Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTGTCGTCTTAGCCACGTTTCCATTAAGAAATGAAATCCCAAACTCACATTTGACCTTCCGTCTATAAAACAAAATCCACAAATTCCCCACTTTAATCTAATACGTTTCCCGAGGAGGAATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGACTGTGGAACCCACAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGAGAATTTTTCTTTTTCTTTGTTATTTCCTTCTCTTTTAGTATAAATGGGAGGGAGTATTTGAGAAGCTGCTCTGTGATCATAAATTATTAAATATTGTGCTCCTTTTTTTTTTTTTTTTTTTTTACATAAATAAAGTTAAATTCAGTTACTTTAGTTAAAGTAAAAAGTATTGGGAAGGCATGTTACTTTATGAACAACAAAAACATTGGTGATTGTAAGGTTCAAACACACATTTGTTGTTACCATATGATTTTAAAAGGGTTCCATTGGAATCATAATGTTTAGCGTTGGGGATTCATTCTTGTTCCCATATAATAAATTGATGTTATTTAA
mRNA sequence
CTTTTGTCGTCTTAGCCACGTTTCCATTAAGAAATGAAATCCCAAACTCACATTTGACCTTCCGTCTATAAAACAAAATCCACAAATTCCCCACTTTAATCTAATACGTTTCCCGAGGAGGAATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGACTGTGGAACCCACAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGAGAATTTTTCTTTTTCTTTGTTATTTCCTTCTCTTTTAGTATAAATGGGAGGGAGTATTTGAGAAGCTGCTCTGTGATCATAAATTATTAAATATTGTGCTCCTTTTTTTTTTTTTTTTTTTTTACATAAATAAAGTTAAATTCAGTTACTTTAGTTAAAGTAAAAAGTATTGGGAAGGCATGTTACTTTATGAACAACAAAAACATTGGTGATTGTAAGGTTCAAACACACATTTGTTGTTACCATATGATTTTAAAAGGGTTCCATTGGAATCATAATGTTTAGCGTTGGGGATTCATTCTTGTTCCCATATAATAAATTGATGTTATTTAA
Coding sequence (CDS)
ATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGACTGTGGAACCCACAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA
Protein sequence
MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGHPVTVVYPSVSNAIPI
Homology
BLAST of Cmc06g0163861.1 vs. NCBI nr
Match:
KAA0060760.1 (uncharacterized protein E6C27_scaffold72G00590 [Cucumis melo var. makuwa])
HSP 1 Score: 167.5 bits (423), Expect = 4.4e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
Query: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
Query: 61 GHPVTVVYPSVSNAIPI 78
GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77
BLAST of Cmc06g0163861.1 vs. NCBI nr
Match:
XP_004150936.1 (uncharacterized protein LOC101215155 [Cucumis sativus] >XP_031738782.1 uncharacterized protein LOC116402768 [Cucumis sativus])
HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0
Query: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
MGV LGVP CI+CGTHRNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1 MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
Query: 61 GHPVTVVYPSVSNAIPI 78
GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77
BLAST of Cmc06g0163861.1 vs. NCBI nr
Match:
XP_023528466.1 (uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0
Query: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
M VG+GVP C++CGTHRNPCRC+VVGP+LGFLA V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1 MAVGIGVPICVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
Query: 61 GHPVTVVYPSVSNAIPI 78
HPVTVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77
BLAST of Cmc06g0163861.1 vs. NCBI nr
Match:
KAE8650630.1 (hypothetical protein Csa_009886 [Cucumis sativus] >KAE8653004.1 hypothetical protein Csa_004549 [Cucumis sativus])
HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0
Query: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
MGV LGVP CI+CGTHRNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1 MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
Query: 61 GHPVTVVYPSV 72
GHPVTVVYPSV
Sbjct: 61 GHPVTVVYPSV 71
BLAST of Cmc06g0163861.1 vs. NCBI nr
Match:
XP_022935253.1 (uncharacterized protein LOC111442190 [Cucurbita moschata])
HSP 1 Score: 147.9 bits (372), Expect = 3.6e-32
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0
Query: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
M VG+GVP C++CGTHRNPCRC+VVGP+LGFLA V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1 MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
Query: 61 GHPVTVVYPSVSNAIPI 78
HPVTVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77
BLAST of Cmc06g0163861.1 vs. ExPASy TrEMBL
Match:
A0A5A7V0B2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00590 PE=4 SV=1)
HSP 1 Score: 167.5 bits (423), Expect = 2.1e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
Query: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
Query: 61 GHPVTVVYPSVSNAIPI 78
GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77
BLAST of Cmc06g0163861.1 vs. ExPASy TrEMBL
Match:
A0A0A0L786 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346920 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 5.8e-36
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0
Query: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
MGV LGVP CI+CGTHRNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1 MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
Query: 61 GHPVTVVYPSVSNAIPI 78
GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77
BLAST of Cmc06g0163861.1 vs. ExPASy TrEMBL
Match:
A0A6J1FA13 (uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC111442190 PE=4 SV=1)
HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0
Query: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
M VG+GVP C++CGTHRNPCRC+VVGP+LGFLA V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1 MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60
Query: 61 GHPVTVVYPSVSNAIPI 78
HPVTVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77
BLAST of Cmc06g0163861.1 vs. ExPASy TrEMBL
Match:
A0A0A0LA45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1)
HSP 1 Score: 145.6 bits (366), Expect = 8.6e-32
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 0
Query: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
MGVG+GVP CI+CGTH NPCRC+VVGP+LGFLA V AVVEWPVGALV+ FRHHKGRRIM
Sbjct: 1 MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
Query: 61 GHPVTVVYPSVSNAIPI 78
HP TVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77
BLAST of Cmc06g0163861.1 vs. ExPASy TrEMBL
Match:
A0A1S3C5Z5 (uncharacterized protein LOC103496843 OS=Cucumis melo OX=3656 GN=LOC103496843 PE=4 SV=1)
HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 71/77 (92.21%), Postives = 71/77 (92.21%), Query Frame = 0
Query: 1 MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
MGVGLGVPFCI CGT RNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH RIM
Sbjct: 1 MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60
Query: 61 GHPVTVVYPSVSNAIPI 78
GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 73
BLAST of Cmc06g0163861.1 vs. TAIR 10
Match:
AT3G03341.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 115.5 bits (288), Expect = 1.8e-26
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 0
Query: 7 VPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGHPVTV 66
+P C+ CGT NPCRC+VVGP+LG +A V +VEWPVGALVY+F+H KGRRIMGHP T
Sbjct: 2 IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61
Query: 67 VYPSVSNAIPI 78
VYP VS +IPI
Sbjct: 62 VYPKVSRSIPI 72
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0060760.1 | 4.4e-38 | 100.00 | uncharacterized protein E6C27_scaffold72G00590 [Cucumis melo var. makuwa] | [more] |
XP_004150936.1 | 1.2e-35 | 94.81 | uncharacterized protein LOC101215155 [Cucumis sativus] >XP_031738782.1 uncharact... | [more] |
XP_023528466.1 | 2.7e-32 | 83.12 | uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo] | [more] |
KAE8650630.1 | 2.7e-32 | 94.37 | hypothetical protein Csa_009886 [Cucumis sativus] >KAE8653004.1 hypothetical pro... | [more] |
XP_022935253.1 | 3.6e-32 | 83.12 | uncharacterized protein LOC111442190 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V0B2 | 2.1e-38 | 100.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A0A0L786 | 5.8e-36 | 94.81 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346920 PE=4 SV=1 | [more] |
A0A6J1FA13 | 1.7e-32 | 83.12 | uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC1114421... | [more] |
A0A0A0LA45 | 8.6e-32 | 81.82 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1 | [more] |
A0A1S3C5Z5 | 1.1e-31 | 92.21 | uncharacterized protein LOC103496843 OS=Cucumis melo OX=3656 GN=LOC103496843 PE=... | [more] |
Match Name | E-value | Identity | Description | |
AT3G03341.1 | 1.8e-26 | 67.61 | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cmc06g0163861.1-exon | Cmc06g0163861.1-exon-CMiso1.1chr06:13910714..13911402 | exon |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cmc06g0163861.1-five_prime_utr | Cmc06g0163861.1-five_prime_utr-CMiso1.1chr06:13910714..13910835 | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cmc06g0163861.1-cds | Cmc06g0163861.1-cds-CMiso1.1chr06:13910836..13911069 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cmc06g0163861.1-three_prime_utr | Cmc06g0163861.1-three_prime_utr-CMiso1.1chr06:13911070..13911402 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Cmc06g0163861.1 | Cmc06g0163861.1-protein | polypeptide |