CmaCh01G013190.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G013190.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor JUNGBRUNNEN 1-like
Location	Cma_Chr01: 9410941 .. 9411449 (-)
Sequence length	381
RNA-Seq Expression	CmaCh01G013190.1
Synteny	CmaCh01G013190.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATGTCACCTTCGACCCCCTTTTCAATATTTAGAGGACTGGATTGAATACTGTTTGATCTTTTGGTCGGTGGTATGCGTTTTAAGTAGTTAAACTATGTTTAGGTTTGCAATTTTAATTTCTTGTTTTCAGTTCGTGTATATTTAGGTAG

mRNA sequence

ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATTTCGTGTATATTTAGGTAG

Coding sequence (CDS)

ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATTTCGTGTATATTTAGGTAG

Protein sequence

MQEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKPNPSQQLNLFFPPKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQISCIFR

Homology

[Close]

BLAST of CmaCh01G013190.1 vs. ExPASy TrEMBL
Match: A0A6J1IXB3 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480775 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.1e-47
Identity = 102/121 (84.30%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 2   QEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKPNPSQQLNLFFPPKNS 61
           +EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP               
Sbjct: 158 EEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP--------------- 217

Query: 62  FFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQI 121
             NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQ+
Sbjct: 218 --NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQM 261

Query: 122 S 123
           S
Sbjct: 278 S 261

[Close]

BLAST of CmaCh01G013190.1 vs. ExPASy TrEMBL
Match: A0A6J1C187 (transcription factor JUNGBRUNNEN 1 OS=Momordica charantia OX=3673 GN=LOC111007339 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 71/153 (46.41%), Postives = 84/153 (54.90%), Query Frame = 0


Query: 3   EVWTLCRIFRRIPSIRKYSP------------IISPIP------QNPNNNS--------- 62
           EVWTLCRIFRR+PS RKY+P            I +PIP      QNPN +S         
Sbjct: 191 EVWTLCRIFRRVPSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN 250

Query: 63  ----FPTLIDLETKPNP-SQQLNLFFPPKNSFFNPSLTLPYDSF-EPSSLYPSSFWNGVD 122
               F T +  ETKPNP SQQLN+        FNP+L L +  F EPSS YPSSF N VD
Sbjct: 251 TTSPFSTPLHHETKPNPNSQQLNI--------FNPNLPLSHAIFLEPSSSYPSSFRNDVD 310

[Close]

BLAST of CmaCh01G013190.1 vs. ExPASy TrEMBL
Match: A0A0A0L479 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G608170 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.8e-14
Identity = 62/150 (41.33%), Postives = 77/150 (51.33%), Query Frame = 0


Query: 3   EVWTLCRIFRRIPSIRKYSPIIS---------PIPQNPNNNSF----------------- 62
           EVWTLCRI +RIPS +KY P +          P PQNPNN++                  
Sbjct: 175 EVWTLCRILKRIPSFKKYIPTLHNNNNDNQTYPKPQNPNNSNIIFTSKPKTNFQSQPYST 234

Query: 63  --PTLIDLETKPNPSQQLNLFFPPKNSFFNPSLTLP--YDSFEPSSLYPSSFWNGVDGGG 122
               LI LETKP P +QL           NP+LTLP    SFE S +  SSFWNGV+G  
Sbjct: 235 GHHHLIHLETKPKPFEQLT----------NPNLTLPSCASSFESSPICLSSFWNGVEG-- 294

[Close]

BLAST of CmaCh01G013190.1 vs. ExPASy TrEMBL
Match: A0A1S3CTC4 (transcription factor JUNGBRUNNEN 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504119 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-13
Identity = 63/152 (41.45%), Postives = 77/152 (50.66%), Query Frame = 0


Query: 3   EVWTLCRIFRRIPSIRKYSPIIS---------PIPQNPNNN-------------SFPTLI 62
           EVWTLCRIF+RIPS +KY P  +         P PQNPNN+             S P   
Sbjct: 175 EVWTLCRIFKRIPSFKKYIPTHNNNNNNNQTYPKPQNPNNSNIIFTSKPKTNFQSQPYST 234

Query: 63  DL-------ETKPNPSQQLNLFFPPKNSFFNPSLTLP---YDSFEPSSLYPSSFWNGVDG 122
           D+       ETKP P +QL           NP+LTLP     SFE S +  SS WNGV+G
Sbjct: 235 DIHHLIHLHETKPKPFEQLT----------NPNLTLPSCANSSFESSPICLSSLWNGVEG 294

[Close]

BLAST of CmaCh01G013190.1 vs. NCBI nr
Match: XP_022981711.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima])

HSP 1 Score: 197.6 bits (501), Expect = 6.5e-47
Identity = 102/121 (84.30%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 2   QEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKPNPSQQLNLFFPPKNS 61
           +EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP               
Sbjct: 158 EEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP--------------- 217

Query: 62  FFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQI 121
             NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQ+
Sbjct: 218 --NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQM 261

Query: 122 S 123
           S
Sbjct: 278 S 261

[Close]

BLAST of CmaCh01G013190.1 vs. NCBI nr
Match: KAG6607984.1 (Transcription factor JUNGBRUNNEN 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 4.8e-42
Identity = 96/125 (76.80%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 3   EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNS-----FPTLIDLETKPNPSQQLNLFFP 62
           EVWTLCRIFRRIPSIRKYSPI+SPIPQNPNNNS     FPTLIDLETKP           
Sbjct: 63  EVWTLCRIFRRIPSIRKYSPIMSPIPQNPNNNSFQSHPFPTLIDLETKP----------- 122

Query: 63  PKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQL 122
                 NPSLTLPY SFEPS LYPSSFWNG+DGGGGGGGRDGGGGGGD+FTSGGW+ELQL
Sbjct: 123 ------NPSLTLPYASFEPSFLYPSSFWNGIDGGGGGGGRDGGGGGGDIFTSGGWDELQL 170

[Close]

BLAST of CmaCh01G013190.1 vs. NCBI nr
Match: XP_023523438.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 3.6e-37
Identity = 93/125 (74.40%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 3   EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNS-----FPTLIDLETKPNPSQQLNLFFP 62
           EVWTLCRIFRRIPSIRKYSPI+SPIPQNPNNNS     FPTLIDLETKP           
Sbjct: 159 EVWTLCRIFRRIPSIRKYSPIMSPIPQNPNNNSFNSHPFPTLIDLETKP----------- 218

Query: 63  PKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQL 122
                 NPSLTLPY SFEPSSLYPSSFWNGVDGGG  G   GGGGGGDV TSGGW+ELQL
Sbjct: 219 ------NPSLTLPYASFEPSSLYPSSFWNGVDGGGRDG---GGGGGGDVLTSGGWDELQL 263

[Close]

BLAST of CmaCh01G013190.1 vs. NCBI nr
Match: KAG7037498.1 (NAC domain-containing protein 73, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 59/82 (71.95%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 41  DLETKPNPSQQLNLFFPPKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGG 100
           DLETKP                 NPSLTLPY SFEPS LYPSSFWNG+DGGGGGGGRDGG
Sbjct: 233 DLETKP-----------------NPSLTLPYASFEPSFLYPSSFWNGIDGGGGGGGRDGG 292

Query: 101 GGGGDVFTSGGWNELQLVVQIS 123
           GGGGD+FTSGGW+ELQLVVQ+S
Sbjct: 293 GGGGDIFTSGGWDELQLVVQMS 297

[Close]

BLAST of CmaCh01G013190.1 vs. NCBI nr
Match: XP_038899483.1 (transcription factor JUNGBRUNNEN 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 70/154 (45.45%), Postives = 78/154 (50.65%), Query Frame = 0


Query: 3   EVWTLCRIFRRIPSIRKYSPI------------------ISPIPQNPNN-----NSFPT- 62
           EVWTLCRIF+RIPS +KY P                   +S IPQNPNN     NS P  
Sbjct: 170 EVWTLCRIFKRIPSFKKYIPTNNNNVLKNNDDDNNNFNQVSLIPQNPNNSNIIFNSKPNT 229

Query: 63  ----------LIDLETKPNPSQQLNLFFPPKNSFFNPSLTLPY-DSFEPSSLYPSSFWNG 121
                     LI LETKP PS                +LT PY  SFEPSS+ PSSFWNG
Sbjct: 230 KYQSQPYSNDLIHLETKPKPS----------------NLTPPYASSFEPSSICPSSFWNG 289

The following BLAST results are available for this feature:

BLAST of CmaCh01G013190.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G013190.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IXB3	3.1e-47	84.30	transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480...	[more]
A0A6J1C187	1.4e-15	46.41	transcription factor JUNGBRUNNEN 1 OS=Momordica charantia OX=3673 GN=LOC11100733...	[more]
A0A0A0L479	7.8e-14	41.33	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G608170 PE=4 SV...	[more]
A0A1S3CTC4	3.9e-13	41.45	transcription factor JUNGBRUNNEN 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of CmaCh01G013190.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981711.1	6.5e-47	84.30	transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima]	[more]
KAG6607984.1	4.8e-42	76.80	Transcription factor JUNGBRUNNEN 1, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023523438.1	3.6e-37	74.40	transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7037498.1	1.0e-20	71.95	NAC domain-containing protein 73, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_038899483.1	1.3e-15	45.45	transcription factor JUNGBRUNNEN 1 isoform X1 [Benincasa hispida]	[more]

BLAST of CmaCh01G013190.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh01G013190	CmaCh01G013190	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013190.1:exon:1239	CmaCh01G013190.1:exon:1239	exon
CmaCh01G013190.1:exon:1240	CmaCh01G013190.1:exon:1240	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013190.1:cds	CmaCh01G013190.1:cds_2	CDS
CmaCh01G013190.1:cds	CmaCh01G013190.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013190.1	CmaCh01G013190.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding