Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATGTCACCTTCGACCCCCTTTTCAATATTTAGAGGACTGGATTGAATACTGTTTGATCTTTTGGTCGGTGGTATGCGTTTTAAGTAGTTAAACTATGTTTAGGTTTGCAATTTTAATTTCTTGTTTTCAGTTCGTGTATATTTAGGTAG
mRNA sequence
ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATTTCGTGTATATTTAGGTAG
Coding sequence (CDS)
ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATTTCGTGTATATTTAGGTAG
Protein sequence
MQEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKPNPSQQLNLFFPPKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQISCIFR
Homology
BLAST of CmaCh01G013190.1 vs. ExPASy TrEMBL
Match:
A0A6J1IXB3 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480775 PE=4 SV=1)
HSP 1 Score: 197.6 bits (501), Expect = 3.1e-47
Identity = 102/121 (84.30%), Postives = 104/121 (85.95%), Query Frame = 0
Query: 2 QEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKPNPSQQLNLFFPPKNS 61
+EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP
Sbjct: 158 EEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP--------------- 217
Query: 62 FFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQI 121
NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQ+
Sbjct: 218 --NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQM 261
Query: 122 S 123
S
Sbjct: 278 S 261
BLAST of CmaCh01G013190.1 vs. ExPASy TrEMBL
Match:
A0A6J1C187 (transcription factor JUNGBRUNNEN 1 OS=Momordica charantia OX=3673 GN=LOC111007339 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 71/153 (46.41%), Postives = 84/153 (54.90%), Query Frame = 0
Query: 3 EVWTLCRIFRRIPSIRKYSP------------IISPIP------QNPNNNS--------- 62
EVWTLCRIFRR+PS RKY+P I +PIP QNPN +S
Sbjct: 191 EVWTLCRIFRRVPSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN 250
Query: 63 ----FPTLIDLETKPNP-SQQLNLFFPPKNSFFNPSLTLPYDSF-EPSSLYPSSFWNGVD 122
F T + ETKPNP SQQLN+ FNP+L L + F EPSS YPSSF N VD
Sbjct: 251 TTSPFSTPLHHETKPNPNSQQLNI--------FNPNLPLSHAIFLEPSSSYPSSFRNDVD 310
BLAST of CmaCh01G013190.1 vs. ExPASy TrEMBL
Match:
A0A0A0L479 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G608170 PE=4 SV=1)
HSP 1 Score: 86.7 bits (213), Expect = 7.8e-14
Identity = 62/150 (41.33%), Postives = 77/150 (51.33%), Query Frame = 0
Query: 3 EVWTLCRIFRRIPSIRKYSPIIS---------PIPQNPNNNSF----------------- 62
EVWTLCRI +RIPS +KY P + P PQNPNN++
Sbjct: 175 EVWTLCRILKRIPSFKKYIPTLHNNNNDNQTYPKPQNPNNSNIIFTSKPKTNFQSQPYST 234
Query: 63 --PTLIDLETKPNPSQQLNLFFPPKNSFFNPSLTLP--YDSFEPSSLYPSSFWNGVDGGG 122
LI LETKP P +QL NP+LTLP SFE S + SSFWNGV+G
Sbjct: 235 GHHHLIHLETKPKPFEQLT----------NPNLTLPSCASSFESSPICLSSFWNGVEG-- 294
BLAST of CmaCh01G013190.1 vs. ExPASy TrEMBL
Match:
A0A1S3CTC4 (transcription factor JUNGBRUNNEN 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504119 PE=4 SV=1)
HSP 1 Score: 84.3 bits (207), Expect = 3.9e-13
Identity = 63/152 (41.45%), Postives = 77/152 (50.66%), Query Frame = 0
Query: 3 EVWTLCRIFRRIPSIRKYSPIIS---------PIPQNPNNN-------------SFPTLI 62
EVWTLCRIF+RIPS +KY P + P PQNPNN+ S P
Sbjct: 175 EVWTLCRIFKRIPSFKKYIPTHNNNNNNNQTYPKPQNPNNSNIIFTSKPKTNFQSQPYST 234
Query: 63 DL-------ETKPNPSQQLNLFFPPKNSFFNPSLTLP---YDSFEPSSLYPSSFWNGVDG 122
D+ ETKP P +QL NP+LTLP SFE S + SS WNGV+G
Sbjct: 235 DIHHLIHLHETKPKPFEQLT----------NPNLTLPSCANSSFESSPICLSSLWNGVEG 294
BLAST of CmaCh01G013190.1 vs. NCBI nr
Match:
XP_022981711.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima])
HSP 1 Score: 197.6 bits (501), Expect = 6.5e-47
Identity = 102/121 (84.30%), Postives = 104/121 (85.95%), Query Frame = 0
Query: 2 QEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKPNPSQQLNLFFPPKNS 61
+EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP
Sbjct: 158 EEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP--------------- 217
Query: 62 FFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQI 121
NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQ+
Sbjct: 218 --NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQM 261
Query: 122 S 123
S
Sbjct: 278 S 261
BLAST of CmaCh01G013190.1 vs. NCBI nr
Match:
KAG6607984.1 (Transcription factor JUNGBRUNNEN 1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 181.4 bits (459), Expect = 4.8e-42
Identity = 96/125 (76.80%), Postives = 101/125 (80.80%), Query Frame = 0
Query: 3 EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNS-----FPTLIDLETKPNPSQQLNLFFP 62
EVWTLCRIFRRIPSIRKYSPI+SPIPQNPNNNS FPTLIDLETKP
Sbjct: 63 EVWTLCRIFRRIPSIRKYSPIMSPIPQNPNNNSFQSHPFPTLIDLETKP----------- 122
Query: 63 PKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQL 122
NPSLTLPY SFEPS LYPSSFWNG+DGGGGGGGRDGGGGGGD+FTSGGW+ELQL
Sbjct: 123 ------NPSLTLPYASFEPSFLYPSSFWNGIDGGGGGGGRDGGGGGGDIFTSGGWDELQL 170
BLAST of CmaCh01G013190.1 vs. NCBI nr
Match:
XP_023523438.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 165.2 bits (417), Expect = 3.6e-37
Identity = 93/125 (74.40%), Postives = 96/125 (76.80%), Query Frame = 0
Query: 3 EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNS-----FPTLIDLETKPNPSQQLNLFFP 62
EVWTLCRIFRRIPSIRKYSPI+SPIPQNPNNNS FPTLIDLETKP
Sbjct: 159 EVWTLCRIFRRIPSIRKYSPIMSPIPQNPNNNSFNSHPFPTLIDLETKP----------- 218
Query: 63 PKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQL 122
NPSLTLPY SFEPSSLYPSSFWNGVDGGG G GGGGGGDV TSGGW+ELQL
Sbjct: 219 ------NPSLTLPYASFEPSSLYPSSFWNGVDGGGRDG---GGGGGGDVLTSGGWDELQL 263
BLAST of CmaCh01G013190.1 vs. NCBI nr
Match:
KAG7037498.1 (NAC domain-containing protein 73, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 59/82 (71.95%), Postives = 63/82 (76.83%), Query Frame = 0
Query: 41 DLETKPNPSQQLNLFFPPKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGG 100
DLETKP NPSLTLPY SFEPS LYPSSFWNG+DGGGGGGGRDGG
Sbjct: 233 DLETKP-----------------NPSLTLPYASFEPSFLYPSSFWNGIDGGGGGGGRDGG 292
Query: 101 GGGGDVFTSGGWNELQLVVQIS 123
GGGGD+FTSGGW+ELQLVVQ+S
Sbjct: 293 GGGGDIFTSGGWDELQLVVQMS 297
BLAST of CmaCh01G013190.1 vs. NCBI nr
Match:
XP_038899483.1 (transcription factor JUNGBRUNNEN 1 isoform X1 [Benincasa hispida])
HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 70/154 (45.45%), Postives = 78/154 (50.65%), Query Frame = 0
Query: 3 EVWTLCRIFRRIPSIRKYSPI------------------ISPIPQNPNN-----NSFPT- 62
EVWTLCRIF+RIPS +KY P +S IPQNPNN NS P
Sbjct: 170 EVWTLCRIFKRIPSFKKYIPTNNNNVLKNNDDDNNNFNQVSLIPQNPNNSNIIFNSKPNT 229
Query: 63 ----------LIDLETKPNPSQQLNLFFPPKNSFFNPSLTLPY-DSFEPSSLYPSSFWNG 121
LI LETKP PS +LT PY SFEPSS+ PSSFWNG
Sbjct: 230 KYQSQPYSNDLIHLETKPKPS----------------NLTPPYASSFEPSSICPSSFWNG 289
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1IXB3 | 3.1e-47 | 84.30 | transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480... | [more] |
| A0A6J1C187 | 1.4e-15 | 46.41 | transcription factor JUNGBRUNNEN 1 OS=Momordica charantia OX=3673 GN=LOC11100733... | [more] |
| A0A0A0L479 | 7.8e-14 | 41.33 | NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G608170 PE=4 SV... | [more] |
| A0A1S3CTC4 | 3.9e-13 | 41.45 | transcription factor JUNGBRUNNEN 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022981711.1 | 6.5e-47 | 84.30 | transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima] | [more] |
| KAG6607984.1 | 4.8e-42 | 76.80 | Transcription factor JUNGBRUNNEN 1, partial [Cucurbita argyrosperma subsp. soror... | [more] |
| XP_023523438.1 | 3.6e-37 | 74.40 | transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG7037498.1 | 1.0e-20 | 71.95 | NAC domain-containing protein 73, partial [Cucurbita argyrosperma subsp. argyros... | [more] |
| XP_038899483.1 | 1.3e-15 | 45.45 | transcription factor JUNGBRUNNEN 1 isoform X1 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
