CmoCh01G012780.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G012780.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionmediator-associated protein 2-like
LocationCmo_Chr01: 10211883 .. 10214025 (+)
Sequence length977
RNA-Seq ExpressionCmoCh01G012780.1
SyntenyCmoCh01G012780.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTAAAAGATCAGCGTTAGTTTGGTTTTCTTGTGGGAACTAAGCTTGTATTGCTGAATTATTTTGTTTTCCTTTTTGTTTTTTTGTTGGTTTCACCGGAACAATGCAGCATAAAAAACATACGATTGAATGAAGTAGTTGCATGTGAATTGTTCGATGAAATGCCCAAATGGAGTTTTCGATTGGTTATGTCTATTTGCATTTATCTTCTGTTCTGTTATTTGATATTAGACTGTTGTTTTGCTATTTGTTGGTGTAGAGGCTTAATAGCTGTGAGCATGAGAAACGAGGTTGGTGCTGTTAAAAGTGTAGAAGGCTATAAACCCCCACCAGAGTTCGAGGAAGACGACAGGGAATTTCTTACTGATATTTCTTTGTCGGACTCTGTAGAGCTTTGGCTTATTCAATGGCCTGCTAACCAAGTAAGATCACATAAACTAATTTAGGAAAATAGGATAGCTACCTTCAATTTGGGAGAAATTAAAATGAACAGCCATAAATGTACATTCTTTCAAGATTGAAGTTTGTTGCAGCCATTGCAAATACTGTTTTACTCGGATTTATTCTTTTCTTTATTGGGTACTGTAGGCTCCGGATTTTGATGGCCAAGAGTTTTCTCTCCAACATCGTCCTGATGGACATTTGGGCAGCTTTCAGGGTTCATCTGGTAATTATCATTTTATCACTGATTTACTATGCTACAATCTTGTCATAACAACAAATTTCCTTTACTCTTTGAATTAATCTAGTATCAGTTTCTTTTTTAAAGCTGTTGGTGCTTAAATCCGCTTGAAGTATGTTTATTTGAATGTGATTTACATCTATTCTGTTCTTTTTTTTTTTTACAATGAGTTCAATTTATTCGCTGTTTCCATCAAAAGGAAAATCATATGATGTGGTCAGCTGTGTGGCTCAAGAACCTGAGGCTTCTGTCTTTCTACCATCTTCATCAGACACCAGATTAGGTAAATGCCCCATCTTTGTTTTGAATTTGTTTTACGTCACATGTCAGTAGCATCAGTCTCTATCTCTCTTTTTCTTAGTGTTAAACTTGGCTGCACTCATTCTGCACCAGTCCTGCTCTCATCTAGATTACGAGATGGTAGTTTCATCTTTAATACTAATGGTGTTAATACCTGGACTTCTATCTTTTCCTTTGTCCCCAGTGAACCCCATTTCGTATGTTTTTCACATGCCGCTATGTGCCGATTAGTGCGGTCTAGAACTTTTAATCTACTCCTTCCATTGTCAACGAGGTCGATGCTGGTTCTTCTACTACAAGTCTTAACATTATACTAGACAGCTATAATATGCTAACACTTCATTCCACGTTCTGTCATGTCTAAAACGTTGAACACAAACGATCAATGTTGGTACTTTGTGCATCTTAATTTGAGTCCAACGTCTCCTGACGTTTGTTCAAATCATGTCATATTCTAGTGGCATAATGTCTAAACTTCTTCTGTGTTTTGATTTGTCCTTTTACTCTTGAAGTTGGAAAGATTGCCCGGCGGATATCTCTCGTGCATTACCCAGAACCTGAAGAACTCGAAAAGGCCACCCCTATGAAATCAGTATATAAAAAATCTTCTGGAATGTCACTGACCACTTCATCTCGTCCAACTACAACATCACGAGGCCCACACTCGAGCAGTAGAAGAACAAGCTCTACACGAAGTAGTAAGCCAAGAAGTTCAATATCTGAATGTGGGGAACCATCAAAGCCTTCAAGTATTAAACAGGAACCAGAACCCTCCGAGTCCAGAGATTATCTGAAAAAGGATTCATCGAAAAGAAAACGTTCACAAGCCTAGTCGATCGACCGACTAACCACTCAATACAAGATTGAGGGATGTGATCATTGTGCAGCAACTTTTTCAGGGCCCTCCCGGCTATCTAGTGAAAGTAAAACAAAAAAGGCAAAAGAAATGAATGAGGTTCCTGCAAACTGTATTCATTAGTTTTTGACTGGTTACTAAAGTATGTCTGTACTCTTATTTCCCATTTGTCTTTCCTTGGATTAATTTTGGAGCAGTTTTTACGTCATGGGAAGTTGTCTCTTTGATCTGTCATACTAGTTATAGAAAATTCTTCATTAATATATTATTTATTAATTCATCTGCATTGTGACATTAGTAGT

