Cla97C11G216252.1 (mRNA) Watermelon (97103) v2.5

Overview


Name	Cla97C11G216252.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Unknown protein
Location	Cla97Chr11: 16241015 .. 16242175 (+)
Sequence length	1161
RNA-Seq Expression	Cla97C11G216252.1
Synteny	Cla97C11G216252.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTAATGGAGGACGCAATCCGGGTATTGGCGAAGCCAGGGGCCAAGTGGGATGTTTCACCCACAAGTATAAAAACGCTATCAGCTAGCAGCCTAAGACCAGAGGCAAACCTGTGGGTGTACTTGGTGAAGAAGCGACAGATCCCTACAACGCATGACAAGACAGTGTCAAGGGATCGGGTAATGGCAGCATATTGCATTATGCGTCGCATCACCCTTGATGTTGGACGCATAATTGCGGCGCAGATAAGAGGGGTGTTCAACAAGCCAAGGGGTCAACTCTTTTTCCCCACTCTTATCATGAACTTATACGCCAATGCTTCCATCGGAGGCCCAACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGTGGCGTAATCGCCCACAAGACTCTGCGTTGGTTGATGAGAGGATCACAACATCTGCCAGAGCCTGCCAAGGCCACCAAAAGACCTCATCAACCCATTCTGCCTCCAAAGCCGCAACCGCAGAAGAAGGGGAAGCCGTCCAAGTTGAAGGCCGTGGCAAATCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCCCTTCACCACCACTTCCAACAACCAGAAGGGAACCAACTCCAACTCCACCTCCTCCTAAGACGCATCGCCCTAAGCCACCTCCACCTTCTCATAAAACGCATCGCCCCAAACATCCAAAACCTCGACCTTCCACAAAACCCTCCGCCCCAATACGAGTTGATGACTCACACTTTGGGGATCTTGGCGCGACTGTTATGCGTCCATTATCCCCTGCATTTGACGAAACTCCATCCACTCCCCCACCTCAACCAAACCCGTCTACTCCACCTCAGCCAAACTCGCCTACCCCACCAACGCAACCACAACTGCAAGAAGGCCAACTTGACCTCGAGTGGGAGACAGTGCAAACGTATCTGCAGCAATCGATCTTGCGTCCTGTGATGCACTCATTAAATATGTTAGCACACAGGCAGATGGAGCAGTTCCAATTCACATTAAATTACGTTCATCAAATGCTCTCTATCCGACCGGAAATCCCGCCCCCTGATATTCCAGAACGCCTCCAACAGCCCCTTGTCTTTCCAGTACCGCAGCGCCCTGCACCTGAGCAGCAACGCAGACCTAATGAAGACGAGACTGATGGTTAA

mRNA sequence

ATGGAGTTAATGGAGGACGCAATCCGGGTATTGGCGAAGCCAGGGGCCAAGTGGGATGTTTCACCCACAAGTATAAAAACGCTATCAGCTAGCAGCCTAAGACCAGAGGCAAACCTGTGGGTGTACTTGGTGAAGAAGCGACAGATCCCTACAACGCATGACAAGACAGTGTCAAGGGATCGGGTAATGGCAGCATATTGCATTATGCGTCGCATCACCCTTGATGTTGGACGCATAATTGCGGCGCAGATAAGAGGGGTGTTCAACAAGCCAAGGGGTCAACTCTTTTTCCCCACTCTTATCATGAACTTATACGCCAATGCTTCCATCGGAGGCCCAACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGTGGCGTAATCGCCCACAAGACTCTGCGTTGGTTGATGAGAGGATCACAACATCTGCCAGAGCCTGCCAAGGCCACCAAAAGACCTCATCAACCCATTCTGCCTCCAAAGCCGCAACCGCAGAAGAAGGGGAAGCCGTCCAAGTTGAAGGCCGTGGCAAATCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCCCTTCACCACCACTTCCAACAACCAGAAGGGAACCAACTCCAACTCCACCTCCTCCTAAGACGCATCGCCCTAAGCCACCTCCACCTTCTCATAAAACGCATCGCCCCAAACATCCAAAACCTCGACCTTCCACAAAACCCTCCGCCCCAATACGAGTTGATGACTCACACTTTGGGGATCTTGGCGCGACTGTTATGCGTCCATTATCCCCTGCATTTGACGAAACTCCATCCACTCCCCCACCTCAACCAAACCCGTCTACTCCACCTCAGCCAAACTCGCCTACCCCACCAACGCAACCACAACTGCAAGAAGGCCAACTTGACCTCGAGTGGGAGACAGTGCAAACGTATCTGCAGCAATCGATCTTGCGTCCTGTGATGCACTCATTAAATATGTTAGCACACAGGCAGATGGAGCAGTTCCAATTCACATTAAATTACGTTCATCAAATGCTCTCTATCCGACCGGAAATCCCGCCCCCTGATATTCCAGAACGCCTCCAACAGCCCCTTGTCTTTCCAGTACCGCAGCGCCCTGCACCTGAGCAGCAACGCAGACCTAATGAAGACGAGACTGATGGTTAA

Coding sequence (CDS)

ATGGAGTTAATGGAGGACGCAATCCGGGTATTGGCGAAGCCAGGGGCCAAGTGGGATGTTTCACCCACAAGTATAAAAACGCTATCAGCTAGCAGCCTAAGACCAGAGGCAAACCTGTGGGTGTACTTGGTGAAGAAGCGACAGATCCCTACAACGCATGACAAGACAGTGTCAAGGGATCGGGTAATGGCAGCATATTGCATTATGCGTCGCATCACCCTTGATGTTGGACGCATAATTGCGGCGCAGATAAGAGGGGTGTTCAACAAGCCAAGGGGTCAACTCTTTTTCCCCACTCTTATCATGAACTTATACGCCAATGCTTCCATCGGAGGCCCAACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGTGGCGTAATCGCCCACAAGACTCTGCGTTGGTTGATGAGAGGATCACAACATCTGCCAGAGCCTGCCAAGGCCACCAAAAGACCTCATCAACCCATTCTGCCTCCAAAGCCGCAACCGCAGAAGAAGGGGAAGCCGTCCAAGTTGAAGGCCGTGGCAAATCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCCCTTCACCACCACTTCCAACAACCAGAAGGGAACCAACTCCAACTCCACCTCCTCCTAAGACGCATCGCCCTAAGCCACCTCCACCTTCTCATAAAACGCATCGCCCCAAACATCCAAAACCTCGACCTTCCACAAAACCCTCCGCCCCAATACGAGTTGATGACTCACACTTTGGGGATCTTGGCGCGACTGTTATGCGTCCATTATCCCCTGCATTTGACGAAACTCCATCCACTCCCCCACCTCAACCAAACCCGTCTACTCCACCTCAGCCAAACTCGCCTACCCCACCAACGCAACCACAACTGCAAGAAGGCCAACTTGACCTCGAGTGGGAGACAGTGCAAACGTATCTGCAGCAATCGATCTTGCGTCCTGTGATGCACTCATTAAATATGTTAGCACACAGGCAGATGGAGCAGTTCCAATTCACATTAAATTACGTTCATCAAATGCTCTCTATCCGACCGGAAATCCCGCCCCCTGATATTCCAGAACGCCTCCAACAGCCCCTTGTCTTTCCAGTACCGCAGCGCCCTGCACCTGAGCAGCAACGCAGACCTAATGAAGACGAGACTGATGGTTAA

Protein sequence

MELMEDAIRVLAKPGAKWDVSPTSIKTLSASSLRPEANLWVYLVKKRQIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAAQIRGVFNKPRGQLFFPTLIMNLYANASIGGPTEVLDAEKMIEVSGVIAHKTLRWLMRGSQHLPEPAKATKRPHQPILPPKPQPQKKGKPSKLKAVANPDATIRPSPTSSPSPPLPTTRREPTPTPPPPKTHRPKPPPPSHKTHRPKHPKPRPSTKPSAPIRVDDSHFGDLGATVMRPLSPAFDETPSTPPPQPNPSTPPQPNSPTPPTQPQLQEGQLDLEWETVQTYLQQSILRPVMHSLNMLAHRQMEQFQFTLNYVHQMLSIRPEIPPPDIPERLQQPLVFPVPQRPAPEQQRRPNEDETDG

Homology

[Close]

BLAST of Cla97C11G216252.1 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-20
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 2   ELMEDAIRVLAKPGAKWDVSPTSIKTLSASSLRPEANLWVYLVKKRQIPTTHDKTVSRDR 61
           E MEDA+R L + G +W VS   IKTL++S L PEA LWVYLVK+R IPT+HDKTVSRDR
Sbjct: 269 EKMEDALRTLTQSGTQWSVSLKGIKTLASSKLLPEARLWVYLVKRRIIPTSHDKTVSRDR 328

Query: 62  VMAAYCIMRRITLDVGRIIAAQIRGVFNKPRGQ 95
           VMAAYCI   I +DV  +IAAQ +    + + Q
Sbjct: 329 VMAAYCIACGILIDVSHLIAAQAKEAAQRKQRQ 361

[Close]

BLAST of Cla97C11G216252.1 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 3.5e-19
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 4   MEDAIRVLAKPGAKWDVSPTSIKTLSASSLRPEANLWVYLVKKRQIPTTHDKTVSRDRVM 63
           MEDA++VL + G KW VS   + TL++ SL  E  LWVYLVKKR I TTHDKTVSRDRVM
Sbjct: 332 MEDALQVLMQLGMKWSVSLKGVSTLASKSLLLEGRLWVYLVKKRLISTTHDKTVSRDRVM 391

Query: 64  AAYCIMRRITLDVGRIIAAQIRGV 88
           A YCI+R I +DVG++IA Q+R +
Sbjct: 392 ATYCIVRSIPIDVGQLIARQLRAL 415

The following BLAST results are available for this feature:

BLAST of Cla97C11G216252.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904385.1	2.4e-20	59.14	uncharacterized protein LOC120090747 [Benincasa hispida]	[more]
XP_038876674.1	3.5e-19	61.90	chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]	[more]

BLAST of Cla97C11G216252.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C11G216252.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C11G216252.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 223..239 score: 41.18 coord: 149..165 score: 35.29 coord: 199..220 score: 35.45 coord: 183..195 score: 46.15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 364..386
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..290

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C11G216252	Cla97C11G216252	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C11G216252.1-exon	Cla97C11G216252.1-exon-Cla97Chr11:16241015..16242175	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C11G216252.1-cds	Cla97C11G216252.1-cds-Cla97Chr11:16241015..16242175	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C11G216252.1	Cla97C11G216252.1-protein	polypeptide