Query: 195 TGSVNTCIVAKDSEFSDAL 213
           TGSVNTCIVAKDSEFSD +
Sbjct: 154 TGSVNTCIVAKDSEFSDGI 172

[Close]
BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match: KAG6571478.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.46e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 162 QLQGSLWDVDEDVGVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD 211
           QLQGSLWDVDEDV VGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD
Sbjct: 69  QLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD 118

[Close]
BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match: KAG6606428.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 7.51e-09
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 163 LQGSLWDVDEDVGVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSD 211
           LQGSLW VDED  VG VVVVDARFVAV S+F+  SVNTCI+ K  EFSD
Sbjct: 70  LQGSLWGVDEDEAVGVVVVVDARFVAV-SNFDLRSVNTCILGKVCEFSD 117

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g00540.1 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6593429.11.10e-3993.67Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so... [more]
KAG6571478.11.46e-1998.00Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so... [more]
KAG6606428.17.51e-0973.47Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so... [more]
BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g00540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG15g00540Cp4.1LG15g00540gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG15g00540.1:exon:001Cp4.1LG15g00540.1:exon:001exon
Cp4.1LG15g00540.1:exon:002Cp4.1LG15g00540.1:exon:002exon
Cp4.1LG15g00540.1:exon:003Cp4.1LG15g00540.1:exon:003exon
Cp4.1LG15g00540.1:exon:004Cp4.1LG15g00540.1:exon:004exon
Cp4.1LG15g00540.1:exon:005Cp4.1LG15g00540.1:exon:005exon
Cp4.1LG15g00540.1:exon:006Cp4.1LG15g00540.1:exon:006exon
Cp4.1LG15g00540.1:exon:007Cp4.1LG15g00540.1:exon:007exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG15g00540.1:cds:001Cp4.1LG15g00540.1:cds:001CDS
Cp4.1LG15g00540.1:cds:002Cp4.1LG15g00540.1:cds:002CDS
Cp4.1LG15g00540.1:cds:003Cp4.1LG15g00540.1:cds:003CDS
Cp4.1LG15g00540.1:cds:004Cp4.1LG15g00540.1:cds:004CDS
Cp4.1LG15g00540.1:cds:005Cp4.1LG15g00540.1:cds:005CDS
Cp4.1LG15g00540.1:cds:006Cp4.1LG15g00540.1:cds:006CDS
Cp4.1LG15g00540.1:cds:007Cp4.1LG15g00540.1:cds:007CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG15g00540.1Cp4.1LG15g00540.1-proteinpolypeptide