mRNA sequence

ATGAGAGGCTTAATAGCTGTGAGCATGAGAAACGAGGTTGGTGCTGTTAAAAGTGTAGAAGGCTATAAACCCCCACCAGAGTTCGAGGAAGACGACAGGGAATTTCTTACTGATATTTCTTTGTCGGACTCTGTAGAGCTTTGGCTTATTCAATGGCCTGCTAACCAAGCTCCGGATTTTGATGGCCAAGAGTTTTCTCTCCAACATCGTCCTGATGGACATTTGGGCAGCTTTCAGGGTTCATCTGGAAAATCATATGATGTGGTCAGCTGTGTGGCTCAAGAACCTGAGGCTTCTGTCTTTCTACCATCTTCATCAGACACCAGATTAGTTGGAAAGATTGCCCGGCGGATATCTCTCGTGCATTACCCAGAACCTGAAGAACTCGAAAAGGCCACCCCTATGAAATCAGTATATAAAAAATCTTCTGGAATGTCACTGACCACTTCATCTCGTCCAACTACAACATCACGAGGCCCACACTCGAGCAGTAGAAGAACAAGCTCTACACGAAGTAGTAAGCCAAGAAGTTCAATATCTGAATGTGGGGAACCATCAAAGCCTTCAAGTATTAAACAGGAACCAGAACCCTCCGAGTCCAGAGATTATCTGAAAAAGGATTCATCGAAAAGAAAACGTTCACAAGCCTAGTCGATCGACCGACTAACCACTCAATACAAGATTGAGGGATGTGATCATTGTGCAGCAACTTTTTCAGGGCCCTCCCGGCTATCTAGTGAAAGTAAAACAAAAAAGGCAAAAGAAATGAATGAGGTTCCTGCAAACTGTATTCATTAGTTTTTGACTGGTTACTAAAGTATGTCTGTACTCTTATTTCCCATTTGTCTTTCCTTGGATTAATTTTGGAGCAGTTTTTACGTCATGGGAAGTTGTCTCTTTGATCTGTCATACTAGTTATAGAAAATTCTTCATTAATATATTATTTATTAATTCATCTGCATTGTGACATTAGTAGT

Coding sequence (CDS)

ATGAGAGGCTTAATAGCTGTGAGCATGAGAAACGAGGTTGGTGCTGTTAAAAGTGTAGAAGGCTATAAACCCCCACCAGAGTTCGAGGAAGACGACAGGGAATTTCTTACTGATATTTCTTTGTCGGACTCTGTAGAGCTTTGGCTTATTCAATGGCCTGCTAACCAAGCTCCGGATTTTGATGGCCAAGAGTTTTCTCTCCAACATCGTCCTGATGGACATTTGGGCAGCTTTCAGGGTTCATCTGGAAAATCATATGATGTGGTCAGCTGTGTGGCTCAAGAACCTGAGGCTTCTGTCTTTCTACCATCTTCATCAGACACCAGATTAGTTGGAAAGATTGCCCGGCGGATATCTCTCGTGCATTACCCAGAACCTGAAGAACTCGAAAAGGCCACCCCTATGAAATCAGTATATAAAAAATCTTCTGGAATGTCACTGACCACTTCATCTCGTCCAACTACAACATCACGAGGCCCACACTCGAGCAGTAGAAGAACAAGCTCTACACGAAGTAGTAAGCCAAGAAGTTCAATATCTGAATGTGGGGAACCATCAAAGCCTTCAAGTATTAAACAGGAACCAGAACCCTCCGAGTCCAGAGATTATCTGAAAAAGGATTCATCGAAAAGAAAACGTTCACAAGCCTAG

Protein sequence

MRGLIAVSMRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQHRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEELEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKPSSIKQEPEPSESRDYLKKDSSKRKRSQA
Homology
[Close]
BLAST of CmoCh01G012780.1 vs. ExPASy Swiss-Prot
Match: F4KF27 (Mediator-associated protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g64680 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 66/202 (32.67%), Postives = 96/202 (47.52%), Query Frame = 0 

Query: 22  YKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQHRPDGHLGSFQGS 81
           +K   +F     E L D  L+ S E WLIQ P  Q P+ +     ++   DG  G F+ S
Sbjct: 5   FKVSGDFIVSGAEQLDDTDLTRSDEFWLIQAPLGQFPEIEENTLKIEPDKDGLFGEFKDS 64

Query: 82  S--------GKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEELEKAT 141
           +        G  YD+ S  +Q+  A + +P S ++ +VGKI RR++LV YPEP EL    
Sbjct: 65  NAGSLHLCLGAKYDLASFHSQDAGAELIIP-SEESMIVGKITRRVALVRYPEPNEL--LQ 124

Query: 142 PMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGE-PSKPSSIK 201
            MK+  ++    S+T SS+ ++       SSR  S TRSS+ +S  S   E P  P    
Sbjct: 125 KMKARTQQKLVGSVTNSSKKSSNLT---QSSRHKSGTRSSREKSMFSGFTETPKSPKRKN 184

Query: 202 QEPEPSESRDYLKKDSSKRKRS 215
            E    + R      S   +RS
Sbjct: 185 SESSSGKHRSSTSTVSGSSERS 200

[Close]
BLAST of CmoCh01G012780.1 vs. ExPASy TrEMBL
Match: A0A6J1FKY5 (mediator-associated protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111446361 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.0e-106
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0 

Query: 9   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 68
           MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 60

Query: 69  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 128
           HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE
Sbjct: 61  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 120

Query: 129 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 188
           LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP
Sbjct: 121 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 180

Query: 189 SSIKQEPEPSESRDYLKKDSSKRKRSQA 217
           SSIKQEPEPSESRDYLKKDSSKRKRSQA
Sbjct: 181 SSIKQEPEPSESRDYLKKDSSKRKRSQA 208

[Close]
BLAST of CmoCh01G012780.1 vs. ExPASy TrEMBL
Match: A0A6J1J1C8 (LOW QUALITY PROTEIN: mediator-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111480436 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.7e-104
Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0 

Query: 9   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 68
           M N+VGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MSNKVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 60

Query: 69  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 128
           HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE
Sbjct: 61  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 120

Query: 129 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 188
           LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP
Sbjct: 121 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 180

Query: 189 SSIKQEPEPSESRDYLKKDSSKRKR 214
           SSIKQEPEPSESRDYLKKDSSKRKR
Sbjct: 181 SSIKQEPEPSESRDYLKKDSSKRKR 205

[Close]
BLAST of CmoCh01G012780.1 vs. ExPASy TrEMBL
Match: A0A0A0L047 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629490 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 7.9e-83
Identity = 171/206 (83.01%), Postives = 190/206 (92.23%), Query Frame = 0 

Query: 9   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 68
           M +EV A+K+VEGYKPP EFEED REFLTDISL+DS ELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 69  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 128
             PDGH+GSFQGSSGKSYDV+SCVAQEPEASVFLPSSSDTRLVGKI+RRISLVHYPEPEE
Sbjct: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120

Query: 129 LEKAT-PMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSK 188
           LEKAT P+KS+Y+KSSG+SL T+SR TTTSRGPHSSSRRT+S+RSSKPRSS+SE  EPSK
Sbjct: 121 LEKATIPLKSLYQKSSGISL-TNSRQTTTSRGPHSSSRRTTSSRSSKPRSSVSEFTEPSK 180

Query: 189 PSSIKQEPEPSESRDYLKKDSSKRKR 214
            SS+KQE E +ESRD+ +KDSSKRKR
Sbjct: 181 TSSVKQELESTESRDHKRKDSSKRKR 205

[Close]
BLAST of CmoCh01G012780.1 vs. ExPASy TrEMBL
Match: A0A6J1INX8 (mediator-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111476933 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 2.0e-81
Identity = 168/206 (81.55%), Postives = 184/206 (89.32%), Query Frame = 0 

Query: 9   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 68
           M +EV A KSVE YKPPPEFEED REFLTD+SLS+  ELWLIQWPANQ+PDFDGQE SLQ
Sbjct: 1   MSSEVDACKSVERYKPPPEFEEDKREFLTDMSLSNCAELWLIQWPANQSPDFDGQEISLQ 60

Query: 69  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 128
             PDGHLGSF GSSGKSYDVVSCVAQEPEASVFLPSSSD++LV KI RRISLVHYP+PEE
Sbjct: 61  LHPDGHLGSFNGSSGKSYDVVSCVAQEPEASVFLPSSSDSKLVRKIIRRISLVHYPKPEE 120

Query: 129 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 188
           LEKATP+KSVYKKSSG+SL   SR TTTSRGP+SSSRRTSSTRSSKPRSS+SE  EPSKP
Sbjct: 121 LEKATPLKSVYKKSSGISL---SRQTTTSRGPNSSSRRTSSTRSSKPRSSVSEFEEPSKP 180

Query: 189 SSIKQEPEPSESRDYLKKDSSKRKRS 215
            S+KQ+PEP+ESRD+  KDSSKRKR+
Sbjct: 181 LSVKQKPEPTESRDHSPKDSSKRKRT 203

[Close]
BLAST of CmoCh01G012780.1 vs. ExPASy TrEMBL
Match: A0A6J1FBH2 (mediator-associated protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111442553 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.5e-81
Identity = 168/206 (81.55%), Postives = 183/206 (88.83%), Query Frame = 0 

Query: 9   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 68
           M NEV A +SVE YKPPPEFEED RE LTD+SLS+  ELWLIQWPANQAPDFDGQE SLQ
Sbjct: 1   MSNEVDACRSVERYKPPPEFEEDKRELLTDMSLSNCAELWLIQWPANQAPDFDGQELSLQ 60

Query: 69  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 128
             PDGHLGSF GSSGKSYDVVSCVAQEPEASVFLPSSSD++LV KI RRISLVHYP+PEE
Sbjct: 61  LHPDGHLGSFNGSSGKSYDVVSCVAQEPEASVFLPSSSDSKLVRKIIRRISLVHYPKPEE 120

Query: 129 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 188
           LEKATP+KSVYKKSSG+SL   SR TTTSRGP+SSSRRTSSTRSSKPRSS+SE  EPSKP
Sbjct: 121 LEKATPLKSVYKKSSGISL---SRQTTTSRGPNSSSRRTSSTRSSKPRSSVSEFEEPSKP 180

Query: 189 SSIKQEPEPSESRDYLKKDSSKRKRS 215
            S+KQ+PEP+ESRD+  KDSSKRKR+
Sbjct: 181 LSVKQKPEPTESRDHSPKDSSKRKRT 203

[Close]
BLAST of CmoCh01G012780.1 vs. NCBI nr
Match: XP_022940917.1 (mediator-associated protein 2-like [Cucurbita moschata])

HSP 1 Score: 396.0 bits (1016), Expect = 2.1e-106
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0 

Query: 9   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 68
           MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 60

Query: 69  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 128
           HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE
Sbjct: 61  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 120

Query: 129 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 188
           LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP
Sbjct: 121 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 180

Query: 189 SSIKQEPEPSESRDYLKKDSSKRKRSQA 217
           SSIKQEPEPSESRDYLKKDSSKRKRSQA
Sbjct: 181 SSIKQEPEPSESRDYLKKDSSKRKRSQA 208

[Close]
BLAST of CmoCh01G012780.1 vs. NCBI nr
Match: KAG7037421.1 (Mediator-associated protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 393.7 bits (1010), Expect = 1.1e-105
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 0 

Query: 9   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 68
           M NEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MSNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 60

Query: 69  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 128
           HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE
Sbjct: 61  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 120

Query: 129 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 188
           LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP
Sbjct: 121 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 180

Query: 189 SSIKQEPEPSESRDYLKKDSSKRKRSQA 217
           SSIKQEPEPSESRDYLKKDSSKRKRSQA
Sbjct: 181 SSIKQEPEPSESRDYLKKDSSKRKRSQA 208

[Close]
BLAST of CmoCh01G012780.1 vs. NCBI nr
Match: KAG6607894.1 (Mediator-associated protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 391.3 bits (1004), Expect = 5.2e-105
Identity = 206/208 (99.04%), Postives = 206/208 (99.04%), Query Frame = 0 

Query: 9   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 68
           M NEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MSNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 60

Query: 69  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 128
           HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE
Sbjct: 61  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 120

Query: 129 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 188
           LEKATPMKSVYKKSSGMS TTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP
Sbjct: 121 LEKATPMKSVYKKSSGMSQTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 180

Query: 189 SSIKQEPEPSESRDYLKKDSSKRKRSQA 217
           SSIKQEPEPSESRDYLKKDSSKRKRSQA
Sbjct: 181 SSIKQEPEPSESRDYLKKDSSKRKRSQA 208

[Close]
BLAST of CmoCh01G012780.1 vs. NCBI nr
Match: XP_022981239.1 (LOW QUALITY PROTEIN: mediator-associated protein 2-like [Cucurbita maxima])

HSP 1 Score: 387.5 bits (994), Expect = 7.6e-104
Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0 

Query: 9   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 68
           M N+VGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MSNKVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 60

Query: 69  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 128
           HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE
Sbjct: 61  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 120

Query: 129 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 188
           LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP
Sbjct: 121 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 180

Query: 189 SSIKQEPEPSESRDYLKKDSSKRKR 214
           SSIKQEPEPSESRDYLKKDSSKRKR
Sbjct: 181 SSIKQEPEPSESRDYLKKDSSKRKR 205

[Close]
BLAST of CmoCh01G012780.1 vs. NCBI nr
Match: XP_038896123.1 (mediator-associated protein 2 [Benincasa hispida])

HSP 1 Score: 325.9 bits (834), Expect = 2.7e-85
Identity = 177/206 (85.92%), Postives = 188/206 (91.26%), Query Frame = 0 

Query: 9   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 68
           M NEV A  SVEGYKPP EFEED REFLTDISLS+S ELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MINEVDAFISVEGYKPPAEFEEDKREFLTDISLSNSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 69  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 128
             PDG LGSFQGSSGKSYDVVSC+AQ PEASVFLPSSSDTRLVGKI+RRISLVHYPEPEE
Sbjct: 61  LHPDGRLGSFQGSSGKSYDVVSCLAQVPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120

Query: 129 LEKATPMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGEPSKP 188
           LEKATPMKS+Y+KSSG SL T+SR TTTSRGPHSSSRRTSS+RSSKPRSS+SE  EPSKP
Sbjct: 121 LEKATPMKSLYQKSSGTSL-TNSRQTTTSRGPHSSSRRTSSSRSSKPRSSVSEFEEPSKP 180

Query: 189 SSIKQEPEPSESRDYLKKDSSKRKRS 215
           S +KQEPEP+ESRDYLKKDSSKR R+
Sbjct: 181 SIVKQEPEPTESRDYLKKDSSKRNRT 205

[Close]
BLAST of CmoCh01G012780.1 vs. TAIR 10
Match: AT5G64680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 114 Blast hits to 110 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-14
Identity = 66/194 (34.02%), Postives = 96/194 (49.48%), Query Frame = 0 

Query: 22  YKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQHRPDGHLGSFQGS 81
           +K   +F     E L D  L+ S E WLIQ P  Q P+ +     ++   DG  G F+ S
Sbjct: 5   FKVSGDFIVSGAEQLDDTDLTRSDEFWLIQAPLGQFPEIEENTLKIEPDKDGLFGEFKDS 64

Query: 82  SGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEELEKATPMKSVYKK 141
           +G  YD+ S  +Q+  A + +P S ++ +VGKI RR++LV YPEP EL     MK+  ++
Sbjct: 65  NGAKYDLASFHSQDAGAELIIP-SEESMIVGKITRRVALVRYPEPNEL--LQKMKARTQQ 124

Query: 142 SSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGE-PSKPSSIKQEPEPSES 201
               S+T SS+ ++       SSR  S TRSS+ +S  S   E P  P     E    + 
Sbjct: 125 KLVGSVTNSSKKSSNLT---QSSRHKSGTRSSREKSMFSGFTETPKSPKRKNSESSSGKH 184

Query: 202 RDYLKKDSSKRKRS 215
           R      S   +RS
Sbjct: 185 RSSTSTVSGSSERS 192

[Close]
BLAST of CmoCh01G012780.1 vs. TAIR 10
Match: AT5G64680.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-14
Identity = 66/194 (34.02%), Postives = 96/194 (49.48%), Query Frame = 0 

Query: 22  YKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQHRPDGHLGSFQGS 81
           +K   +F     E L D  L+ S E WLIQ P  Q P+ +     ++   DG  G F+ S
Sbjct: 5   FKVSGDFIVSGAEQLDDTDLTRSDEFWLIQAPLGQFPEIEENTLKIEPDKDGLFGEFKDS 64

Query: 82  SGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEELEKATPMKSVYKK 141
           +G  YD+ S  +Q+  A + +P S ++ +VGKI RR++LV YPEP EL     MK+  ++
Sbjct: 65  NGAKYDLASFHSQDAGAELIIP-SEESMIVGKITRRVALVRYPEPNEL--LQKMKARTQQ 124

Query: 142 SSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGE-PSKPSSIKQEPEPSES 201
               S+T SS+ ++       SSR  S TRSS+ +S  S   E P  P     E    + 
Sbjct: 125 KLVGSVTNSSKKSSNLT---QSSRHKSGTRSSREKSMFSGFTETPKSPKRKNSESSSGKH 184

Query: 202 RDYLKKDSSKRKRS 215
           R      S   +RS
Sbjct: 185 RSSTSTVSGSSERS 192

[Close]
BLAST of CmoCh01G012780.1 vs. TAIR 10
Match: AT5G64680.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 20 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 9.4e-12
Identity = 66/202 (32.67%), Postives = 96/202 (47.52%), Query Frame = 0 

Query: 22  YKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQHRPDGHLGSFQGS 81
           +K   +F     E L D  L+ S E WLIQ P  Q P+ +     ++   DG  G F+ S
Sbjct: 5   FKVSGDFIVSGAEQLDDTDLTRSDEFWLIQAPLGQFPEIEENTLKIEPDKDGLFGEFKDS 64

Query: 82  S--------GKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEELEKAT 141
           +        G  YD+ S  +Q+  A + +P S ++ +VGKI RR++LV YPEP EL    
Sbjct: 65  NAGSLHLCLGAKYDLASFHSQDAGAELIIP-SEESMIVGKITRRVALVRYPEPNEL--LQ 124

Query: 142 PMKSVYKKSSGMSLTTSSRPTTTSRGPHSSSRRTSSTRSSKPRSSISECGE-PSKPSSIK 201
            MK+  ++    S+T SS+ ++       SSR  S TRSS+ +S  S   E P  P    
Sbjct: 125 KMKARTQQKLVGSVTNSSKKSSNLT---QSSRHKSGTRSSREKSMFSGFTETPKSPKRKN 184

Query: 202 QEPEPSESRDYLKKDSSKRKRS 215
            E    + R      S   +RS
Sbjct: 185 SESSSGKHRSSTSTVSGSSERS 200

The following BLAST results are available for this feature:
BLAST of CmoCh01G012780.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4KF271.3e-1032.67Mediator-associated protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g64680 PE=1 ... [more]
BLAST of CmoCh01G012780.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FKY51.0e-106100.00mediator-associated protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111446361... [more]
A0A6J1J1C83.7e-10499.02LOW QUALITY PROTEIN: mediator-associated protein 2-like OS=Cucurbita maxima OX=3... [more]
A0A0A0L0477.9e-8383.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629490 PE=4 SV=1[more]
A0A6J1INX82.0e-8181.55mediator-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111476933 P... [more]
A0A6J1FBH22.5e-8181.55mediator-associated protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111442553... [more]
BLAST of CmoCh01G012780.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940917.12.1e-106100.00mediator-associated protein 2-like [Cucurbita moschata][more]
KAG7037421.11.1e-10599.52Mediator-associated protein 2 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6607894.15.2e-10599.04Mediator-associated protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022981239.17.6e-10499.02LOW QUALITY PROTEIN: mediator-associated protein 2-like [Cucurbita maxima][more]
XP_038896123.12.7e-8585.92mediator-associated protein 2 [Benincasa hispida][more]
BLAST of CmoCh01G012780.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G64680.15.9e-1434.02unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G64680.25.9e-1434.02unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G64680.39.4e-1232.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..193
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..216
IPR038823Mediator-associated protein 2, plantPANTHERPTHR36407MEDIATOR-ASSOCIATED PROTEIN 2coord: 9..211

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh01G012780CmoCh01G012780gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh01G012780.1:exon:5883CmoCh01G012780.1:exon:5883exon
CmoCh01G012780.1:exon:5884CmoCh01G012780.1:exon:5884exon
CmoCh01G012780.1:exon:5885CmoCh01G012780.1:exon:5885exon
CmoCh01G012780.1:exon:5886CmoCh01G012780.1:exon:5886exon
CmoCh01G012780.1:exon:5887CmoCh01G012780.1:exon:5887exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh01G012780.1:cdsCmoCh01G012780.1:cdsCDS
CmoCh01G012780.1:cdsCmoCh01G012780.1:cds_2CDS
CmoCh01G012780.1:cdsCmoCh01G012780.1:cds_3CDS
CmoCh01G012780.1:cdsCmoCh01G012780.1:cds_4CDS
CmoCh01G012780.1:cdsCmoCh01G012780.1:cds_5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh01G012780.1:three_prime_utrCmoCh01G012780.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh01G012780.1CmoCh01G012780.1-proteinpolypeptide