Cmc06g0163861 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0163861
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Cold-regulated protein, putative
Location	CMiso1.1chr06: 13910714 .. 13911402 (+)
RNA-Seq Expression	Cmc06g0163861
Synteny	Cmc06g0163861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTGTCGTCTTAGCCACGTTTCCATTAAGAAATGAAATCCCAAACTCACATTTGACCTTCCGTCTATAAAACAAAATCCACAAATTCCCCACTTTAATCTAATACGTTTCCCGAGGAGGAATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGACTGTGGAACCCACAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGAGAATTTTTCTTTTTCTTTGTTATTTCCTTCTCTTTTAGTATAAATGGGAGGGAGTATTTGAGAAGCTGCTCTGTGATCATAAATTATTAAATATTGTGCTCCTTTTTTTTTTTTTTTTTTTTTACATAAATAAAGTTAAATTCAGTTACTTTAGTTAAAGTAAAAAGTATTGGGAAGGCATGTTACTTTATGAACAACAAAAACATTGGTGATTGTAAGGTTCAAACACACATTTGTTGTTACCATATGATTTTAAAAGGGTTCCATTGGAATCATAATGTTTAGCGTTGGGGATTCATTCTTGTTCCCATATAATAAATTGATGTTATTTAA

mRNA sequence

CTTTTGTCGTCTTAGCCACGTTTCCATTAAGAAATGAAATCCCAAACTCACATTTGACCTTCCGTCTATAAAACAAAATCCACAAATTCCCCACTTTAATCTAATACGTTTCCCGAGGAGGAATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGACTGTGGAACCCACAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGAGAATTTTTCTTTTTCTTTGTTATTTCCTTCTCTTTTAGTATAAATGGGAGGGAGTATTTGAGAAGCTGCTCTGTGATCATAAATTATTAAATATTGTGCTCCTTTTTTTTTTTTTTTTTTTTTACATAAATAAAGTTAAATTCAGTTACTTTAGTTAAAGTAAAAAGTATTGGGAAGGCATGTTACTTTATGAACAACAAAAACATTGGTGATTGTAAGGTTCAAACACACATTTGTTGTTACCATATGATTTTAAAAGGGTTCCATTGGAATCATAATGTTTAGCGTTGGGGATTCATTCTTGTTCCCATATAATAAATTGATGTTATTTAA

Coding sequence (CDS)

ATGGGTGTGGGACTGGGCGTTCCCTTCTGCATCGACTGTGGAACCCACAGGAACCCGTGCAGGTGCAGGGTGGTGGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCTGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGGCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

Protein sequence

MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGHPVTVVYPSVSNAIPI

Homology

[Close]

BLAST of Cmc06g0163861 vs. NCBI nr
Match: KAA0060760.1 (uncharacterized protein E6C27_scaffold72G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 4.4e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of Cmc06g0163861 vs. NCBI nr
Match: XP_004150936.1 (uncharacterized protein LOC101215155 [Cucumis sativus] >XP_031738782.1 uncharacterized protein LOC116402768 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGV LGVP CI+CGTHRNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of Cmc06g0163861 vs. NCBI nr
Match: XP_023528466.1 (uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M VG+GVP C++CGTHRNPCRC+VVGP+LGFLA  V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1  MAVGIGVPICVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HPVTVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of Cmc06g0163861 vs. NCBI nr
Match: KAE8650630.1 (hypothetical protein Csa_009886 [Cucumis sativus] >KAE8653004.1 hypothetical protein Csa_004549 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGV LGVP CI+CGTHRNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSV 72
          GHPVTVVYPSV
Sbjct: 61 GHPVTVVYPSV 71

[Close]

BLAST of Cmc06g0163861 vs. NCBI nr
Match: XP_022935253.1 (uncharacterized protein LOC111442190 [Cucurbita moschata])

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-32
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M VG+GVP C++CGTHRNPCRC+VVGP+LGFLA  V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HPVTVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of Cmc06g0163861 vs. ExPASy TrEMBL
Match: A0A5A7V0B2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00590 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.1e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of Cmc06g0163861 vs. ExPASy TrEMBL
Match: A0A0A0L786 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346920 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.8e-36
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGV LGVP CI+CGTHRNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of Cmc06g0163861 vs. ExPASy TrEMBL
Match: A0A6J1FA13 (uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC111442190 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M VG+GVP C++CGTHRNPCRC+VVGP+LGFLA  V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HPVTVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of Cmc06g0163861 vs. ExPASy TrEMBL
Match: A0A0A0LA45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.6e-32
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGVG+GVP CI+CGTH NPCRC+VVGP+LGFLA  V AVVEWPVGALV+ FRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HP TVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of Cmc06g0163861 vs. ExPASy TrEMBL
Match: A0A1S3C5Z5 (uncharacterized protein LOC103496843 OS=Cucumis melo OX=3656 GN=LOC103496843 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 71/77 (92.21%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGVGLGVPFCI CGT RNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH    RIM
Sbjct: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 73

[Close]

BLAST of Cmc06g0163861 vs. TAIR 10
Match: AT3G03341.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-26
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 7  VPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGHPVTV 66
          +P C+ CGT  NPCRC+VVGP+LG +A V   +VEWPVGALVY+F+H KGRRIMGHP T 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAIPI 78
          VYP VS +IPI
Sbjct: 62 VYPKVSRSIPI 72

The following BLAST results are available for this feature:

BLAST of Cmc06g0163861 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060760.1	4.4e-38	100.00	uncharacterized protein E6C27_scaffold72G00590 [Cucumis melo var. makuwa]	[more]
XP_004150936.1	1.2e-35	94.81	uncharacterized protein LOC101215155 [Cucumis sativus] >XP_031738782.1 uncharact...	[more]
XP_023528466.1	2.7e-32	83.12	uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo]	[more]
KAE8650630.1	2.7e-32	94.37	hypothetical protein Csa_009886 [Cucumis sativus] >KAE8653004.1 hypothetical pro...	[more]
XP_022935253.1	3.6e-32	83.12	uncharacterized protein LOC111442190 [Cucurbita moschata]	[more]

BLAST of Cmc06g0163861 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc06g0163861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0B2	2.1e-38	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0L786	5.8e-36	94.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346920 PE=4 SV=1	[more]
A0A6J1FA13	1.7e-32	83.12	uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A0A0LA45	8.6e-32	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1	[more]
A0A1S3C5Z5	1.1e-31	92.21	uncharacterized protein LOC103496843 OS=Cucumis melo OX=3656 GN=LOC103496843 PE=...	[more]

BLAST of Cmc06g0163861 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03341.1	1.8e-26	67.61	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673:SF2	BNAA10G17250D PROTEIN	coord: 8..77
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 8..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0163861.1	Cmc06g0163861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane