CmoCh06G008160.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G008160.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ethylene-responsive transcription factor ERF038-like
Location	Cmo_Chr06: 4423340 .. 4423957 (-)
Sequence length	618
RNA-Seq Expression	CmoCh06G008160.1
Synteny	CmoCh06G008160.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATCCTCTTCAGAGATTCCAGTTTCAGTCGTCGTCGTCGGACATGAAAGAAAAGAACTCGAAGAAGATGAAGCTCGGGAACGACGGCAAGCATCCGACATATCGCGGCGTCCGAATGCGGCAATGGGGAAAATGGGTATCAGAAATCAGAGAACCCAAGAAGAAATCCAGAATTTGGTTGGGTACATTTTCCACTCCAGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACCATCAAAGGTCACTCCGCTTACCTCAACTTCCCGGAGTTGGCTCACCGCTTCCCTCGTCCCGCTAGCTCCTCCGCTAAGGACATTCGAGCCGCCGCCGCCAAAGCCGCGACGTTTCCTATTAATTCCACTGATGAAGACGACGACGATGCCGCCTCTCAATCCGACCGCAACCGCTCTCCCTCCTCTGTCGCCGCCGCCGCGAAATCTCCTGGCGAAATCGATGATCCGTTCTTCGATCTTCCCGATCTGTTTCTTCATCCCAATCACCAAATTGGTACATTCTGTTTCTCTCAAATGCTTCCGATTGACGGCTTCGACTCTGCTTTCGGCCGCCCGCCGTCGCCGTCGGAATATTTCGCCGCCACTCCTCCTTGA

mRNA sequence

ATGGAAGATCCTCTTCAGAGATTCCAGTTTCAGTCGTCGTCGTCGGACATGAAAGAAAAGAACTCGAAGAAGATGAAGCTCGGGAACGACGGCAAGCATCCGACATATCGCGGCGTCCGAATGCGGCAATGGGGAAAATGGGTATCAGAAATCAGAGAACCCAAGAAGAAATCCAGAATTTGGTTGGGTACATTTTCCACTCCAGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACCATCAAAGGTCACTCCGCTTACCTCAACTTCCCGGAGTTGGCTCACCGCTTCCCTCGTCCCGCTAGCTCCTCCGCTAAGGACATTCGAGCCGCCGCCGCCAAAGCCGCGACGTTTCCTATTAATTCCACTGATGAAGACGACGACGATGCCGCCTCTCAATCCGACCGCAACCGCTCTCCCTCCTCTGTCGCCGCCGCCGCGAAATCTCCTGGCGAAATCGATGATCCGTTCTTCGATCTTCCCGATCTGTTTCTTCATCCCAATCACCAAATTGGTACATTCTGTTTCTCTCAAATGCTTCCGATTGACGGCTTCGACTCTGCTTTCGGCCGCCCGCCGTCGCCGTCGGAATATTTCGCCGCCACTCCTCCTTGA

Coding sequence (CDS)

ATGGAAGATCCTCTTCAGAGATTCCAGTTTCAGTCGTCGTCGTCGGACATGAAAGAAAAGAACTCGAAGAAGATGAAGCTCGGGAACGACGGCAAGCATCCGACATATCGCGGCGTCCGAATGCGGCAATGGGGAAAATGGGTATCAGAAATCAGAGAACCCAAGAAGAAATCCAGAATTTGGTTGGGTACATTTTCCACTCCAGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACCATCAAAGGTCACTCCGCTTACCTCAACTTCCCGGAGTTGGCTCACCGCTTCCCTCGTCCCGCTAGCTCCTCCGCTAAGGACATTCGAGCCGCCGCCGCCAAAGCCGCGACGTTTCCTATTAATTCCACTGATGAAGACGACGACGATGCCGCCTCTCAATCCGACCGCAACCGCTCTCCCTCCTCTGTCGCCGCCGCCGCGAAATCTCCTGGCGAAATCGATGATCCGTTCTTCGATCTTCCCGATCTGTTTCTTCATCCCAATCACCAAATTGGTACATTCTGTTTCTCTCAAATGCTTCCGATTGACGGCTTCGACTCTGCTTTCGGCCGCCCGCCGTCGCCGTCGGAATATTTCGCCGCCACTCCTCCTTGA

Protein sequence

MEDPLQRFQFQSSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATFPINSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPNHQIGTFCFSQMLPIDGFDSAFGRPPSPSEYFAATPP

Homology

[Close]

BLAST of CmoCh06G008160.1 vs. ExPASy Swiss-Prot
Match: Q9ZQP3 (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana OX=3702 GN=ERF038 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.9e-39
Identity = 101/184 (54.89%), Postives = 114/184 (61.96%), Query Frame = 0


Query: 3   DPLQRFQ---FQSSSSDMKEKNSKKMKLGND-----GKHPTYRGVRMRQWGKWVSEIREP 62
           D  +RFQ    Q++   +K K  KK    +D      KHP +RGVRMRQWGKWVSEIREP
Sbjct: 4   DDCRRFQDSPAQTTERRVKYKPKKKRAKDDDDEKVVSKHPNFRGVRMRQWGKWVSEIREP 63

Query: 63  KKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAA 122
           KKKSRIWLGTFST EMAARAHDVAA  IKG SA+LNFPELA+  PRPAS+  KDI+AAAA
Sbjct: 64  KKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQAAAA 123

Query: 123 KAATFPINSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEI---DDPFFDLPDLFLHPNHQ 176
            AA       D +          + SPS       SP  I   DD F DLPDL L+ NH 
Sbjct: 124 AAAAAVAIDMDVETS--------SPSPSPTVTETSSPAMIALSDDAFSDLPDLLLNVNHN 179

[Close]

BLAST of CmoCh06G008160.1 vs. ExPASy Swiss-Prot
Match: Q9SUK8 (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana OX=3702 GN=ERF039 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.9e-36
Identity = 90/173 (52.02%), Postives = 105/173 (60.69%), Query Frame = 0


Query: 1   MEDPLQRFQFQSSSSDMKEKNSKKMKLGND----GKHPTYRGVRMRQWGKWVSEIREPKK 60
           M+D       ++  S + EK  K  K  N+     K P +RGVRMRQWGKWVSEIREP+K
Sbjct: 1   MQDSSSHESQRNLRSPVPEKTGKSSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRK 60

Query: 61  KSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKA 120
           KSRIWLGTFSTPEMAARAHDVAA  IKG SA+LNFPELA+  PRPAS+  KDI+ AAA A
Sbjct: 61  KSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAA 120

Query: 121 ATFPINSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPN 170
           A                     ++P S ++   S    DD F DLPDL L  N
Sbjct: 121 AAVDW-----------------KAPESPSSTVTSSPVADDAFSDLPDLLLDVN 156

[Close]

BLAST of CmoCh06G008160.1 vs. ExPASy Swiss-Prot
Match: Q9LYD3 (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.4e-33
Identity = 87/156 (55.77%), Postives = 100/156 (64.10%), Query Frame = 0


Query: 13  SSSDMKEKNSKKMKLGND-GKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMA 72
           S     E++ KK K G D GKHP YRGVRMR WGKWVSEIREP+KKSRIWLGTF TPEMA
Sbjct: 27  SDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMA 86

Query: 73  ARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATF-PINSTDEDDDD 132
           ARAHDVAA +IKG +A LNFPELA  FPRP S S +DI+ AA KAA   P  S       
Sbjct: 87  ARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTSFSSSTSS 146

Query: 133 AASQSDRNRSPSSVAAAAKSPGEIDD--PFFDLPDL 165
           ++S S  +   S V     S  E ++     +LP L
Sbjct: 147 SSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSL 182

[Close]

BLAST of CmoCh06G008160.1 vs. ExPASy Swiss-Prot
Match: Q8LBQ7 (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana OX=3702 GN=ERF034 PE=2 SV=2)

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-32
Identity = 85/206 (41.26%), Postives = 108/206 (52.43%), Query Frame = 0


Query: 16  DMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAH 75
           D      K+ K     KHPTYRGVRMR WGKWVSEIREP+KKSRIWLGT+ T EMAARAH
Sbjct: 80  DQNGGGGKRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAH 139

Query: 76  DVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAA---------------------- 135
           DVAA  IKG +AYLNFP+LA   PRP ++S KDI+AAA                      
Sbjct: 140 DVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAAVNWQDSVNDVSNSEVAEI 199

Query: 136 -----AKAATFPINSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHP 191
                ++A    + S+D          + + +  +  +A       ++  FDLPDLF   
Sbjct: 200 VEAEPSRAVVAQLFSSDTSTTTTTQSQEYSEASCASTSACTDKDSEEEKLFDLPDLFTDE 259

[Close]

BLAST of CmoCh06G008160.1 vs. ExPASy Swiss-Prot
Match: Q39127 (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.8e-32
Identity = 81/160 (50.62%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 10  FQSSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPE 69
           +++S+   + +  KK  + + GKHP YRGVR R WGKWVSEIREP+KKSRIWLGTF +PE
Sbjct: 10  WEASAVRQENEEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPE 69

Query: 70  MAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATFPINSTDEDDD 129
           MAARAHDVAA +IKG SA LNFP+LA  FPRP+S S +DI+ AA KAA    + +     
Sbjct: 70  MAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSS 129

Query: 130 DAASQSDRNRSP-----SSVAAAAKSPGEIDDPFFDLPDL 165
                S ++ S      SS A  ++  GEI     +LP L
Sbjct: 130 SLTFSSSQSSSSLESLVSSSATGSEELGEI----VELPSL 165

[Close]

BLAST of CmoCh06G008160.1 vs. ExPASy TrEMBL
Match: A0A6J1FZQ3 (ethylene-responsive transcription factor ERF038-like OS=Cucurbita moschata OX=3662 GN=LOC111449391 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 2.9e-111
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MEDPLQRFQFQSSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRI 60
           MEDPLQRFQFQSSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRI
Sbjct: 1   MEDPLQRFQFQSSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRI 60

Query: 61  WLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATFP 120
           WLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATFP
Sbjct: 61  WLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATFP 120

Query: 121 INSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPNHQIGTFCFSQM 180
           INSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPNHQIGTFCFSQM
Sbjct: 121 INSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPNHQIGTFCFSQM 180

Query: 181 LPIDGFDSAFGRPPSPSEYFAATPP 206
           LPIDGFDSAFGRPPSPSEYFAATPP
Sbjct: 181 LPIDGFDSAFGRPPSPSEYFAATPP 205

[Close]

BLAST of CmoCh06G008160.1 vs. ExPASy TrEMBL
Match: A0A6J1L2H3 (ethylene-responsive transcription factor ERF038-like OS=Cucurbita maxima OX=3661 GN=LOC111498502 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.2e-108
Identity = 204/208 (98.08%), Postives = 205/208 (98.56%), Query Frame = 0


Query: 1   MEDPLQRFQFQ-SSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSR 60
           MEDPLQRFQFQ SSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSR
Sbjct: 1   MEDPLQRFQFQSSSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSR 60

Query: 61  IWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATF 120
           IWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATF
Sbjct: 61  IWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATF 120

Query: 121 PINSTDE--DDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPNHQIGTFCF 180
           PINSTDE  DDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPNHQIGTFCF
Sbjct: 121 PINSTDEDDDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPNHQIGTFCF 180

Query: 181 SQMLPIDGFDSAFGRPPSPSEYFAATPP 206
           SQMLPIDGFDSAFGRPPSPSEYF+ATPP
Sbjct: 181 SQMLPIDGFDSAFGRPPSPSEYFSATPP 208

[Close]

BLAST of CmoCh06G008160.1 vs. ExPASy TrEMBL
Match: A0A6J1E6G7 (ethylene-responsive transcription factor ERF039-like OS=Cucurbita moschata OX=3662 GN=LOC111431149 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.3e-76
Identity = 162/214 (75.70%), Postives = 171/214 (79.91%), Query Frame = 0


Query: 1   MEDPLQRFQFQSSSSD---------MKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEI 60
           MEDPL R Q  SSSS          +KEK SKK+KLGNDGKHPTYRGVRMRQWGKWVSEI
Sbjct: 1   MEDPLHRLQSSSSSSSSSSSDIKNGVKEKISKKVKLGNDGKHPTYRGVRMRQWGKWVSEI 60

Query: 61  REPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRA 120
           REPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAH  PRPA+SS  DIRA
Sbjct: 61  REPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHCLPRPATSSPNDIRA 120

Query: 121 AAAKAATFPINSTDEDDDDAASQSD--RNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPN 180
           AAAKAA+F   + D     AA+QSD   NRS SS + AAKSPGEIDDPFFDLPDLFL PN
Sbjct: 121 AAAKAASF--TTDDHHHIIAAAQSDLNHNRSTSSSSVAAKSPGEIDDPFFDLPDLFLDPN 180

Query: 181 HQIGTFCFSQMLPIDGFDSAFGRPPS--PSEYFA 202
           HQIGTFC+SQ LPI+ FDS    PPS  PSEYFA
Sbjct: 181 HQIGTFCYSQFLPIESFDSVLAPPPSPPPSEYFA 212

[Close]

BLAST of CmoCh06G008160.1 vs. ExPASy TrEMBL
Match: A0A6J1HN35 (ethylene-responsive transcription factor ERF039-like OS=Cucurbita maxima OX=3661 GN=LOC111465108 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.4e-75
Identity = 162/225 (72.00%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 1   MEDPLQRFQFQSSSSD-----------MKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVS 60
           MEDPL R Q  SSSS            +KEK SKK+KLGNDGKHPTYRGVRMRQWGKWVS
Sbjct: 1   MEDPLHRVQSSSSSSSSSSSSSDIKNGVKEKISKKVKLGNDGKHPTYRGVRMRQWGKWVS 60

Query: 61  EIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDI 120
           EIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAH  PRPA+SS  DI
Sbjct: 61  EIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHCLPRPATSSPNDI 120

Query: 121 RAAAAKAATFPINSTDEDDDDAASQSDRNR-----------SPSSVAAAAKSPGEIDDPF 180
           RAAAAKAA+F I   D+    AA+QSD N            S SS + AAKSPGEIDDPF
Sbjct: 121 RAAAAKAASFTI---DDHHHIAAAQSDLNHNRSTSSSSSSSSSSSSSVAAKSPGEIDDPF 180

Query: 181 FDLPDLFLHPNHQIGTFCFSQMLPIDGFDSAFGRPPS--PSEYFA 202
           FDLPDLFL PNHQIGTFC+SQ LPI+ FDS    PPS  PSEYFA
Sbjct: 181 FDLPDLFLDPNHQIGTFCYSQFLPIESFDSVLAPPPSPPPSEYFA 222

[Close]

BLAST of CmoCh06G008160.1 vs. ExPASy TrEMBL
Match: A0A5A7TD44 (Ethylene-responsive transcription factor ERF039 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold477G00450 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 3.2e-73
Identity = 158/212 (74.53%), Postives = 168/212 (79.25%), Query Frame = 0


Query: 1   MEDPLQRFQFQSSSSD--------MKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIR 60
           MEDPLQRFQF S SS         +KEK SKK+KLG+DGKHPTYRGVRMRQWGKWVSEIR
Sbjct: 1   MEDPLQRFQFHSQSSSSSSDIKNCIKEKTSKKVKLGSDGKHPTYRGVRMRQWGKWVSEIR 60

Query: 61  EPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAA 120
           EPKKKSRIWLGTFSTPEMAARAHDVAA+TIKGHSAYLNFPELAHR PRPASSS KDIRAA
Sbjct: 61  EPKKKSRIWLGTFSTPEMAARAHDVAAKTIKGHSAYLNFPELAHRLPRPASSSPKDIRAA 120

Query: 121 AAKAATFPINSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFL-HPNHQ 180
           AAKAA F     DE +  A S+ + N   SS A A KS GEIDD FFDLPDLF+  PNHQ
Sbjct: 121 AAKAALF----NDEQNPGAKSELNLNCCGSS-AVAVKSGGEIDDTFFDLPDLFIDDPNHQ 180

Query: 181 IGTFCFSQMLPIDGFDSAFGR---PPSPSEYF 201
           I TFCFSQ +PIDGFDS F R   P SPS+YF
Sbjct: 181 IDTFCFSQFVPIDGFDSVFTRPLSPSSPSDYF 207

[Close]

BLAST of CmoCh06G008160.1 vs. TAIR 10
Match: AT2G35700.1 (ERF family protein 38 )

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-40
Identity = 101/184 (54.89%), Postives = 114/184 (61.96%), Query Frame = 0


Query: 3   DPLQRFQ---FQSSSSDMKEKNSKKMKLGND-----GKHPTYRGVRMRQWGKWVSEIREP 62
           D  +RFQ    Q++   +K K  KK    +D      KHP +RGVRMRQWGKWVSEIREP
Sbjct: 4   DDCRRFQDSPAQTTERRVKYKPKKKRAKDDDDEKVVSKHPNFRGVRMRQWGKWVSEIREP 63

Query: 63  KKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAA 122
           KKKSRIWLGTFST EMAARAHDVAA  IKG SA+LNFPELA+  PRPAS+  KDI+AAAA
Sbjct: 64  KKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQAAAA 123

Query: 123 KAATFPINSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEI---DDPFFDLPDLFLHPNHQ 176
            AA       D +          + SPS       SP  I   DD F DLPDL L+ NH 
Sbjct: 124 AAAAAVAIDMDVETS--------SPSPSPTVTETSSPAMIALSDDAFSDLPDLLLNVNHN 179

[Close]

BLAST of CmoCh06G008160.1 vs. TAIR 10
Match: AT4G16750.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-37
Identity = 90/173 (52.02%), Postives = 105/173 (60.69%), Query Frame = 0


Query: 1   MEDPLQRFQFQSSSSDMKEKNSKKMKLGND----GKHPTYRGVRMRQWGKWVSEIREPKK 60
           M+D       ++  S + EK  K  K  N+     K P +RGVRMRQWGKWVSEIREP+K
Sbjct: 1   MQDSSSHESQRNLRSPVPEKTGKSSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRK 60

Query: 61  KSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKA 120
           KSRIWLGTFSTPEMAARAHDVAA  IKG SA+LNFPELA+  PRPAS+  KDI+ AAA A
Sbjct: 61  KSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAA 120

Query: 121 ATFPINSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPN 170
           A                     ++P S ++   S    DD F DLPDL L  N
Sbjct: 121 AAVDW-----------------KAPESPSSTVTSSPVADDAFSDLPDLLLDVN 156

[Close]

BLAST of CmoCh06G008160.1 vs. TAIR 10
Match: AT5G11590.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-34
Identity = 87/156 (55.77%), Postives = 100/156 (64.10%), Query Frame = 0


Query: 13  SSSDMKEKNSKKMKLGND-GKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMA 72
           S     E++ KK K G D GKHP YRGVRMR WGKWVSEIREP+KKSRIWLGTF TPEMA
Sbjct: 27  SDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMA 86

Query: 73  ARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATF-PINSTDEDDDD 132
           ARAHDVAA +IKG +A LNFPELA  FPRP S S +DI+ AA KAA   P  S       
Sbjct: 87  ARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTSFSSSTSS 146

Query: 133 AASQSDRNRSPSSVAAAAKSPGEIDD--PFFDLPDL 165
           ++S S  +   S V     S  E ++     +LP L
Sbjct: 147 SSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSL 182

[Close]

BLAST of CmoCh06G008160.1 vs. TAIR 10
Match: AT2G44940.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-33
Identity = 85/206 (41.26%), Postives = 108/206 (52.43%), Query Frame = 0


Query: 16  DMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAH 75
           D      K+ K     KHPTYRGVRMR WGKWVSEIREP+KKSRIWLGT+ T EMAARAH
Sbjct: 80  DQNGGGGKRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAH 139

Query: 76  DVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAA---------------------- 135
           DVAA  IKG +AYLNFP+LA   PRP ++S KDI+AAA                      
Sbjct: 140 DVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAAVNWQDSVNDVSNSEVAEI 199

Query: 136 -----AKAATFPINSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHP 191
                ++A    + S+D          + + +  +  +A       ++  FDLPDLF   
Sbjct: 200 VEAEPSRAVVAQLFSSDTSTTTTTQSQEYSEASCASTSACTDKDSEEEKLFDLPDLFTDE 259

[Close]

BLAST of CmoCh06G008160.1 vs. TAIR 10
Match: AT5G25810.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-33
Identity = 81/160 (50.62%), Postives = 103/160 (64.38%), Query Frame = 0


Query: 10  FQSSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPE 69
           +++S+   + +  KK  + + GKHP YRGVR R WGKWVSEIREP+KKSRIWLGTF +PE
Sbjct: 10  WEASAVRQENEEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPE 69

Query: 70  MAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATFPINSTDEDDD 129
           MAARAHDVAA +IKG SA LNFP+LA  FPRP+S S +DI+ AA KAA    + +     
Sbjct: 70  MAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSS 129

Query: 130 DAASQSDRNRSP-----SSVAAAAKSPGEIDDPFFDLPDL 165
                S ++ S      SS A  ++  GEI     +LP L
Sbjct: 130 SLTFSSSQSSSSLESLVSSSATGSEELGEI----VELPSL 165

The following BLAST results are available for this feature:

BLAST of CmoCh06G008160.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZQP3	2.9e-39	54.89	Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SUK8	3.9e-36	52.02	Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LYD3	2.4e-33	55.77	Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q8LBQ7	2.6e-32	41.26	Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q39127	5.8e-32	50.63	Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmoCh06G008160.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZQ3	2.9e-111	100.00	ethylene-responsive transcription factor ERF038-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1L2H3	5.2e-108	98.08	ethylene-responsive transcription factor ERF038-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1E6G7	2.3e-76	75.70	ethylene-responsive transcription factor ERF039-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1HN35	3.4e-75	72.00	ethylene-responsive transcription factor ERF039-like OS=Cucurbita maxima OX=3661...	[more]
A0A5A7TD44	3.2e-73	74.53	Ethylene-responsive transcription factor ERF039 OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of CmoCh06G008160.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35700.1	2.0e-40	54.89	ERF family protein 38	[more]
AT4G16750.1	2.8e-37	52.02	Integrase-type DNA-binding superfamily protein	[more]
AT5G11590.1	1.7e-34	55.77	Integrase-type DNA-binding superfamily protein	[more]
AT2G44940.1	1.9e-33	41.26	Integrase-type DNA-binding superfamily protein	[more]
AT5G25810.1	4.1e-33	50.63	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 58..74 score: 66.2 coord: 36..47 score: 70.15
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 35..98 e-value: 6.3E-36 score: 135.4
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 35..85 e-value: 4.2E-13 score: 49.3
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 35..92 score: 22.484093
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 36..94 e-value: 2.44415E-32 score: 109.669
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 35..93 e-value: 1.9E-24 score: 87.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..37
None	No IPR available	PANTHER	PTHR31985	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	coord: 16..176
None	No IPR available	PANTHER	PTHR31985:SF130	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043	coord: 16..176
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 35..93

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G008160	CmoCh06G008160	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G008160.1:exon:4577	CmoCh06G008160.1:exon:4577	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G008160.1:cds	CmoCh06G008160.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G008160.1	CmoCh06G008160.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity